Wall clock time and date at job start Tue Mar 31 2020 00:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38621 * 120.10946 * 2 1 4 4 N 1.39980 * 119.99768 * 359.72864 * 3 2 1 5 5 C 1.34776 * 119.99730 * 147.12616 * 4 3 2 6 6 O 1.21581 * 120.00552 * 3.27181 * 5 4 3 7 7 N 1.34780 * 119.99731 * 183.26704 * 5 4 3 8 8 C 1.46499 * 120.00166 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47172 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00231 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99787 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00124 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47296 * 90.00261 * 13 11 9 15 15 H 1.48496 * 109.47282 * 210.00476 * 13 11 9 16 16 H 1.48505 * 109.47104 * 330.00269 * 13 11 9 17 17 C 1.38950 * 120.00304 * 179.69843 * 3 2 1 18 18 C 1.38264 * 120.23609 * 0.02964 * 17 3 2 19 19 C 1.37962 * 120.22633 * 359.97438 * 18 17 3 20 20 C 1.39508 * 120.11373 * 179.72585 * 2 1 3 21 21 C 1.47740 * 120.11347 * 0.27205 * 20 2 1 22 22 O 1.21466 * 120.00478 * 6.41116 * 21 20 2 23 23 O 1.34710 * 119.99618 * 186.40229 * 21 20 2 24 24 H 1.09001 * 109.47138 * 97.54434 * 1 2 3 25 25 H 1.08992 * 109.47384 * 217.54707 * 1 2 3 26 26 H 1.09003 * 109.47524 * 337.54676 * 1 2 3 27 27 H 0.97002 * 119.99791 * 327.11829 * 4 3 2 28 28 H 0.97005 * 120.00129 * 0.02562 * 7 5 4 29 29 H 1.08994 * 109.47227 * 300.00559 * 8 7 5 30 30 H 1.08997 * 109.46838 * 59.99927 * 8 7 5 31 31 H 0.96995 * 119.99310 * 179.97438 * 12 11 9 32 32 H 1.08000 * 119.88024 * 180.02562 * 17 3 2 33 33 H 1.08004 * 119.88471 * 180.02562 * 18 17 3 34 34 H 1.07999 * 120.00535 * 179.97438 * 19 18 17 35 35 H 0.96700 * 116.99983 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2024 1.1992 0.0000 4 7 1.5048 2.4127 -0.0057 5 6 2.0163 3.4870 0.6274 6 8 3.1107 3.4192 1.1526 7 7 1.3145 4.6366 0.6781 8 6 1.8702 5.8042 1.3668 9 6 0.8951 6.9499 1.2796 10 1 -0.0447 6.8211 0.7634 11 6 1.2023 8.1623 1.8600 12 7 2.3466 8.3189 2.4892 13 14 -0.0066 9.5822 1.7526 14 1 -0.9259 9.5389 2.9180 15 1 0.7375 10.8673 1.7567 16 1 -0.7926 9.4694 0.4977 17 6 3.5919 1.1966 0.0063 18 6 4.2859 0.0008 0.0120 19 6 3.6035 -1.1983 0.0120 20 6 2.2069 -1.2068 0.0058 21 6 1.4733 -2.4892 0.0058 22 8 0.2649 -2.4977 -0.1166 23 8 2.1447 -3.6491 0.1415 24 1 -0.3633 -0.1349 -1.0188 25 1 -0.3634 -0.8147 0.6262 26 1 -0.3634 0.9498 0.3925 27 1 0.6533 2.4805 -0.4655 28 1 0.4412 4.6907 0.2593 29 1 2.0483 5.5579 2.4135 30 1 2.8105 6.0902 0.8958 31 1 2.5628 9.1720 2.8971 32 1 4.1317 2.1320 0.0067 33 1 5.3659 0.0054 0.0174 34 1 4.1492 -2.1303 0.0160 35 1 1.6217 -4.4624 0.1353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600043277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:01 Heat of formation + Delta-G solvation = -117.583047 kcal Electronic energy + Delta-G solvation = -20676.536773 eV Core-core repulsion = 17252.560642 eV Total energy + Delta-G solvation = -3423.976131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99044 -41.14350 -39.49792 -37.13194 -36.33970 -35.86550 -34.38089 -33.53128 -31.30214 -29.17012 -28.01396 -25.55008 -24.87276 -23.09800 -22.20307 -21.63980 -19.86816 -19.44139 -18.53508 -18.07400 -17.15603 -16.94500 -16.71757 -16.61129 -16.50197 -15.95883 -15.62115 -14.99557 -14.61189 -14.56320 -14.15841 -14.06057 -14.03784 -13.48026 -13.12598 -13.07284 -12.89303 -12.72125 -12.49554 -12.33823 -12.21852 -11.54906 -11.48225 -11.32846 -11.05028 -10.80911 -9.98684 -9.89730 -9.08897 -8.28929 -6.45024 -0.33086 0.23947 1.43648 1.46464 1.50320 1.55977 1.61579 2.09341 2.13126 2.39172 2.75441 3.06600 3.34895 3.74851 3.86235 4.03079 4.14521 4.34373 4.49999 4.71402 4.74927 4.79036 5.02978 5.11245 5.21791 5.25906 5.31848 5.35908 5.42418 5.49474 5.62414 5.65385 5.82379 5.90504 6.11626 6.65619 7.01307 7.11565 7.24842 7.54783 8.83192 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038974 B = 0.003242 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.259959 B = 8635.458396 C = 9217.205815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.055 4.055 3 C 0.141 3.859 4 N -0.671 5.671 5 C 0.693 3.307 6 O -0.622 6.622 7 N -0.715 5.715 8 C 0.285 3.715 9 C -0.556 4.556 10 H 0.084 0.916 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.984 3.016 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.256 1.256 17 C -0.103 4.103 18 C -0.118 4.118 19 C -0.066 4.066 20 C -0.131 4.131 21 C 0.536 3.464 22 O -0.532 6.532 23 O -0.502 6.502 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.421 0.579 28 H 0.407 0.593 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.269 0.731 32 H 0.125 0.875 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -21.665 -7.904 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C 0.046 3.954 4 N -0.321 5.321 5 C 0.393 3.607 6 O -0.503 6.503 7 N -0.368 5.368 8 C 0.162 3.838 9 C -0.594 4.594 10 H 0.102 0.898 11 C -0.194 4.194 12 N -0.568 5.568 13 Si 0.807 3.193 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.180 1.180 17 C -0.123 4.123 18 C -0.136 4.136 19 C -0.085 4.085 20 C -0.133 4.133 21 C 0.382 3.618 22 O -0.424 6.424 23 O -0.316 6.316 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.260 0.740 28 H 0.243 0.757 29 H 0.007 0.993 30 H 0.010 0.990 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -1.426 -21.138 -7.341 22.422 hybrid contribution -1.214 0.645 -0.083 1.377 sum -2.641 -20.493 -7.424 21.956 Atomic orbital electron populations 1.20994 0.88912 1.03284 1.04013 1.19796 0.97402 0.89916 0.98748 1.17328 0.91333 0.84138 1.02649 1.42414 1.25744 1.07728 1.56184 1.16212 0.84157 0.80933 0.79394 1.90839 1.22130 1.83934 1.53365 1.45343 1.22074 1.10518 1.58827 1.18481 0.93682 0.81472 0.90154 1.21592 1.04483 0.96283 1.37011 0.89792 1.26025 0.97438 1.01943 0.94027 1.70133 1.24337 1.26361 1.35947 0.85163 0.77954 0.76875 0.79263 1.19722 1.20991 1.17953 1.21750 0.93096 1.00406 0.97078 1.21308 1.01694 0.90597 1.00000 1.21639 0.92034 0.99698 0.95135 1.18759 0.94203 0.89445 1.10845 1.20629 0.84782 0.84665 0.71728 1.90847 1.16197 1.88053 1.47347 1.84505 1.45395 1.17292 1.84439 0.89480 0.89576 0.91581 0.73995 0.75738 0.99273 0.99011 0.92215 0.85675 0.82445 0.81674 0.70374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.30 71.24 0.59 -1.96 16 2 C -0.06 -1.39 5.93 -19.47 -0.12 -1.50 16 3 C 0.14 4.13 6.31 38.10 0.24 4.37 16 4 N -0.67 -20.15 4.78 -317.28 -1.52 -21.67 16 5 C 0.69 28.05 8.41 179.05 1.51 29.56 16 6 O -0.62 -30.37 13.67 -3.97 -0.05 -30.42 16 7 N -0.71 -29.75 5.55 -482.31 -2.68 -32.42 16 8 C 0.29 15.35 5.43 85.63 0.46 15.82 16 9 C -0.56 -29.66 9.28 25.60 0.24 -29.42 16 10 H 0.08 4.04 7.60 -2.91 -0.02 4.01 16 11 C 0.01 0.30 5.46 84.65 0.46 0.76 16 12 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 13 Si 0.98 41.76 29.54 68.60 2.03 43.79 16 14 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 17 C -0.10 -3.07 8.70 22.45 0.20 -2.88 16 18 C -0.12 -2.61 10.02 22.21 0.22 -2.39 16 19 C -0.07 -1.27 9.61 22.55 0.22 -1.06 16 20 C -0.13 -2.91 5.87 -20.12 -0.12 -3.03 16 21 C 0.54 10.58 8.20 70.33 0.58 11.15 16 22 O -0.53 -12.72 14.16 19.95 0.28 -12.44 16 23 O -0.50 -6.18 12.70 -56.20 -0.71 -6.89 16 24 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 25 H 0.09 2.05 5.93 -2.39 -0.01 2.04 16 26 H 0.07 1.36 6.77 -2.39 -0.02 1.35 16 27 H 0.42 9.57 7.62 -92.71 -0.71 8.87 16 28 H 0.41 13.80 8.34 -92.70 -0.77 13.03 16 29 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.13 4.49 6.08 -2.91 -0.02 4.47 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.17 2.17 7.62 -2.91 -0.02 2.15 16 35 H 0.43 1.28 9.11 -74.06 -0.67 0.61 16 Total: -1.00 -74.09 306.38 1.13 -72.96 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.98 Total: 22.68 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 4.48 Total: 19.43 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -3.91 Total: -109.11 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.49 Total: -49.75 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -74.09 1.13 -72.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600043277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.620 kcal (2) G-P(sol) polarization free energy of solvation -74.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds