Wall clock time and date at job start Tue Mar 31 2020 00:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37662 * 119.96182 * 2 1 4 4 C 1.39793 * 119.91797 * 179.97438 * 3 2 1 5 5 C 1.47453 * 120.07525 * 179.97438 * 4 3 2 6 6 O 1.21507 * 119.99794 * 359.97438 * 5 4 3 7 7 O 1.34745 * 120.00092 * 180.02562 * 5 4 3 8 8 C 1.39827 * 119.84744 * 359.97438 * 4 3 2 9 9 C 1.37622 * 119.92143 * 359.70185 * 8 4 3 10 10 C 1.39131 * 119.96115 * 179.97438 * 2 1 3 11 11 N 1.39405 * 119.92365 * 0.02562 * 10 2 1 12 12 C 1.34773 * 120.00617 * 155.37779 * 11 10 2 13 13 O 1.21582 * 119.99518 * 354.37809 * 12 11 10 14 14 N 1.34769 * 120.00252 * 174.10817 * 12 11 10 15 15 C 1.46505 * 120.00169 * 180.27625 * 14 12 11 16 16 C 1.50698 * 109.47334 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99962 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00227 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99801 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47383 * 0.02562 * 20 18 16 22 22 H 1.48511 * 109.46876 * 120.00404 * 20 18 16 23 23 H 1.48495 * 109.47342 * 240.00098 * 20 18 16 24 24 H 1.09006 * 109.47279 * 270.02320 * 1 2 3 25 25 H 1.09002 * 109.47023 * 30.02672 * 1 2 3 26 26 H 1.09011 * 109.46918 * 150.02330 * 1 2 3 27 27 H 1.07996 * 120.03438 * 359.97438 * 3 2 1 28 28 H 0.96700 * 117.00299 * 180.02562 * 7 5 4 29 29 H 1.08004 * 120.04361 * 180.02562 * 8 4 3 30 30 H 1.08000 * 119.96280 * 180.29257 * 9 8 4 31 31 H 0.97001 * 119.99207 * 335.37191 * 11 10 2 32 32 H 0.96999 * 120.00310 * 0.27227 * 14 12 11 33 33 H 1.09002 * 109.46556 * 299.99849 * 15 14 12 34 34 H 1.08994 * 109.47044 * 59.99415 * 15 14 12 35 35 H 0.97001 * 119.99840 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1945 1.1926 0.0000 4 6 3.5924 1.1916 0.0005 5 6 4.3323 2.4670 0.0000 6 8 3.7269 3.5205 -0.0014 7 8 5.6798 2.4642 0.0000 8 6 4.2874 -0.0218 0.0016 9 6 3.5936 -1.2103 0.0084 10 6 2.2018 -1.2054 0.0005 11 7 1.5023 -2.4113 0.0005 12 6 2.0821 -3.5267 -0.4852 13 8 3.1740 -3.4623 -1.0162 14 7 1.4541 -4.7143 -0.3776 15 6 2.0871 -5.9277 -0.9002 16 6 1.1855 -7.1101 -0.6551 17 1 0.2361 -6.9717 -0.1592 18 6 1.5726 -8.3686 -1.0640 19 7 2.7289 -8.5374 -1.6674 20 14 0.4552 -9.8344 -0.7595 21 1 -0.7785 -9.3812 -0.0682 22 1 0.0939 -10.4593 -2.0573 23 1 1.1618 -10.8278 0.0885 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6544 2.1279 -0.0004 28 1 6.1206 3.3249 0.0000 29 1 5.3674 -0.0263 0.0025 30 1 4.1297 -2.1478 0.0140 31 1 0.5983 -2.4474 0.3503 32 1 0.5830 -4.7656 0.0461 33 1 2.2576 -5.8161 -1.9710 34 1 3.0398 -6.0869 -0.3953 35 1 3.0010 -9.4228 -1.9553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600120603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:05 Heat of formation + Delta-G solvation = -99.624383 kcal Electronic energy + Delta-G solvation = -20449.228283 eV Core-core repulsion = 17026.030898 eV Total energy + Delta-G solvation = -3423.197385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80222 -40.05542 -38.38655 -36.19037 -34.85702 -34.37534 -32.72853 -32.47342 -30.09889 -27.41141 -27.00770 -24.61695 -22.76387 -22.20204 -21.01370 -20.30504 -18.51826 -17.97303 -17.64286 -17.08460 -16.12677 -15.72683 -15.45235 -14.98354 -14.77279 -14.33025 -14.21129 -13.87073 -13.73249 -13.32173 -13.14542 -12.69848 -12.39061 -12.09788 -12.05179 -11.99012 -11.67621 -11.32617 -11.01132 -11.00024 -10.74505 -10.42866 -10.36668 -9.57160 -9.46932 -8.85240 -8.85106 -8.24455 -7.85703 -6.24595 -4.32077 0.65396 1.33152 2.44205 2.90478 2.97529 3.18753 3.26554 3.29139 3.47502 3.87505 4.24702 4.62637 4.74085 4.78819 4.99487 5.08148 5.12102 5.20117 5.40393 5.43873 5.59593 5.80424 6.00422 6.14825 6.25100 6.29019 6.35250 6.50025 6.87790 6.98606 7.24699 7.38204 7.41331 7.68586 7.78439 7.88523 8.53552 8.71070 9.00338 9.34847 10.85497 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040143 B = 0.003098 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.345873 B = 9036.085436 C = 9655.577844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.148 4.148 3 C -0.028 4.028 4 C -0.169 4.169 5 C 0.533 3.467 6 O -0.526 6.526 7 O -0.513 6.513 8 C -0.038 4.038 9 C -0.149 4.149 10 C 0.229 3.771 11 N -0.687 5.687 12 C 0.688 3.312 13 O -0.574 6.574 14 N -0.717 5.717 15 C 0.264 3.736 16 C -0.545 4.545 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.281 1.281 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.411 0.589 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.406 0.594 32 H 0.390 0.610 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.701 18.016 5.289 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.151 4.151 3 C -0.046 4.046 4 C -0.171 4.171 5 C 0.379 3.621 6 O -0.417 6.417 7 O -0.324 6.324 8 C -0.057 4.057 9 C -0.170 4.170 10 C 0.129 3.871 11 N -0.332 5.332 12 C 0.388 3.612 13 O -0.452 6.452 14 N -0.368 5.368 15 C 0.144 3.856 16 C -0.583 4.583 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.155 0.845 28 H 0.269 0.731 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.242 0.758 32 H 0.222 0.778 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.962 17.609 4.696 18.250 hybrid contribution -1.064 -0.341 0.413 1.191 sum -2.025 17.268 5.109 18.121 Atomic orbital electron populations 1.20698 0.90370 1.03305 1.02435 1.19442 0.96410 0.91075 1.08184 1.20785 0.91859 0.97670 0.94323 1.18866 0.93149 0.90470 1.14662 1.20878 0.80180 0.89480 0.71551 1.90865 1.69615 1.33778 1.47462 1.84595 1.21270 1.40626 1.85934 1.21330 1.00500 0.90488 0.93426 1.21586 0.92528 1.00233 1.02612 1.17747 0.91555 0.84333 0.93450 1.42932 1.18729 1.06967 1.64575 1.16190 0.84722 0.80480 0.79790 1.90864 1.20400 1.85016 1.48931 1.45846 1.22601 1.06568 1.61826 1.19113 0.93634 0.78056 0.94829 1.21217 1.04682 0.91932 1.40518 0.91792 1.24942 0.95360 0.99028 0.94621 1.69980 1.20201 1.23478 1.38414 0.86338 0.80350 0.81999 0.78073 1.19640 1.20749 1.20738 0.91046 0.90911 0.91494 0.84517 0.73096 0.84381 0.82196 0.75757 0.77754 0.95331 0.95289 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.43 36.00 0.34 -0.61 16 2 C -0.15 -1.72 5.89 -104.50 -0.62 -2.33 16 3 C -0.03 -0.33 9.23 -39.21 -0.36 -0.69 16 4 C -0.17 -2.13 5.87 -104.97 -0.62 -2.74 16 5 C 0.53 6.44 8.26 34.48 0.28 6.73 16 6 O -0.53 -7.49 17.12 -19.27 -0.33 -7.82 16 7 O -0.51 -4.69 12.67 -40.61 -0.51 -5.21 16 8 C -0.04 -0.50 9.60 -39.21 -0.38 -0.87 16 9 C -0.15 -2.23 8.69 -39.46 -0.34 -2.58 16 10 C 0.23 3.20 6.41 -83.73 -0.54 2.67 16 11 N -0.69 -9.62 4.97 -14.22 -0.07 -9.69 16 12 C 0.69 12.97 8.36 -86.93 -0.73 12.24 16 13 O -0.57 -12.96 13.49 5.29 0.07 -12.89 16 14 N -0.72 -14.03 5.55 -66.42 -0.37 -14.40 16 15 C 0.26 6.65 5.43 -5.19 -0.03 6.62 16 16 C -0.55 -14.15 9.28 -34.44 -0.32 -14.47 16 17 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.88 -25.24 13.29 55.43 0.74 -24.51 16 20 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.07 0.56 6.97 -51.92 -0.36 0.20 16 27 H 0.14 1.46 7.64 -52.49 -0.40 1.05 16 28 H 0.41 1.80 9.11 45.56 0.42 2.22 16 29 H 0.14 1.57 7.60 -52.48 -0.40 1.17 16 30 H 0.16 2.77 5.77 -52.49 -0.30 2.46 16 31 H 0.41 4.27 7.38 -40.82 -0.30 3.97 16 32 H 0.39 6.36 8.34 -40.82 -0.34 6.02 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -33.13 311.09 -7.12 -40.25 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -2.91 Total: 8.81 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -3.40 Total: 5.60 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.30 Total: -48.60 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.77 Total: -25.92 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.13 -7.12 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600120603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.377 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds