Wall clock time and date at job start Tue Mar 31 2020 00:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37662 * 119.96182 * 2 1 4 4 C 1.39793 * 119.91797 * 179.97438 * 3 2 1 5 5 C 1.47453 * 120.07525 * 179.97438 * 4 3 2 6 6 O 1.21507 * 119.99794 * 359.97438 * 5 4 3 7 7 O 1.34745 * 120.00092 * 180.02562 * 5 4 3 8 8 C 1.39827 * 119.84744 * 359.97438 * 4 3 2 9 9 C 1.37622 * 119.92143 * 359.70185 * 8 4 3 10 10 C 1.39131 * 119.96115 * 179.97438 * 2 1 3 11 11 N 1.39405 * 119.92365 * 0.02562 * 10 2 1 12 12 C 1.34773 * 120.00617 * 155.37779 * 11 10 2 13 13 O 1.21582 * 119.99518 * 354.37809 * 12 11 10 14 14 N 1.34769 * 120.00252 * 174.10817 * 12 11 10 15 15 C 1.46505 * 120.00169 * 180.27625 * 14 12 11 16 16 C 1.50698 * 109.47334 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99962 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00227 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99801 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47383 * 0.02562 * 20 18 16 22 22 H 1.48511 * 109.46876 * 120.00404 * 20 18 16 23 23 H 1.48495 * 109.47342 * 240.00098 * 20 18 16 24 24 H 1.09006 * 109.47279 * 270.02320 * 1 2 3 25 25 H 1.09002 * 109.47023 * 30.02672 * 1 2 3 26 26 H 1.09011 * 109.46918 * 150.02330 * 1 2 3 27 27 H 1.07996 * 120.03438 * 359.97438 * 3 2 1 28 28 H 0.96700 * 117.00299 * 180.02562 * 7 5 4 29 29 H 1.08004 * 120.04361 * 180.02562 * 8 4 3 30 30 H 1.08000 * 119.96280 * 180.29257 * 9 8 4 31 31 H 0.97001 * 119.99207 * 335.37191 * 11 10 2 32 32 H 0.96999 * 120.00310 * 0.27227 * 14 12 11 33 33 H 1.09002 * 109.46556 * 299.99849 * 15 14 12 34 34 H 1.08994 * 109.47044 * 59.99415 * 15 14 12 35 35 H 0.97001 * 119.99840 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1945 1.1926 0.0000 4 6 3.5924 1.1916 0.0005 5 6 4.3323 2.4670 0.0000 6 8 3.7269 3.5205 -0.0014 7 8 5.6798 2.4642 0.0000 8 6 4.2874 -0.0218 0.0016 9 6 3.5936 -1.2103 0.0084 10 6 2.2018 -1.2054 0.0005 11 7 1.5023 -2.4113 0.0005 12 6 2.0821 -3.5267 -0.4852 13 8 3.1740 -3.4623 -1.0162 14 7 1.4541 -4.7143 -0.3776 15 6 2.0871 -5.9277 -0.9002 16 6 1.1855 -7.1101 -0.6551 17 1 0.2361 -6.9717 -0.1592 18 6 1.5726 -8.3686 -1.0640 19 7 2.7289 -8.5374 -1.6674 20 14 0.4552 -9.8344 -0.7595 21 1 -0.7785 -9.3812 -0.0682 22 1 0.0939 -10.4593 -2.0573 23 1 1.1618 -10.8278 0.0885 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6544 2.1279 -0.0004 28 1 6.1206 3.3249 0.0000 29 1 5.3674 -0.0263 0.0025 30 1 4.1297 -2.1478 0.0140 31 1 0.5983 -2.4474 0.3503 32 1 0.5830 -4.7656 0.0461 33 1 2.2576 -5.8161 -1.9710 34 1 3.0398 -6.0869 -0.3953 35 1 3.0010 -9.4228 -1.9553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600120603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:05 Heat of formation + Delta-G solvation = -123.917346 kcal Electronic energy + Delta-G solvation = -20450.281705 eV Core-core repulsion = 17026.030898 eV Total energy + Delta-G solvation = -3424.250806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.98625 -41.14964 -39.59694 -37.07952 -36.35791 -35.94360 -34.39405 -33.68549 -31.29736 -29.16387 -27.94126 -25.88013 -24.45119 -23.34149 -22.20227 -21.60167 -19.95692 -19.10236 -18.71558 -18.08691 -17.98465 -16.86943 -16.75404 -16.61092 -16.12280 -15.71732 -15.39363 -14.99507 -14.76635 -14.57844 -14.32233 -14.06335 -14.00454 -13.55658 -13.09892 -12.88975 -12.80981 -12.76055 -12.58835 -12.36496 -12.19960 -11.78163 -11.64238 -11.44858 -11.10551 -10.81769 -9.97201 -9.84643 -9.09745 -8.28703 -6.44691 -0.38375 0.33048 1.39723 1.45064 1.45869 1.57314 1.63318 2.07286 2.12301 2.38999 2.76959 3.07224 3.30451 3.74831 3.81294 4.08869 4.17305 4.26855 4.39516 4.73745 4.84145 4.91959 5.03774 5.11904 5.19056 5.25741 5.26725 5.31400 5.39171 5.45562 5.57739 5.63387 5.82302 5.87470 6.10310 6.66128 6.99534 7.08280 7.25006 7.50990 8.83523 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040143 B = 0.003098 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.345873 B = 9036.085436 C = 9655.577844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.131 4.131 3 C -0.029 4.029 4 C -0.172 4.172 5 C 0.540 3.460 6 O -0.549 6.549 7 O -0.507 6.507 8 C -0.038 4.038 9 C -0.169 4.169 10 C 0.205 3.795 11 N -0.665 5.665 12 C 0.690 3.310 13 O -0.616 6.616 14 N -0.711 5.711 15 C 0.283 3.717 16 C -0.554 4.554 17 H 0.085 0.915 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.984 3.016 21 H -0.252 1.252 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.154 0.846 28 H 0.433 0.567 29 H 0.149 0.851 30 H 0.130 0.870 31 H 0.426 0.574 32 H 0.408 0.592 33 H -0.009 1.009 34 H -0.008 1.008 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.944 19.182 6.277 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.134 4.134 3 C -0.048 4.048 4 C -0.174 4.174 5 C 0.387 3.613 6 O -0.441 6.441 7 O -0.321 6.321 8 C -0.057 4.057 9 C -0.190 4.190 10 C 0.107 3.893 11 N -0.312 5.312 12 C 0.391 3.609 13 O -0.497 6.497 14 N -0.364 5.364 15 C 0.160 3.840 16 C -0.592 4.592 17 H 0.103 0.897 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.807 3.193 21 H -0.176 1.176 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.172 0.828 28 H 0.295 0.705 29 H 0.167 0.833 30 H 0.148 0.852 31 H 0.265 0.735 32 H 0.244 0.756 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.239 18.851 5.726 19.966 hybrid contribution -0.258 -0.532 0.112 0.602 sum -3.497 18.319 5.838 19.542 Atomic orbital electron populations 1.20832 0.87688 1.04276 1.04154 1.19723 0.98181 0.89714 1.05798 1.21060 0.91700 0.98385 0.93608 1.19077 0.93861 0.90564 1.13887 1.20709 0.80902 0.88744 0.70980 1.90861 1.70296 1.34323 1.48662 1.84551 1.19875 1.42508 1.85120 1.21357 1.01061 0.90034 0.93244 1.21427 0.93404 0.99763 1.04391 1.17915 0.91376 0.84853 0.95181 1.42486 1.19318 1.05582 1.63809 1.16258 0.84102 0.81197 0.79381 1.90852 1.22372 1.85794 1.50635 1.45363 1.23289 1.05528 1.62224 1.18513 0.92755 0.80431 0.92271 1.21615 1.05311 0.92060 1.40181 0.89652 1.26017 0.96813 1.02507 0.94128 1.70137 1.22480 1.24373 1.39816 0.85127 0.78637 0.77604 0.77931 1.17583 1.20624 1.20617 0.88825 0.89316 0.91190 0.82793 0.70534 0.83348 0.85214 0.73456 0.75559 0.99112 0.98990 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.43 71.23 0.67 -0.86 16 2 C -0.13 -2.76 5.89 -19.79 -0.12 -2.88 16 3 C -0.03 -0.62 9.23 22.51 0.21 -0.41 16 4 C -0.17 -4.09 5.87 -20.09 -0.12 -4.20 16 5 C 0.54 12.11 8.26 70.25 0.58 12.69 16 6 O -0.55 -14.58 17.12 19.81 0.34 -14.24 16 7 O -0.51 -8.30 12.67 -56.56 -0.72 -9.01 16 8 C -0.04 -0.98 9.60 22.51 0.22 -0.76 16 9 C -0.17 -5.21 8.69 22.35 0.19 -5.01 16 10 C 0.21 5.62 6.41 38.38 0.25 5.86 16 11 N -0.66 -18.18 4.97 -317.17 -1.57 -19.75 16 12 C 0.69 26.62 8.36 179.06 1.50 28.12 16 13 O -0.62 -29.31 13.49 -3.97 -0.05 -29.36 16 14 N -0.71 -28.18 5.55 -482.31 -2.68 -30.86 16 15 C 0.28 14.84 5.43 85.63 0.46 15.31 16 16 C -0.55 -28.81 9.28 25.60 0.24 -28.58 16 17 H 0.09 3.98 7.60 -2.91 -0.02 3.96 16 18 C 0.01 0.28 5.46 84.65 0.46 0.74 16 19 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 20 Si 0.98 41.02 29.54 68.60 2.03 43.04 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 24 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 26 H 0.07 0.94 6.97 -2.38 -0.02 0.92 16 27 H 0.15 2.81 7.64 -2.91 -0.02 2.79 16 28 H 0.43 2.80 9.11 -74.06 -0.67 2.13 16 29 H 0.15 3.37 7.60 -2.91 -0.02 3.34 16 30 H 0.13 4.83 5.77 -2.91 -0.02 4.81 16 31 H 0.43 8.09 7.38 -92.71 -0.68 7.41 16 32 H 0.41 12.90 8.34 -92.71 -0.77 12.13 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -74.11 311.09 1.21 -72.90 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.96 Total: 21.59 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.54 Total: 20.01 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -3.97 Total: -104.92 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.43 Total: -52.62 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -74.11 1.21 -72.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600120603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.019 kcal (2) G-P(sol) polarization free energy of solvation -74.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds