Wall clock time and date at job start Tue Mar 31 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38664 * 120.74655 * 2 1 4 4 C 1.38553 * 119.36767 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.54574 * 180.02562 * 4 3 2 6 6 N 1.31528 * 120.91125 * 359.74428 * 4 3 2 7 7 C 1.32790 * 121.62832 * 0.52398 * 6 4 3 8 8 C 1.48002 * 119.72830 * 179.75013 * 7 6 4 9 9 O 1.21572 * 120.00068 * 172.54088 * 8 7 6 10 10 N 1.34772 * 120.00651 * 352.54196 * 8 7 6 11 11 C 1.36782 * 120.00375 * 183.22604 * 10 8 7 12 12 H 1.08003 * 120.00159 * 209.51757 * 11 10 8 13 13 C 1.39101 * 119.99984 * 29.51499 * 11 10 8 14 14 N 1.31325 * 120.00249 * 17.91341 * 13 11 10 15 15 Si 1.86804 * 120.00066 * 197.90864 * 13 11 10 16 16 H 1.48501 * 109.47207 * 94.99625 * 15 13 11 17 17 H 1.48498 * 109.47454 * 214.99954 * 15 13 11 18 18 H 1.48498 * 109.47288 * 334.99948 * 15 13 11 19 19 C 1.46501 * 119.99530 * 3.22315 * 10 8 7 20 20 C 1.50705 * 109.47142 * 83.05734 * 19 10 8 21 21 O 1.20826 * 119.99610 * 359.97438 * 20 19 10 22 22 O 1.34226 * 119.99902 * 180.02562 * 20 19 10 23 23 C 1.38540 * 120.75372 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47169 * 269.97012 * 1 2 3 25 25 H 1.08994 * 109.47389 * 29.97806 * 1 2 3 26 26 H 1.09006 * 109.47230 * 149.97836 * 1 2 3 27 27 H 1.08003 * 120.32096 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47405 * 94.96759 * 5 4 3 29 29 H 1.09001 * 109.47160 * 214.97102 * 5 4 3 30 30 H 1.09009 * 109.47089 * 334.96424 * 5 4 3 31 31 H 0.96999 * 120.00155 * 184.96269 * 14 13 11 32 32 H 1.09000 * 109.47110 * 203.05079 * 19 10 8 33 33 H 1.08998 * 109.47246 * 323.05630 * 19 10 8 34 34 H 0.96702 * 116.99681 * 179.97438 * 22 20 19 35 35 H 1.08002 * 120.47303 * 359.95196 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1917 0.0000 4 6 3.6011 1.1584 -0.0005 5 6 4.3755 2.4511 0.0000 6 7 4.2494 0.0140 0.0040 7 6 3.6089 -1.1492 -0.0011 8 6 4.3807 -2.4120 -0.0013 9 8 3.8065 -3.4754 0.1308 10 7 5.7202 -2.3833 -0.1478 11 6 6.4262 -3.5529 -0.2143 12 1 7.4465 -3.5885 0.1382 13 6 5.8302 -4.6964 -0.7357 14 7 4.7495 -4.5949 -1.4749 15 14 6.5672 -6.3767 -0.3848 16 1 5.8826 -6.9829 0.7852 17 1 6.3898 -7.2526 -1.5707 18 1 8.0152 -6.2303 -0.0898 19 6 6.4199 -1.0992 -0.2361 20 6 6.6632 -0.5633 1.1513 21 8 6.2899 -1.1896 2.1148 22 8 7.2936 0.6101 1.3165 23 6 2.2154 -1.1906 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6934 2.1370 0.0004 28 1 4.6390 2.7164 1.0239 29 1 5.2844 2.3305 -0.5894 30 1 3.7633 3.2417 -0.4341 31 1 4.2927 -5.3949 -1.7786 32 1 7.3741 -1.2395 -0.7438 33 1 5.8103 -0.3910 -0.7973 34 1 7.4264 0.9130 2.2253 35 1 1.6956 -2.1372 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600181063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:19 Heat of formation + Delta-G solvation = -53.735823 kcal Electronic energy + Delta-G solvation = -22399.926603 eV Core-core repulsion = 18978.719096 eV Total energy + Delta-G solvation = -3421.207507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20256 -39.27585 -37.69994 -35.37075 -34.25972 -33.61400 -32.52661 -31.46363 -27.74126 -27.38067 -27.13852 -25.31868 -23.00230 -21.21255 -20.75867 -19.49161 -17.39840 -17.09870 -16.14686 -15.94615 -15.56079 -15.53762 -14.93194 -14.44670 -14.37060 -13.77410 -13.58233 -13.20001 -13.06298 -12.61834 -12.57255 -12.38759 -12.14104 -11.95173 -11.71699 -11.48370 -11.31633 -11.09309 -10.94058 -10.75932 -10.58076 -10.19130 -9.88862 -9.25357 -9.11377 -8.72741 -8.36868 -8.15817 -7.10074 -6.07448 -3.86387 1.37501 1.65052 3.10792 3.32338 3.38590 3.41061 3.62816 3.95541 4.28880 4.60632 4.79649 4.88602 5.04211 5.25046 5.33007 5.37393 5.49835 5.60646 5.65409 5.77400 5.81473 5.91990 5.97850 6.06476 6.15629 6.20498 6.30401 6.52708 6.57282 6.70510 7.15131 7.19363 7.46010 8.06685 8.38233 8.67990 8.88822 9.08484 9.52459 10.26480 10.86510 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.007664 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.994971 B = 3652.460817 C = 4891.836700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.047 4.047 3 C -0.190 4.190 4 C 0.122 3.878 5 C -0.098 4.098 6 N -0.486 5.486 7 C 0.135 3.865 8 C 0.477 3.523 9 O -0.501 6.501 10 N -0.410 5.410 11 C -0.313 4.313 12 H 0.089 0.911 13 C 0.038 3.962 14 N -0.781 5.781 15 Si 0.919 3.081 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.111 3.889 20 C 0.474 3.526 21 O -0.513 6.513 22 O -0.527 6.527 23 C -0.140 4.140 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.266 0.734 32 H 0.097 0.903 33 H 0.140 0.860 34 H 0.393 0.607 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 13.395 0.644 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.054 4.054 3 C -0.211 4.211 4 C -0.016 4.016 5 C -0.155 4.155 6 N -0.202 5.202 7 C -0.003 4.003 8 C 0.266 3.734 9 O -0.376 6.376 10 N -0.129 5.129 11 C -0.440 4.440 12 H 0.107 0.893 13 C -0.174 4.174 14 N -0.418 5.418 15 Si 0.746 3.254 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.016 4.016 20 C 0.315 3.685 21 O -0.399 6.399 22 O -0.337 6.337 23 C -0.161 4.161 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.143 0.857 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.157 0.843 34 H 0.249 0.751 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.181 12.379 0.425 12.577 hybrid contribution -0.598 -0.507 0.904 1.196 sum -2.780 11.872 1.328 12.265 Atomic orbital electron populations 1.20767 0.90627 1.02919 1.02467 1.20221 0.96387 0.92888 0.95943 1.21708 0.94709 0.98046 1.06594 1.21343 0.91229 0.94242 0.94831 1.20650 1.00109 0.91926 1.02849 1.67917 1.39500 0.97870 1.14881 1.22024 0.92128 0.92592 0.93558 1.17056 0.82207 0.85968 0.88215 1.90621 1.68610 1.29114 1.49240 1.42923 1.04958 1.03268 1.61774 1.19405 0.98648 0.86775 1.39186 0.89323 1.25062 0.96847 0.99664 0.95822 1.70052 1.15980 1.30107 1.25625 0.86039 0.78983 0.82466 0.77908 1.20509 1.21185 1.19685 1.21546 1.00489 0.89641 0.89925 1.24589 0.72498 0.77244 0.94137 1.90675 1.47999 1.58481 1.42759 1.84569 1.73146 1.39495 1.36504 1.21877 0.94351 0.98769 1.01105 0.90921 0.91448 0.91059 0.85672 0.90908 0.90325 0.91319 0.92324 0.88479 0.84286 0.75077 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.06 36.01 0.36 -0.95 16 2 C -0.05 -0.75 5.91 -104.35 -0.62 -1.37 16 3 C -0.19 -2.80 9.43 -39.31 -0.37 -3.18 16 4 C 0.12 1.98 6.78 -82.61 -0.56 1.42 16 5 C -0.10 -1.15 10.19 36.00 0.37 -0.79 16 6 N -0.49 -9.69 4.90 -6.07 -0.03 -9.72 16 7 C 0.13 3.11 6.62 -83.02 -0.55 2.56 16 8 C 0.48 13.16 6.69 -12.26 -0.08 13.08 16 9 O -0.50 -15.45 12.78 5.30 0.07 -15.38 16 10 N -0.41 -10.88 2.16 -117.12 -0.25 -11.14 16 11 C -0.31 -8.75 9.43 -15.02 -0.14 -8.89 16 12 H 0.09 2.36 7.90 -52.48 -0.41 1.95 16 13 C 0.04 1.06 4.49 -17.45 -0.08 0.98 16 14 N -0.78 -23.05 10.33 55.50 0.57 -22.48 16 15 Si 0.92 21.91 29.59 -169.99 -5.03 16.88 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.11 2.35 5.57 -5.19 -0.03 2.33 16 20 C 0.47 9.64 7.00 36.01 0.25 9.90 16 21 O -0.51 -12.54 17.01 -18.75 -0.32 -12.86 16 22 O -0.53 -8.02 13.42 -39.25 -0.53 -8.55 16 23 C -0.14 -2.85 9.34 -39.04 -0.36 -3.22 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 27 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.63 8.04 -51.92 -0.42 0.21 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.10 1.86 7.98 -51.93 -0.41 1.44 16 33 H 0.14 2.82 5.24 -52.24 -0.27 2.55 16 34 H 0.39 4.33 9.10 45.56 0.41 4.74 16 35 H 0.14 2.93 7.66 -52.49 -0.40 2.53 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -35.89 305.96 -5.89 -41.78 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.17 Total: 4.97 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -1.81 Total: 11.87 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.29 Total: -43.33 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.78 Total: -36.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.89 -5.89 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600181063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.955 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds