Wall clock time and date at job start Tue Mar 31 2020 01:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38664 * 120.74655 * 2 1 4 4 C 1.38553 * 119.36767 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.54574 * 180.02562 * 4 3 2 6 6 N 1.31528 * 120.91125 * 359.74428 * 4 3 2 7 7 C 1.32790 * 121.62832 * 0.52398 * 6 4 3 8 8 C 1.48002 * 119.72830 * 179.75013 * 7 6 4 9 9 O 1.21572 * 120.00068 * 172.54088 * 8 7 6 10 10 N 1.34772 * 120.00651 * 352.54196 * 8 7 6 11 11 C 1.36782 * 120.00375 * 183.22604 * 10 8 7 12 12 H 1.08003 * 120.00159 * 209.51757 * 11 10 8 13 13 C 1.39101 * 119.99984 * 29.51499 * 11 10 8 14 14 N 1.31325 * 120.00249 * 17.91341 * 13 11 10 15 15 Si 1.86804 * 120.00066 * 197.90864 * 13 11 10 16 16 H 1.48501 * 109.47207 * 94.99625 * 15 13 11 17 17 H 1.48498 * 109.47454 * 214.99954 * 15 13 11 18 18 H 1.48498 * 109.47288 * 334.99948 * 15 13 11 19 19 C 1.46501 * 119.99530 * 3.22315 * 10 8 7 20 20 C 1.50705 * 109.47142 * 83.05734 * 19 10 8 21 21 O 1.20826 * 119.99610 * 359.97438 * 20 19 10 22 22 O 1.34226 * 119.99902 * 180.02562 * 20 19 10 23 23 C 1.38540 * 120.75372 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47169 * 269.97012 * 1 2 3 25 25 H 1.08994 * 109.47389 * 29.97806 * 1 2 3 26 26 H 1.09006 * 109.47230 * 149.97836 * 1 2 3 27 27 H 1.08003 * 120.32096 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47405 * 94.96759 * 5 4 3 29 29 H 1.09001 * 109.47160 * 214.97102 * 5 4 3 30 30 H 1.09009 * 109.47089 * 334.96424 * 5 4 3 31 31 H 0.96999 * 120.00155 * 184.96269 * 14 13 11 32 32 H 1.09000 * 109.47110 * 203.05079 * 19 10 8 33 33 H 1.08998 * 109.47246 * 323.05630 * 19 10 8 34 34 H 0.96702 * 116.99681 * 179.97438 * 22 20 19 35 35 H 1.08002 * 120.47303 * 359.95196 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1917 0.0000 4 6 3.6011 1.1584 -0.0005 5 6 4.3755 2.4511 0.0000 6 7 4.2494 0.0140 0.0040 7 6 3.6089 -1.1492 -0.0011 8 6 4.3807 -2.4120 -0.0013 9 8 3.8065 -3.4754 0.1308 10 7 5.7202 -2.3833 -0.1478 11 6 6.4262 -3.5529 -0.2143 12 1 7.4465 -3.5885 0.1382 13 6 5.8302 -4.6964 -0.7357 14 7 4.7495 -4.5949 -1.4749 15 14 6.5672 -6.3767 -0.3848 16 1 5.8826 -6.9829 0.7852 17 1 6.3898 -7.2526 -1.5707 18 1 8.0152 -6.2303 -0.0898 19 6 6.4199 -1.0992 -0.2361 20 6 6.6632 -0.5633 1.1513 21 8 6.2899 -1.1896 2.1148 22 8 7.2936 0.6101 1.3165 23 6 2.2154 -1.1906 -0.0005 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6934 2.1370 0.0004 28 1 4.6390 2.7164 1.0239 29 1 5.2844 2.3305 -0.5894 30 1 3.7633 3.2417 -0.4341 31 1 4.2927 -5.3949 -1.7786 32 1 7.3741 -1.2395 -0.7438 33 1 5.8103 -0.3910 -0.7973 34 1 7.4264 0.9130 2.2253 35 1 1.6956 -2.1372 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600181063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:18 Heat of formation + Delta-G solvation = -79.241005 kcal Electronic energy + Delta-G solvation = -22401.032590 eV Core-core repulsion = 18978.719096 eV Total energy + Delta-G solvation = -3422.313495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77114 -40.81506 -39.54381 -36.93178 -36.08308 -35.07066 -34.21766 -33.13316 -29.35970 -28.79383 -28.25993 -27.19806 -24.72363 -22.81769 -22.02328 -21.28611 -19.00835 -18.87201 -17.86591 -17.48713 -17.33778 -16.96620 -16.49600 -16.26967 -15.85051 -15.57563 -15.03182 -14.75564 -14.24736 -14.12495 -13.89623 -13.73319 -13.41445 -13.40100 -13.03437 -12.98181 -12.91908 -12.88778 -12.51845 -12.39865 -12.32119 -12.04159 -11.66971 -11.19716 -10.50527 -10.33465 -10.06177 -9.80501 -9.15602 -8.15677 -6.00383 -0.09251 0.29552 1.38440 1.46645 1.49696 1.52490 2.06145 2.29861 2.53085 2.94023 3.11616 3.28721 3.38881 3.76473 3.87266 4.15837 4.20155 4.41822 4.51295 4.55559 4.70213 4.75576 4.77084 4.83253 4.90107 4.95122 5.08027 5.21102 5.32062 5.34064 5.40368 5.76275 5.84166 6.03963 6.82063 6.91273 7.10934 7.22791 7.51649 8.25594 8.79602 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.007664 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.994971 B = 3652.460817 C = 4891.836700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.041 4.041 3 C -0.166 4.166 4 C 0.113 3.887 5 C -0.095 4.095 6 N -0.495 5.495 7 C 0.097 3.903 8 C 0.466 3.534 9 O -0.554 6.554 10 N -0.427 5.427 11 C -0.345 4.345 12 H 0.093 0.907 13 C -0.009 4.009 14 N -0.821 5.821 15 Si 0.981 3.019 16 H -0.294 1.294 17 H -0.275 1.275 18 H -0.251 1.251 19 C 0.106 3.894 20 C 0.490 3.510 21 O -0.560 6.560 22 O -0.502 6.502 23 C -0.162 4.162 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.179 0.821 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.261 0.739 32 H 0.114 0.886 33 H 0.152 0.848 34 H 0.418 0.582 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 17.286 0.826 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.049 4.049 3 C -0.186 4.186 4 C -0.027 4.027 5 C -0.152 4.152 6 N -0.211 5.211 7 C -0.040 4.040 8 C 0.256 3.744 9 O -0.432 6.432 10 N -0.146 5.146 11 C -0.473 4.473 12 H 0.110 0.890 13 C -0.217 4.217 14 N -0.459 5.459 15 Si 0.805 3.195 16 H -0.221 1.221 17 H -0.201 1.201 18 H -0.175 1.175 19 C -0.020 4.020 20 C 0.333 3.667 21 O -0.451 6.451 22 O -0.313 6.313 23 C -0.184 4.184 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.196 0.804 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.168 0.832 34 H 0.278 0.722 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.505 16.332 0.595 16.534 hybrid contribution -0.578 -1.352 0.899 1.723 sum -3.083 14.981 1.494 15.368 Atomic orbital electron populations 1.20878 0.87269 1.04464 1.03901 1.20699 0.98696 0.91597 0.93874 1.22328 0.94273 0.99455 1.02518 1.22264 0.92796 0.94467 0.93134 1.20805 1.00240 0.90122 1.03989 1.67765 1.40093 0.97965 1.15252 1.21461 0.92668 0.92184 0.97646 1.17883 0.82824 0.87220 0.86481 1.90552 1.69877 1.31549 1.51246 1.43074 1.05128 1.04595 1.61757 1.19675 0.99176 0.88242 1.40159 0.88964 1.25980 0.97150 1.03218 0.95378 1.70165 1.17842 1.30394 1.27454 0.85108 0.79072 0.78076 0.77228 1.22129 1.20079 1.17470 1.21695 1.01030 0.88044 0.91196 1.24131 0.71796 0.77850 0.92898 1.90670 1.50250 1.60194 1.43944 1.84473 1.71516 1.36772 1.38574 1.21879 0.93734 0.99932 1.02818 0.89342 0.87987 0.91499 0.80412 0.89629 0.90412 0.87579 0.92972 0.86779 0.83176 0.72227 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.06 71.24 0.72 -1.48 16 2 C -0.04 -1.22 5.91 -19.69 -0.12 -1.34 16 3 C -0.17 -4.11 9.43 22.45 0.21 -3.90 16 4 C 0.11 3.25 6.78 42.68 0.29 3.54 16 5 C -0.09 -1.74 10.19 71.24 0.73 -1.01 16 6 N -0.50 -19.31 4.90 -173.12 -0.85 -20.15 16 7 C 0.10 4.61 6.62 41.87 0.28 4.88 16 8 C 0.47 27.29 6.69 86.83 0.58 27.87 16 9 O -0.55 -36.75 12.78 -3.94 -0.05 -36.80 16 10 N -0.43 -23.70 2.16 -642.73 -1.39 -25.09 16 11 C -0.34 -20.20 9.43 84.13 0.79 -19.40 16 12 H 0.09 5.10 7.90 -2.91 -0.02 5.08 16 13 C -0.01 -0.56 4.49 84.98 0.38 -0.18 16 14 N -0.82 -51.55 10.33 21.69 0.22 -51.33 16 15 Si 0.98 46.96 29.59 68.60 2.03 48.99 16 16 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.25 -11.00 7.11 99.48 0.71 -10.30 16 19 C 0.11 4.55 5.57 85.63 0.48 5.02 16 20 C 0.49 19.65 7.00 71.24 0.50 20.15 16 21 O -0.56 -27.78 17.01 21.96 0.37 -27.40 16 22 O -0.50 -13.91 13.42 -51.38 -0.69 -14.60 16 23 C -0.16 -6.80 9.34 22.62 0.21 -6.59 16 24 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 26 H 0.07 1.43 8.10 -2.38 -0.02 1.41 16 27 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.11 1.21 8.04 -2.38 -0.02 1.19 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.11 4.38 7.98 -2.39 -0.02 4.37 16 33 H 0.15 6.09 5.24 -3.00 -0.02 6.07 16 34 H 0.42 7.81 9.10 -74.06 -0.67 7.13 16 35 H 0.12 5.26 7.66 -2.91 -0.02 5.24 16 Total: -1.00 -86.26 305.96 5.15 -81.10 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.46 Total: 17.70 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 5.05 Total: 27.57 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -2.02 Total: -96.57 kcal Atomic # 8 Polarization: -78.44 SS G_CDS: -0.37 Total: -78.80 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -86.26 5.15 -81.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600181063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.864 kcal (2) G-P(sol) polarization free energy of solvation -86.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds