Wall clock time and date at job start Tue Mar 31 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37658 * 120.04021 * 2 1 4 4 C 1.39137 * 120.07992 * 179.97438 * 3 2 1 5 5 N 1.39401 * 119.91899 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99687 * 215.61601 * 5 4 3 7 7 O 1.21576 * 119.99594 * 355.46972 * 6 5 4 8 8 N 1.34772 * 119.99895 * 175.47583 * 6 5 4 9 9 C 1.46500 * 119.99678 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46753 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00373 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99526 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00252 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99608 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47104 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47237 * 120.00110 * 14 12 10 17 17 H 1.48505 * 109.46849 * 240.00196 * 14 12 10 18 18 C 1.39175 * 120.15677 * 359.71417 * 4 3 2 19 19 C 1.37618 * 120.07759 * 0.55912 * 18 4 3 20 20 C 1.39798 * 120.03977 * 179.97438 * 2 1 3 21 21 C 1.47442 * 120.08005 * 0.04759 * 20 2 1 22 22 O 1.21510 * 119.99929 * 353.49564 * 21 20 2 23 23 O 1.34752 * 119.99980 * 173.49351 * 21 20 2 24 24 H 1.08993 * 109.47486 * 263.10747 * 1 2 3 25 25 H 1.09001 * 109.47120 * 23.10756 * 1 2 3 26 26 H 1.09003 * 109.47024 * 143.10398 * 1 2 3 27 27 H 1.07994 * 119.96247 * 359.94409 * 3 2 1 28 28 H 0.96998 * 120.00200 * 35.61344 * 5 4 3 29 29 H 0.96998 * 120.00092 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.46965 * 299.98859 * 9 8 6 31 31 H 1.09000 * 109.47734 * 59.99658 * 9 8 6 32 32 H 0.97002 * 119.99682 * 179.97438 * 13 12 10 33 33 H 1.07996 * 119.96118 * 180.30508 * 18 4 3 34 34 H 1.08002 * 120.03814 * 179.72407 * 19 18 4 35 35 H 0.96701 * 116.99532 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1917 0.0000 4 6 3.5875 1.1926 0.0005 5 7 4.2819 2.4014 0.0000 6 6 5.4407 2.5124 -0.6794 7 8 5.9224 1.5375 -1.2231 8 7 6.0654 3.7042 -0.7559 9 6 7.3246 3.8250 -1.4948 10 6 7.8114 5.2497 -1.4281 11 1 7.2403 5.9909 -0.8889 12 6 8.9866 5.6066 -2.0546 13 7 9.6829 4.7038 -2.7100 14 14 9.5904 7.3724 -1.9713 15 1 8.6335 8.1859 -1.1791 16 1 10.9263 7.4087 -1.3238 17 1 9.6911 7.9264 -3.3455 18 6 4.2875 -0.0102 0.0071 19 6 3.6051 -1.2053 0.0014 20 6 2.2068 -1.2102 0.0005 21 6 1.4723 -2.4886 0.0001 22 8 0.2630 -2.4945 0.1184 23 8 2.1421 -3.6505 -0.1317 24 1 -0.3634 -0.1233 1.0201 25 1 -0.3633 0.9452 -0.4033 26 1 -0.3633 -0.8219 -0.6170 27 1 1.6562 2.1270 -0.0009 28 1 3.9312 3.1624 0.4885 29 1 5.6809 4.4820 -0.3223 30 1 8.0704 3.1648 -1.0521 31 1 7.1634 3.5449 -2.5358 32 1 10.5095 4.9551 -3.1511 33 1 5.3674 -0.0058 0.0125 34 1 4.1490 -2.1384 0.0020 35 1 1.6173 -4.4627 -0.1259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600268074.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:26 Heat of formation + Delta-G solvation = -96.770894 kcal Electronic energy + Delta-G solvation = -20403.683137 eV Core-core repulsion = 16980.609489 eV Total energy + Delta-G solvation = -3423.073648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -40.80261 -40.01280 -38.34760 -36.30027 -34.89765 -34.24893 -32.64025 -32.29626 -30.17509 -27.33708 -27.19290 -24.16445 -22.74793 -22.40218 -21.24993 -20.06094 -18.47639 -18.11214 -17.28441 -17.26652 -16.06115 -15.87634 -15.41801 -14.94364 -14.68431 -14.48635 -14.22948 -13.65718 -13.57028 -13.31715 -13.06473 -12.65424 -12.52029 -12.22561 -12.07423 -11.89303 -11.62892 -11.28881 -11.00293 -10.98253 -10.39737 -10.33813 -10.22237 -9.56550 -9.45222 -8.85486 -8.83274 -8.29651 -7.89027 -6.23179 -4.30518 0.63294 1.33400 2.43407 2.90813 3.01445 3.19656 3.27380 3.30098 3.50624 3.84216 4.26002 4.68653 4.72039 4.78722 5.02651 5.13451 5.14540 5.36631 5.42763 5.63244 5.65222 5.78955 6.00103 6.15599 6.27755 6.35944 6.46579 6.50208 6.89327 6.99497 7.27869 7.40438 7.43669 7.71361 7.78587 7.90498 8.57269 8.73797 9.04934 9.36433 10.86946 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.046672 B = 0.002945 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.788426 B = 9504.301033 C = 9978.148634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.004 3.996 3 C -0.175 4.175 4 C 0.228 3.772 5 N -0.694 5.694 6 C 0.689 3.311 7 O -0.578 6.578 8 N -0.718 5.718 9 C 0.265 3.735 10 C -0.545 4.545 11 H 0.064 0.936 12 C 0.064 3.936 13 N -0.884 5.884 14 Si 0.905 3.095 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.145 4.145 19 C -0.034 4.034 20 C -0.170 4.170 21 C 0.530 3.470 22 O -0.519 6.519 23 O -0.514 6.514 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.134 0.866 28 H 0.407 0.593 29 H 0.390 0.610 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.158 -9.458 7.539 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 C -0.196 4.196 4 C 0.130 3.870 5 N -0.341 5.341 6 C 0.389 3.611 7 O -0.455 6.455 8 N -0.370 5.370 9 C 0.144 3.856 10 C -0.583 4.583 11 H 0.082 0.918 12 C -0.140 4.140 13 N -0.521 5.521 14 Si 0.732 3.268 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.166 4.166 19 C -0.053 4.053 20 C -0.172 4.172 21 C 0.377 3.623 22 O -0.410 6.410 23 O -0.325 6.325 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.152 0.848 28 H 0.242 0.758 29 H 0.222 0.778 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.156 0.844 35 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -15.485 -9.896 6.891 19.626 hybrid contribution -0.181 1.208 0.373 1.277 sum -15.666 -8.688 7.264 19.330 Atomic orbital electron populations 1.21090 0.89918 1.03141 1.03513 1.19667 0.96404 0.90645 0.92997 1.20689 0.91965 0.98153 1.08768 1.17828 0.90354 0.85826 0.93037 1.42849 1.24437 1.12896 1.53917 1.16171 0.79827 0.85263 0.79792 1.90896 1.66217 1.37006 1.51386 1.45810 1.27044 1.07615 1.56511 1.19099 0.77916 0.97173 0.91406 1.21227 1.07999 0.93968 1.35118 0.91797 1.24945 0.96191 0.98108 0.94727 1.69980 1.15417 1.33583 1.33120 0.86339 0.78756 0.83718 0.77953 1.19643 1.20746 1.20755 1.21410 1.02244 0.90237 1.02671 1.21311 0.92236 0.98710 0.93092 1.18755 0.93565 0.89593 1.15285 1.20866 0.85286 0.84202 0.71938 1.90830 1.15376 1.87700 1.47129 1.84604 1.45432 1.17148 1.85338 0.90544 0.92020 0.89064 0.84843 0.75799 0.77771 0.95355 0.95385 0.92393 0.83066 0.84352 0.73133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.71 36.00 0.31 -0.92 16 2 C 0.00 0.05 5.91 -104.25 -0.62 -0.57 16 3 C -0.17 -2.04 9.57 -39.46 -0.38 -2.42 16 4 C 0.23 3.18 6.28 -83.74 -0.53 2.66 16 5 N -0.69 -9.77 5.32 -14.22 -0.08 -9.84 16 6 C 0.69 13.19 8.40 -86.92 -0.73 12.46 16 7 O -0.58 -13.28 13.80 5.30 0.07 -13.21 16 8 N -0.72 -14.27 5.55 -66.41 -0.37 -14.64 16 9 C 0.26 6.74 5.43 -5.19 -0.03 6.72 16 10 C -0.54 -14.27 9.28 -34.44 -0.32 -14.59 16 11 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.88 -25.42 13.29 55.43 0.74 -24.69 16 14 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.15 -2.15 8.66 -39.46 -0.34 -2.49 16 19 C -0.03 -0.44 9.60 -39.21 -0.38 -0.82 16 20 C -0.17 -2.12 5.87 -104.97 -0.62 -2.74 16 21 C 0.53 6.18 8.19 34.48 0.28 6.47 16 22 O -0.52 -6.78 14.13 -19.27 -0.27 -7.06 16 23 O -0.51 -4.58 12.69 -40.63 -0.52 -5.10 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 26 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 27 H 0.13 1.23 8.05 -52.49 -0.42 0.81 16 28 H 0.41 4.20 8.83 -40.82 -0.36 3.84 16 29 H 0.39 6.46 8.34 -40.82 -0.34 6.11 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.15 2.55 6.27 -52.49 -0.33 2.22 16 34 H 0.14 1.54 7.62 -52.49 -0.40 1.14 16 35 H 0.41 1.70 9.11 45.56 0.42 2.11 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -33.14 309.46 -7.18 -40.32 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -2.96 Total: 8.84 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -3.43 Total: 5.40 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.29 Total: -49.17 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.71 Total: -25.36 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.14 -7.18 -40.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600268074.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.454 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds