Wall clock time and date at job start Tue Mar 31 2020 00:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37658 * 120.04021 * 2 1 4 4 C 1.39137 * 120.07992 * 179.97438 * 3 2 1 5 5 N 1.39401 * 119.91899 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99687 * 215.61601 * 5 4 3 7 7 O 1.21576 * 119.99594 * 355.46972 * 6 5 4 8 8 N 1.34772 * 119.99895 * 175.47583 * 6 5 4 9 9 C 1.46500 * 119.99678 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46753 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00373 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99526 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00252 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99608 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47104 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47237 * 120.00110 * 14 12 10 17 17 H 1.48505 * 109.46849 * 240.00196 * 14 12 10 18 18 C 1.39175 * 120.15677 * 359.71417 * 4 3 2 19 19 C 1.37618 * 120.07759 * 0.55912 * 18 4 3 20 20 C 1.39798 * 120.03977 * 179.97438 * 2 1 3 21 21 C 1.47442 * 120.08005 * 0.04759 * 20 2 1 22 22 O 1.21510 * 119.99929 * 353.49564 * 21 20 2 23 23 O 1.34752 * 119.99980 * 173.49351 * 21 20 2 24 24 H 1.08993 * 109.47486 * 263.10747 * 1 2 3 25 25 H 1.09001 * 109.47120 * 23.10756 * 1 2 3 26 26 H 1.09003 * 109.47024 * 143.10398 * 1 2 3 27 27 H 1.07994 * 119.96247 * 359.94409 * 3 2 1 28 28 H 0.96998 * 120.00200 * 35.61344 * 5 4 3 29 29 H 0.96998 * 120.00092 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.46965 * 299.98859 * 9 8 6 31 31 H 1.09000 * 109.47734 * 59.99658 * 9 8 6 32 32 H 0.97002 * 119.99682 * 179.97438 * 13 12 10 33 33 H 1.07996 * 119.96118 * 180.30508 * 18 4 3 34 34 H 1.08002 * 120.03814 * 179.72407 * 19 18 4 35 35 H 0.96701 * 116.99532 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1917 0.0000 4 6 3.5875 1.1926 0.0005 5 7 4.2819 2.4014 0.0000 6 6 5.4407 2.5124 -0.6794 7 8 5.9224 1.5375 -1.2231 8 7 6.0654 3.7042 -0.7559 9 6 7.3246 3.8250 -1.4948 10 6 7.8114 5.2497 -1.4281 11 1 7.2403 5.9909 -0.8889 12 6 8.9866 5.6066 -2.0546 13 7 9.6829 4.7038 -2.7100 14 14 9.5904 7.3724 -1.9713 15 1 8.6335 8.1859 -1.1791 16 1 10.9263 7.4087 -1.3238 17 1 9.6911 7.9264 -3.3455 18 6 4.2875 -0.0102 0.0071 19 6 3.6051 -1.2053 0.0014 20 6 2.2068 -1.2102 0.0005 21 6 1.4723 -2.4886 0.0001 22 8 0.2630 -2.4945 0.1184 23 8 2.1421 -3.6505 -0.1317 24 1 -0.3634 -0.1233 1.0201 25 1 -0.3633 0.9452 -0.4033 26 1 -0.3633 -0.8219 -0.6170 27 1 1.6562 2.1270 -0.0009 28 1 3.9312 3.1624 0.4885 29 1 5.6809 4.4820 -0.3223 30 1 8.0704 3.1648 -1.0521 31 1 7.1634 3.5449 -2.5358 32 1 10.5095 4.9551 -3.1511 33 1 5.3674 -0.0058 0.0125 34 1 4.1490 -2.1384 0.0020 35 1 1.6173 -4.4627 -0.1259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600268074.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:22 Heat of formation + Delta-G solvation = -121.357730 kcal Electronic energy + Delta-G solvation = -20404.749302 eV Core-core repulsion = 16980.609489 eV Total energy + Delta-G solvation = -3424.139813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 5.54 seconds Orbital eigenvalues (eV) -41.90530 -41.19318 -39.50698 -37.16471 -36.38428 -35.87172 -34.41899 -33.42174 -31.36453 -29.10040 -28.22482 -25.49418 -24.33560 -23.40439 -22.56145 -21.41007 -19.92186 -19.06996 -18.58501 -18.22158 -17.89462 -16.87897 -16.73776 -16.60343 -16.10458 -15.76337 -15.42091 -15.01174 -14.58605 -14.50896 -14.16563 -14.07544 -14.01141 -13.60004 -13.30437 -13.06556 -12.86485 -12.75471 -12.46050 -12.31450 -12.20158 -11.53289 -11.44648 -11.32238 -11.02537 -10.82084 -9.97494 -9.82884 -9.21489 -8.28655 -6.44696 -0.38468 0.33500 1.42289 1.45581 1.45990 1.58096 1.65509 2.08185 2.16355 2.39114 2.73980 3.07166 3.34136 3.75192 3.80713 4.10095 4.17865 4.39402 4.44517 4.77398 4.85624 4.87886 5.00907 5.07922 5.21980 5.24536 5.26428 5.38456 5.45453 5.48804 5.62096 5.67827 5.82692 5.89554 6.12111 6.66368 7.03035 7.11989 7.25320 7.54251 8.83636 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.046672 B = 0.002945 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.788426 B = 9504.301033 C = 9978.148634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.000 4.000 3 C -0.158 4.158 4 C 0.206 3.794 5 N -0.671 5.671 6 C 0.691 3.309 7 O -0.621 6.621 8 N -0.712 5.712 9 C 0.284 3.716 10 C -0.554 4.554 11 H 0.085 0.915 12 C 0.005 3.995 13 N -0.930 5.930 14 Si 0.984 3.016 15 H -0.253 1.253 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.166 4.166 19 C -0.033 4.033 20 C -0.175 4.175 21 C 0.535 3.465 22 O -0.534 6.534 23 O -0.509 6.509 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.166 0.834 28 H 0.427 0.573 29 H 0.409 0.591 30 H -0.009 1.009 31 H -0.010 1.010 32 H 0.269 0.731 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.240 -8.115 8.536 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.001 4.001 3 C -0.178 4.178 4 C 0.109 3.891 5 N -0.320 5.320 6 C 0.392 3.608 7 O -0.501 6.501 8 N -0.365 5.365 9 C 0.161 3.839 10 C -0.592 4.592 11 H 0.103 0.897 12 C -0.195 4.195 13 N -0.568 5.568 14 Si 0.808 3.192 15 H -0.176 1.176 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.186 4.186 19 C -0.052 4.052 20 C -0.177 4.177 21 C 0.382 3.618 22 O -0.426 6.426 23 O -0.324 6.324 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.184 0.816 28 H 0.267 0.733 29 H 0.245 0.755 30 H 0.009 0.991 31 H 0.008 0.992 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.167 0.833 35 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -17.648 -8.562 7.944 21.163 hybrid contribution 0.378 0.602 0.082 0.715 sum -17.271 -7.960 8.026 20.641 Atomic orbital electron populations 1.21081 0.88348 1.03910 1.03814 1.19994 0.97516 0.90434 0.92177 1.20923 0.90672 0.99507 1.06718 1.18000 0.91343 0.85109 0.94673 1.42398 1.22598 1.13953 1.53012 1.16249 0.80746 0.84202 0.79652 1.90878 1.67715 1.38332 1.53198 1.45328 1.25775 1.08889 1.56532 1.18500 0.79332 0.96584 0.89530 1.21622 1.08297 0.94296 1.34963 0.89651 1.26028 0.96403 1.02978 0.94098 1.70138 1.16076 1.36288 1.34336 0.85118 0.78280 0.77786 0.78064 1.17587 1.20582 1.20613 1.21288 1.01123 0.91773 1.04452 1.21360 0.92647 0.98461 0.92746 1.19006 0.93424 0.90749 1.14557 1.20674 0.84913 0.84603 0.71653 1.90832 1.15857 1.88057 1.47877 1.84557 1.45635 1.17534 1.84624 0.89874 0.89810 0.90217 0.81646 0.73332 0.75541 0.99078 0.99231 0.92244 0.85913 0.83280 0.70604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 8.71 71.24 0.62 -1.41 16 2 C 0.00 0.00 5.91 -19.62 -0.12 -0.12 16 3 C -0.16 -3.29 9.57 22.35 0.21 -3.07 16 4 C 0.21 5.58 6.28 38.38 0.24 5.82 16 5 N -0.67 -18.25 5.32 -317.16 -1.69 -19.93 16 6 C 0.69 26.90 8.40 179.05 1.50 28.40 16 7 O -0.62 -29.94 13.80 -3.95 -0.05 -29.99 16 8 N -0.71 -28.52 5.55 -482.30 -2.68 -31.20 16 9 C 0.28 15.01 5.43 85.64 0.46 15.47 16 10 C -0.55 -29.04 9.28 25.60 0.24 -28.81 16 11 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 12 C 0.00 0.25 5.46 84.66 0.46 0.72 16 13 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 14 Si 0.98 41.24 29.54 68.60 2.03 43.27 16 15 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 16 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 18 C -0.17 -5.02 8.66 22.35 0.19 -4.82 16 19 C -0.03 -0.85 9.60 22.51 0.22 -0.63 16 20 C -0.18 -4.15 5.87 -20.09 -0.12 -4.27 16 21 C 0.53 11.60 8.19 70.25 0.58 12.17 16 22 O -0.53 -12.99 14.13 19.80 0.28 -12.71 16 23 O -0.51 -8.17 12.69 -56.63 -0.72 -8.89 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.10 8.03 -2.39 -0.02 1.08 16 26 H 0.08 1.65 5.88 -2.39 -0.01 1.63 16 27 H 0.17 2.35 8.05 -2.91 -0.02 2.32 16 28 H 0.43 7.86 8.83 -92.71 -0.82 7.04 16 29 H 0.41 13.04 8.34 -92.71 -0.77 12.26 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.12 4.43 6.27 -2.91 -0.02 4.41 16 34 H 0.15 3.32 7.62 -2.91 -0.02 3.30 16 35 H 0.43 2.64 9.11 -74.06 -0.67 1.97 16 Total: -1.00 -74.07 309.46 0.85 -73.22 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -1.09 Total: 21.43 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 4.49 Total: 19.44 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.08 Total: -105.76 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.49 Total: -51.60 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -74.07 0.85 -73.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600268074.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.138 kcal (2) G-P(sol) polarization free energy of solvation -74.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.54 seconds