Wall clock time and date at job start Tue Mar 31 2020 00:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.88219 * 2 1 4 4 C 1.38991 * 120.22595 * 179.97438 * 3 2 1 5 5 N 1.39718 * 119.99602 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99495 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46838 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00094 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99792 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99826 * 180.02562 * 9 7 6 11 11 H 1.08007 * 119.99907 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99982 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99734 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00104 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47170 * 90.00171 * 14 12 10 16 16 H 1.48499 * 109.47180 * 210.00336 * 14 12 10 17 17 H 1.48504 * 109.46874 * 330.00425 * 14 12 10 18 18 C 1.38655 * 120.00102 * 0.04343 * 4 3 2 19 19 C 1.39515 * 119.76784 * 359.97438 * 18 4 3 20 20 C 1.47745 * 120.11521 * 179.97438 * 19 18 4 21 21 O 1.21470 * 119.99701 * 0.02562 * 20 19 18 22 22 O 1.34708 * 120.00246 * 180.02562 * 20 19 18 23 23 C 1.37971 * 119.88179 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47120 * 269.97699 * 1 2 3 25 25 H 1.09005 * 109.47010 * 29.97670 * 1 2 3 26 26 H 1.08994 * 109.47206 * 149.97286 * 1 2 3 27 27 H 1.07997 * 119.88528 * 359.97438 * 3 2 1 28 28 H 0.96995 * 120.00532 * 359.97438 * 5 4 3 29 29 H 1.09004 * 109.47513 * 299.99210 * 6 5 4 30 30 H 1.08999 * 109.47534 * 59.99846 * 6 5 4 31 31 H 0.96992 * 120.00233 * 359.97438 * 9 7 6 32 32 H 0.97003 * 119.99888 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.11923 * 180.25764 * 18 4 3 34 34 H 0.96698 * 117.00318 * 179.97438 * 22 20 19 35 35 H 1.07998 * 119.99919 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1987 0.0000 4 6 3.5857 1.2071 0.0005 5 7 4.2770 2.4213 0.0011 6 6 5.7419 2.4301 0.0011 7 6 6.2357 3.8539 0.0011 8 8 5.4420 4.7711 0.0006 9 7 7.5593 4.1081 0.0005 10 6 8.0085 5.4034 0.0011 11 1 7.3017 6.2201 0.0015 12 6 9.3731 5.6655 0.0011 13 7 9.8036 6.9071 0.0011 14 14 10.5955 4.2531 0.0011 15 1 10.9195 3.8788 -1.3990 16 1 11.8362 4.6722 0.7012 17 1 10.0025 3.0853 0.7011 18 6 4.2862 0.0105 0.0002 19 6 3.5910 -1.1991 -0.0002 20 6 4.3297 -2.4787 -0.0012 21 8 5.5444 -2.4787 -0.0012 22 8 3.6561 -3.6453 -0.0021 23 6 2.1944 -1.1963 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6521 2.1318 -0.0004 28 1 3.7870 3.2584 0.0007 29 1 6.1084 1.9181 0.8909 30 1 6.1084 1.9188 -0.8891 31 1 8.1940 3.3747 0.0005 32 1 10.7562 7.0902 0.0014 33 1 5.3662 0.0147 0.0048 34 1 4.1827 -4.4563 -0.0031 35 1 1.6525 -2.1305 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600278255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:02 Heat of formation + Delta-G solvation = -101.560562 kcal Electronic energy + Delta-G solvation = -20364.961303 eV Core-core repulsion = 16941.679960 eV Total energy + Delta-G solvation = -3423.281344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.56507 -39.33324 -38.46730 -36.25550 -35.52457 -34.09395 -32.60654 -31.84345 -30.39987 -27.08562 -26.95553 -24.91972 -24.16203 -21.49648 -20.61367 -19.52206 -18.59848 -18.23024 -17.56540 -16.45519 -16.07541 -15.77260 -15.65639 -14.98705 -14.88584 -14.83025 -14.08435 -13.88665 -13.57377 -13.37258 -13.14121 -12.90784 -12.55402 -12.31996 -12.18873 -12.02186 -11.79490 -11.69929 -11.32050 -11.26283 -10.71876 -10.66498 -10.10469 -10.08457 -9.71890 -8.91614 -8.80123 -8.33254 -7.41203 -6.42974 -3.95789 0.63838 1.45002 2.48677 2.81574 2.97498 3.02232 3.10670 3.46172 3.52398 3.75561 4.01426 4.50741 4.61925 4.82077 5.06554 5.11023 5.16700 5.21395 5.37708 5.44685 5.47003 5.52918 5.70487 5.70842 5.76474 5.82755 6.17468 6.21364 6.31204 6.43920 6.65696 7.25947 7.45322 7.72815 7.86555 8.00997 8.42607 8.79392 9.27161 9.60691 10.69208 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.003809 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.659955 B = 7349.785348 C = 8632.999315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.163 4.163 4 C 0.222 3.778 5 N -0.721 5.721 6 C 0.107 3.893 7 C 0.439 3.561 8 O -0.577 6.577 9 N -0.576 5.576 10 C -0.311 4.311 11 H 0.121 0.879 12 C 0.046 3.954 13 N -0.874 5.874 14 Si 0.879 3.121 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.267 1.267 18 C -0.146 4.146 19 C -0.078 4.078 20 C 0.527 3.473 21 O -0.513 6.513 22 O -0.513 6.513 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.415 0.585 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.374 0.626 32 H 0.276 0.724 33 H 0.136 0.864 34 H 0.412 0.588 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 -19.497 0.004 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.186 4.186 4 C 0.116 3.884 5 N -0.352 5.352 6 C -0.022 4.022 7 C 0.225 3.775 8 O -0.461 6.461 9 N -0.214 5.214 10 C -0.440 4.440 11 H 0.139 0.861 12 C -0.159 4.159 13 N -0.513 5.513 14 Si 0.705 3.295 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.192 1.192 18 C -0.169 4.169 19 C -0.080 4.080 20 C 0.372 3.628 21 O -0.402 6.402 22 O -0.324 6.324 23 C -0.151 4.151 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.146 0.854 28 H 0.254 0.746 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.207 0.793 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.270 0.730 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.866 -18.313 0.003 22.970 hybrid contribution 1.505 -1.189 0.023 1.919 sum -12.361 -19.502 0.026 23.090 Atomic orbital electron populations 1.20793 0.90756 1.02926 1.02512 1.19557 0.96001 0.92090 0.97721 1.20739 0.91878 0.98534 1.07420 1.17614 0.91030 0.86097 0.93665 1.44487 1.04918 1.05635 1.80163 1.21027 0.81643 0.97173 1.02321 1.19577 0.83290 0.89559 0.85100 1.90544 1.54284 1.45783 1.55502 1.42130 1.05312 1.08511 1.65458 1.19441 0.92953 0.82816 1.48743 0.86105 1.25066 0.96986 0.96719 0.97097 1.69619 1.15604 1.17963 1.48081 0.86671 0.81808 0.81850 0.79159 1.19361 1.19930 1.19249 1.20690 1.00486 0.89510 1.06261 1.18637 0.93386 0.89296 1.06686 1.21019 0.85525 0.84339 0.71934 1.90896 1.15150 1.88104 1.46048 1.84566 1.45025 1.16894 1.85934 1.20959 0.92268 0.98134 1.03692 0.90961 0.91328 0.91367 0.85392 0.74608 0.90324 0.90319 0.79277 0.91352 0.84580 0.72982 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.05 -0.54 5.87 -104.71 -0.61 -1.16 16 3 C -0.16 -1.91 9.53 -39.30 -0.37 -2.28 16 4 C 0.22 3.04 6.65 -83.83 -0.56 2.48 16 5 N -0.72 -11.12 5.71 -59.84 -0.34 -11.46 16 6 C 0.11 1.75 5.39 -5.19 -0.03 1.72 16 7 C 0.44 9.59 7.85 -10.98 -0.09 9.50 16 8 O -0.58 -14.69 15.24 5.55 0.08 -14.61 16 9 N -0.58 -13.34 5.09 -10.96 -0.06 -13.40 16 10 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 11 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 12 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 13 N -0.87 -24.99 13.96 55.50 0.77 -24.21 16 14 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 18 C -0.15 -2.00 8.86 -38.95 -0.34 -2.34 16 19 C -0.08 -0.97 5.87 -105.00 -0.62 -1.59 16 20 C 0.53 6.37 8.27 34.62 0.29 6.65 16 21 O -0.51 -7.68 17.13 -19.24 -0.33 -8.01 16 22 O -0.51 -4.31 12.68 -40.51 -0.51 -4.82 16 23 C -0.13 -1.38 9.26 -39.15 -0.36 -1.75 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.41 6.73 7.45 -40.82 -0.30 6.43 16 29 H 0.08 1.16 7.94 -51.93 -0.41 0.75 16 30 H 0.08 1.16 7.95 -51.93 -0.41 0.74 16 31 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 32 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.14 1.90 6.32 -52.49 -0.33 1.57 16 34 H 0.41 1.58 9.11 45.56 0.42 1.99 16 35 H 0.13 1.16 7.61 -52.49 -0.40 0.76 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -33.25 311.68 -5.91 -39.16 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -2.92 Total: 15.21 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -2.59 Total: 3.17 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.38 Total: -49.08 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.76 Total: -27.44 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.25 -5.91 -39.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600278255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.401 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds