Wall clock time and date at job start Tue Mar 31 2020 00:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.88219 * 2 1 4 4 C 1.38991 * 120.22595 * 179.97438 * 3 2 1 5 5 N 1.39718 * 119.99602 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99495 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46838 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00094 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99792 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99826 * 180.02562 * 9 7 6 11 11 H 1.08007 * 119.99907 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99982 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99734 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00104 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47170 * 90.00171 * 14 12 10 16 16 H 1.48499 * 109.47180 * 210.00336 * 14 12 10 17 17 H 1.48504 * 109.46874 * 330.00425 * 14 12 10 18 18 C 1.38655 * 120.00102 * 0.04343 * 4 3 2 19 19 C 1.39515 * 119.76784 * 359.97438 * 18 4 3 20 20 C 1.47745 * 120.11521 * 179.97438 * 19 18 4 21 21 O 1.21470 * 119.99701 * 0.02562 * 20 19 18 22 22 O 1.34708 * 120.00246 * 180.02562 * 20 19 18 23 23 C 1.37971 * 119.88179 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47120 * 269.97699 * 1 2 3 25 25 H 1.09005 * 109.47010 * 29.97670 * 1 2 3 26 26 H 1.08994 * 109.47206 * 149.97286 * 1 2 3 27 27 H 1.07997 * 119.88528 * 359.97438 * 3 2 1 28 28 H 0.96995 * 120.00532 * 359.97438 * 5 4 3 29 29 H 1.09004 * 109.47513 * 299.99210 * 6 5 4 30 30 H 1.08999 * 109.47534 * 59.99846 * 6 5 4 31 31 H 0.96992 * 120.00233 * 359.97438 * 9 7 6 32 32 H 0.97003 * 119.99888 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.11923 * 180.25764 * 18 4 3 34 34 H 0.96698 * 117.00318 * 179.97438 * 22 20 19 35 35 H 1.07998 * 119.99919 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1987 0.0000 4 6 3.5857 1.2071 0.0005 5 7 4.2770 2.4213 0.0011 6 6 5.7419 2.4301 0.0011 7 6 6.2357 3.8539 0.0011 8 8 5.4420 4.7711 0.0006 9 7 7.5593 4.1081 0.0005 10 6 8.0085 5.4034 0.0011 11 1 7.3017 6.2201 0.0015 12 6 9.3731 5.6655 0.0011 13 7 9.8036 6.9071 0.0011 14 14 10.5955 4.2531 0.0011 15 1 10.9195 3.8788 -1.3990 16 1 11.8362 4.6722 0.7012 17 1 10.0025 3.0853 0.7011 18 6 4.2862 0.0105 0.0002 19 6 3.5910 -1.1991 -0.0002 20 6 4.3297 -2.4787 -0.0012 21 8 5.5444 -2.4787 -0.0012 22 8 3.6561 -3.6453 -0.0021 23 6 2.1944 -1.1963 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6521 2.1318 -0.0004 28 1 3.7870 3.2584 0.0007 29 1 6.1084 1.9181 0.8909 30 1 6.1084 1.9188 -0.8891 31 1 8.1940 3.3747 0.0005 32 1 10.7562 7.0902 0.0014 33 1 5.3662 0.0147 0.0048 34 1 4.1827 -4.4563 -0.0031 35 1 1.6525 -2.1305 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600278255.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:01 Heat of formation + Delta-G solvation = -126.990543 kcal Electronic energy + Delta-G solvation = -20366.064030 eV Core-core repulsion = 16941.679960 eV Total energy + Delta-G solvation = -3424.384070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.47181 -40.63757 -39.85824 -37.08437 -36.74610 -35.95956 -33.86573 -33.44996 -31.53362 -28.46779 -27.78513 -26.13738 -25.59051 -22.42888 -21.79394 -21.17309 -20.33473 -19.14866 -18.67699 -17.66243 -17.32079 -16.94139 -16.67099 -16.46033 -16.44933 -16.03289 -15.42531 -14.87967 -14.79142 -14.42338 -14.39596 -14.18282 -14.13342 -13.82547 -13.09147 -12.99040 -12.89059 -12.61316 -12.55913 -12.47490 -12.22036 -12.02263 -11.63486 -11.60669 -11.11517 -10.66989 -10.34765 -9.78209 -8.47980 -8.46650 -6.10274 -0.27816 0.55114 1.29007 1.32103 1.41964 1.57985 1.77900 1.99700 2.18109 2.27452 2.84421 2.91829 3.08255 3.82335 3.94868 4.01725 4.16271 4.32161 4.33144 4.40152 4.45145 4.53952 4.72111 4.94520 4.95324 5.19806 5.30180 5.32772 5.44346 5.57986 5.61932 5.79496 5.84954 6.21583 6.48699 6.70174 6.76483 6.99028 7.26865 7.76990 8.68750 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.003809 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.659955 B = 7349.785348 C = 8632.999315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.051 4.051 3 C -0.165 4.165 4 C 0.205 3.795 5 N -0.733 5.733 6 C 0.122 3.878 7 C 0.443 3.557 8 O -0.617 6.617 9 N -0.579 5.579 10 C -0.334 4.334 11 H 0.061 0.939 12 C -0.008 4.008 13 N -0.926 5.926 14 Si 0.960 3.040 15 H -0.256 1.256 16 H -0.272 1.272 17 H -0.233 1.233 18 C -0.161 4.161 19 C -0.092 4.092 20 C 0.534 3.466 21 O -0.549 6.549 22 O -0.499 6.499 23 C -0.118 4.118 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.408 0.592 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.392 0.608 32 H 0.282 0.718 33 H 0.129 0.871 34 H 0.433 0.567 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 -23.334 0.040 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.051 4.051 3 C -0.188 4.188 4 C 0.102 3.898 5 N -0.365 5.365 6 C -0.006 4.006 7 C 0.231 3.769 8 O -0.503 6.503 9 N -0.219 5.219 10 C -0.463 4.463 11 H 0.079 0.921 12 C -0.208 4.208 13 N -0.566 5.566 14 Si 0.780 3.220 15 H -0.180 1.180 16 H -0.197 1.197 17 H -0.156 1.156 18 C -0.184 4.184 19 C -0.094 4.094 20 C 0.380 3.620 21 O -0.441 6.441 22 O -0.313 6.313 23 C -0.138 4.138 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.155 0.845 28 H 0.246 0.754 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.295 0.705 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.766 -22.224 0.040 26.682 hybrid contribution 1.529 -0.024 0.008 1.529 sum -13.237 -22.248 0.049 25.888 Atomic orbital electron populations 1.20872 0.88282 1.04123 1.03599 1.19929 0.97721 0.91290 0.96197 1.20994 0.91289 0.99775 1.06717 1.17735 0.91740 0.85304 0.95055 1.44420 1.04278 1.06073 1.81742 1.20923 0.82553 0.92720 1.04395 1.20628 0.82494 0.91621 0.82149 1.90525 1.55368 1.48073 1.56362 1.41938 1.06261 1.07287 1.66382 1.19028 0.92754 0.83555 1.50928 0.92101 1.26080 0.98844 1.00209 0.95639 1.69784 1.16540 1.21035 1.49259 0.85433 0.78083 0.78409 0.80113 1.18027 1.19728 1.15595 1.20696 1.00316 0.90084 1.07315 1.18796 0.94258 0.89228 1.07127 1.20945 0.84930 0.85084 0.71064 1.90883 1.16593 1.88675 1.47937 1.84507 1.44831 1.16958 1.84994 1.21270 0.91609 0.99268 1.01658 0.89787 0.90721 0.89687 0.84473 0.75411 0.88155 0.88075 0.77204 0.90877 0.85353 0.70487 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.51 16 2 C -0.05 -0.89 5.87 -19.92 -0.12 -1.01 16 3 C -0.17 -3.59 9.53 22.45 0.21 -3.38 16 4 C 0.21 5.39 6.65 38.16 0.25 5.65 16 5 N -0.73 -22.28 5.71 -343.23 -1.96 -24.24 16 6 C 0.12 3.87 5.39 85.63 0.46 4.33 16 7 C 0.44 19.59 7.85 87.66 0.69 20.28 16 8 O -0.62 -32.74 15.24 -3.06 -0.05 -32.78 16 9 N -0.58 -26.89 5.09 -306.97 -1.56 -28.45 16 10 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 11 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 12 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 13 N -0.93 -54.97 13.96 21.66 0.30 -54.67 16 14 Si 0.96 38.45 27.74 68.60 1.90 40.35 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 17 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 18 C -0.16 -4.18 8.86 22.68 0.20 -3.98 16 19 C -0.09 -2.10 5.87 -20.11 -0.12 -2.22 16 20 C 0.53 11.75 8.27 70.34 0.58 12.33 16 21 O -0.55 -15.68 17.13 19.93 0.34 -15.33 16 22 O -0.50 -6.80 12.68 -56.18 -0.71 -7.51 16 23 C -0.12 -2.14 9.26 22.55 0.21 -1.93 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.75 8.08 -2.38 -0.02 0.74 16 26 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 27 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.41 13.44 7.45 -92.71 -0.69 12.75 16 29 H 0.10 2.78 7.94 -2.38 -0.02 2.76 16 30 H 0.10 2.78 7.95 -2.39 -0.02 2.76 16 31 H 0.39 15.20 5.76 -92.71 -0.53 14.67 16 32 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.13 3.45 6.32 -2.91 -0.02 3.44 16 34 H 0.43 1.93 9.11 -74.06 -0.67 1.25 16 35 H 0.15 2.06 7.61 -2.91 -0.02 2.04 16 Total: -1.00 -76.70 311.68 1.89 -74.81 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -0.79 Total: 36.58 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 4.41 Total: 11.24 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.22 Total: -107.36 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -0.42 Total: -55.63 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -76.70 1.89 -74.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600278255.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.176 kcal (2) G-P(sol) polarization free energy of solvation -76.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds