Wall clock time and date at job start Tue Mar 31 2020 01:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38673 * 120.31376 * 2 1 4 4 C 1.38538 * 118.49525 * 180.02562 * 3 2 1 5 5 C 1.39402 * 119.05697 * 0.02562 * 4 3 2 6 6 C 1.48008 * 119.73543 * 180.02562 * 5 4 3 7 7 O 1.21566 * 119.99650 * 353.40463 * 6 5 4 8 8 N 1.34769 * 120.00145 * 173.40716 * 6 5 4 9 9 C 1.36789 * 120.00024 * 185.22305 * 8 6 5 10 10 H 1.07995 * 120.00160 * 180.24271 * 9 8 6 11 11 C 1.39115 * 119.99794 * 0.24605 * 9 8 6 12 12 N 1.31316 * 120.00257 * 85.58096 * 11 9 8 13 13 Si 1.86802 * 119.99956 * 265.58193 * 11 9 8 14 14 H 1.48508 * 109.46914 * 64.97848 * 13 11 9 15 15 H 1.48499 * 109.47193 * 184.97580 * 13 11 9 16 16 H 1.48493 * 109.47027 * 304.98222 * 13 11 9 17 17 C 1.46494 * 120.00243 * 5.22451 * 8 6 5 18 18 C 1.53006 * 109.47184 * 82.98753 * 17 8 6 19 19 C 1.50701 * 109.47001 * 179.97438 * 18 17 8 20 20 O 1.20823 * 119.99977 * 359.97438 * 19 18 17 21 21 O 1.34225 * 119.99916 * 179.97438 * 19 18 17 22 22 N 1.32792 * 120.53833 * 359.97328 * 5 4 3 23 23 C 1.31534 * 121.62751 * 0.04786 * 22 5 4 24 24 H 1.09006 * 109.47145 * 89.99822 * 1 2 3 25 25 H 1.08998 * 109.46691 * 209.99650 * 1 2 3 26 26 H 1.08996 * 109.47132 * 329.99822 * 1 2 3 27 27 H 1.07998 * 120.75191 * 0.02562 * 3 2 1 28 28 H 1.08008 * 120.47024 * 179.72875 * 4 3 2 29 29 H 0.96999 * 120.00599 * 184.91576 * 12 11 9 30 30 H 1.09000 * 109.47060 * 202.98495 * 17 8 6 31 31 H 1.09004 * 109.47173 * 322.98556 * 17 8 6 32 32 H 1.08992 * 109.47104 * 300.00098 * 18 17 8 33 33 H 1.09000 * 109.46786 * 60.00026 * 18 17 8 34 34 H 0.96702 * 117.00191 * 180.02562 * 21 19 18 35 35 H 1.07993 * 119.54017 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1971 0.0000 4 6 3.5917 1.1532 -0.0005 5 6 4.2297 -0.0863 -0.0016 6 6 5.7084 -0.1507 -0.0016 7 8 6.3611 0.8677 -0.1216 8 7 6.3311 -1.3385 0.1313 9 6 7.6939 -1.3881 0.2387 10 1 8.1932 -2.3401 0.3414 11 6 8.4366 -0.2120 0.2158 12 7 8.6272 0.4659 1.3242 13 14 9.1627 0.4030 -1.3917 14 1 8.0650 0.7641 -2.3245 15 1 10.0032 1.5989 -1.1298 16 1 9.9968 -0.6651 -1.9987 17 6 5.5486 -2.5766 0.1608 18 6 5.2364 -3.0169 -1.2709 19 6 4.4319 -4.2909 -1.2405 20 8 4.1389 -4.7952 -0.1824 21 8 4.0411 -4.8653 -2.3889 22 7 3.5216 -1.2097 -0.0016 23 6 2.2063 -1.1960 -0.0015 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6845 2.1423 0.0004 28 1 4.1686 2.0662 -0.0050 29 1 9.0834 1.3215 1.2972 30 1 6.1207 -3.3561 0.6641 31 1 4.6167 -2.4047 0.6995 32 1 4.6644 -2.2375 -1.7741 33 1 6.1683 -3.1888 -1.8094 34 1 3.5267 -5.6812 -2.3189 35 1 1.6642 -2.1299 -0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600331204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:12 Heat of formation + Delta-G solvation = -51.478608 kcal Electronic energy + Delta-G solvation = -22031.549957 eV Core-core repulsion = 18610.440330 eV Total energy + Delta-G solvation = -3421.109627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.13826 -39.65495 -37.88839 -35.90513 -34.53918 -33.44566 -32.57464 -31.20765 -30.29268 -27.50689 -25.24880 -24.05145 -23.02310 -21.92193 -20.75858 -19.76998 -17.84731 -17.59952 -16.46011 -16.11030 -15.64206 -15.37912 -14.83297 -14.72376 -14.17388 -14.09289 -13.90843 -13.48760 -13.09804 -12.76130 -12.47585 -12.35579 -12.30479 -12.17232 -12.07244 -11.45307 -11.27292 -11.13942 -11.06868 -10.57994 -10.51517 -10.23190 -10.13096 -9.28117 -8.94953 -8.62670 -8.35900 -8.26428 -7.60256 -6.97011 -3.47432 1.34369 1.79446 2.57195 3.25102 3.36926 3.42113 3.51855 3.87527 4.08156 4.52198 4.80130 4.91991 4.97881 5.12584 5.22031 5.38956 5.46689 5.60191 5.66510 5.67956 5.86955 5.95415 5.98284 6.16387 6.18706 6.32261 6.52856 6.63363 6.68831 6.74189 6.95046 7.18739 7.33643 7.78743 8.20076 8.43524 8.52788 9.06647 9.33534 9.94856 10.24246 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.008061 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.491549 B = 3472.585407 C = 4979.029309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.175 4.175 3 C -0.079 4.079 4 C -0.139 4.139 5 C 0.118 3.882 6 C 0.399 3.601 7 O -0.591 6.591 8 N -0.363 5.363 9 C -0.452 4.452 10 H 0.111 0.889 11 C 0.207 3.793 12 N -0.689 5.689 13 Si 0.856 3.144 14 H -0.263 1.263 15 H -0.290 1.290 16 H -0.278 1.278 17 C 0.106 3.894 18 C -0.112 4.112 19 C 0.489 3.511 20 O -0.518 6.518 21 O -0.524 6.524 22 N -0.481 5.481 23 C 0.097 3.903 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.284 0.716 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.401 0.599 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 -4.033 -4.059 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.178 4.178 3 C -0.105 4.105 4 C -0.161 4.161 5 C -0.018 4.018 6 C 0.197 3.803 7 O -0.482 6.482 8 N -0.074 5.074 9 C -0.571 4.571 10 H 0.128 0.872 11 C -0.030 4.030 12 N -0.309 5.309 13 Si 0.678 3.322 14 H -0.188 1.188 15 H -0.217 1.217 16 H -0.204 1.204 17 C -0.019 4.019 18 C -0.151 4.151 19 C 0.332 3.668 20 O -0.406 6.406 21 O -0.335 6.335 22 N -0.194 5.194 23 C -0.062 4.062 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.259 0.741 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.177 -4.040 -3.596 11.525 hybrid contribution -0.612 0.621 -0.698 1.117 sum -10.789 -3.419 -4.293 12.105 Atomic orbital electron populations 1.20591 0.91170 1.02261 1.01688 1.20724 0.96724 0.94407 1.05981 1.21283 0.93852 0.97567 0.97755 1.21887 0.94091 0.99344 1.00729 1.21616 0.95487 0.88672 0.96005 1.16930 0.84467 0.84119 0.94755 1.90467 1.62993 1.33168 1.61574 1.43732 1.05846 1.04266 1.53542 1.18821 0.80116 0.94891 1.63239 0.87189 1.24981 0.89660 0.92552 0.95757 1.70603 1.19621 1.09347 1.31334 0.87358 0.78192 0.77621 0.89074 1.18810 1.21653 1.20385 1.21933 0.98906 0.87172 0.93907 1.21661 0.99572 0.91546 1.02327 1.23652 0.76821 0.85676 0.80668 1.90675 1.53975 1.63938 1.31975 1.84599 1.68508 1.43025 1.37388 1.68157 1.07209 1.29716 1.14328 1.22610 0.90568 0.96814 0.96212 0.91800 0.91855 0.92043 0.85742 0.84566 0.90409 0.91435 0.85786 0.87783 0.88117 0.74108 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.03 36.01 0.36 -0.69 16 2 C -0.18 -2.57 5.91 -104.35 -0.62 -3.19 16 3 C -0.08 -1.25 9.85 -39.31 -0.39 -1.64 16 4 C -0.14 -2.74 9.63 -39.04 -0.38 -3.11 16 5 C 0.12 2.60 6.55 -83.01 -0.54 2.06 16 6 C 0.40 10.36 7.51 -12.26 -0.09 10.26 16 7 O -0.59 -16.97 12.36 5.31 0.07 -16.90 16 8 N -0.36 -9.06 2.63 -115.83 -0.31 -9.37 16 9 C -0.45 -11.94 9.48 -15.01 -0.14 -12.09 16 10 H 0.11 2.80 8.01 -52.49 -0.42 2.38 16 11 C 0.21 5.52 3.00 -17.45 -0.05 5.47 16 12 N -0.69 -18.70 13.52 55.50 0.75 -17.95 16 13 Si 0.86 20.85 28.28 -169.99 -4.81 16.04 16 14 H -0.26 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 17 C 0.11 2.21 4.25 -4.04 -0.02 2.19 16 18 C -0.11 -2.01 5.53 -27.88 -0.15 -2.16 16 19 C 0.49 7.81 8.33 36.01 0.30 8.11 16 20 O -0.52 -9.36 16.74 -18.75 -0.31 -9.68 16 21 O -0.52 -6.61 13.42 -39.24 -0.53 -7.13 16 22 N -0.48 -9.35 4.54 -9.81 -0.04 -9.39 16 23 C 0.10 1.57 10.86 -17.57 -0.19 1.38 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.14 2.75 7.66 -52.48 -0.40 2.35 16 29 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 31 H 0.13 2.65 5.02 -55.77 -0.28 2.37 16 32 H 0.10 1.93 7.00 -51.93 -0.36 1.57 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 34 H 0.40 3.11 9.10 45.56 0.41 3.53 16 35 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -32.07 305.34 -5.62 -37.69 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.13 Total: 5.51 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.91 Total: 6.58 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.40 Total: -36.71 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.78 Total: -33.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.81 Total: 16.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.07 -5.62 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600331204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.792 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds