Wall clock time and date at job start Tue Mar 31 2020 01:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38673 * 120.31376 * 2 1 4 4 C 1.38538 * 118.49525 * 180.02562 * 3 2 1 5 5 C 1.39402 * 119.05697 * 0.02562 * 4 3 2 6 6 C 1.48008 * 119.73543 * 180.02562 * 5 4 3 7 7 O 1.21566 * 119.99650 * 353.40463 * 6 5 4 8 8 N 1.34769 * 120.00145 * 173.40716 * 6 5 4 9 9 C 1.36789 * 120.00024 * 185.22305 * 8 6 5 10 10 H 1.07995 * 120.00160 * 180.24271 * 9 8 6 11 11 C 1.39115 * 119.99794 * 0.24605 * 9 8 6 12 12 N 1.31316 * 120.00257 * 85.58096 * 11 9 8 13 13 Si 1.86802 * 119.99956 * 265.58193 * 11 9 8 14 14 H 1.48508 * 109.46914 * 64.97848 * 13 11 9 15 15 H 1.48499 * 109.47193 * 184.97580 * 13 11 9 16 16 H 1.48493 * 109.47027 * 304.98222 * 13 11 9 17 17 C 1.46494 * 120.00243 * 5.22451 * 8 6 5 18 18 C 1.53006 * 109.47184 * 82.98753 * 17 8 6 19 19 C 1.50701 * 109.47001 * 179.97438 * 18 17 8 20 20 O 1.20823 * 119.99977 * 359.97438 * 19 18 17 21 21 O 1.34225 * 119.99916 * 179.97438 * 19 18 17 22 22 N 1.32792 * 120.53833 * 359.97328 * 5 4 3 23 23 C 1.31534 * 121.62751 * 0.04786 * 22 5 4 24 24 H 1.09006 * 109.47145 * 89.99822 * 1 2 3 25 25 H 1.08998 * 109.46691 * 209.99650 * 1 2 3 26 26 H 1.08996 * 109.47132 * 329.99822 * 1 2 3 27 27 H 1.07998 * 120.75191 * 0.02562 * 3 2 1 28 28 H 1.08008 * 120.47024 * 179.72875 * 4 3 2 29 29 H 0.96999 * 120.00599 * 184.91576 * 12 11 9 30 30 H 1.09000 * 109.47060 * 202.98495 * 17 8 6 31 31 H 1.09004 * 109.47173 * 322.98556 * 17 8 6 32 32 H 1.08992 * 109.47104 * 300.00098 * 18 17 8 33 33 H 1.09000 * 109.46786 * 60.00026 * 18 17 8 34 34 H 0.96702 * 117.00191 * 180.02562 * 21 19 18 35 35 H 1.07993 * 119.54017 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1971 0.0000 4 6 3.5917 1.1532 -0.0005 5 6 4.2297 -0.0863 -0.0016 6 6 5.7084 -0.1507 -0.0016 7 8 6.3611 0.8677 -0.1216 8 7 6.3311 -1.3385 0.1313 9 6 7.6939 -1.3881 0.2387 10 1 8.1932 -2.3401 0.3414 11 6 8.4366 -0.2120 0.2158 12 7 8.6272 0.4659 1.3242 13 14 9.1627 0.4030 -1.3917 14 1 8.0650 0.7641 -2.3245 15 1 10.0032 1.5989 -1.1298 16 1 9.9968 -0.6651 -1.9987 17 6 5.5486 -2.5766 0.1608 18 6 5.2364 -3.0169 -1.2709 19 6 4.4319 -4.2909 -1.2405 20 8 4.1389 -4.7952 -0.1824 21 8 4.0411 -4.8653 -2.3889 22 7 3.5216 -1.2097 -0.0016 23 6 2.2063 -1.1960 -0.0015 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6845 2.1423 0.0004 28 1 4.1686 2.0662 -0.0050 29 1 9.0834 1.3215 1.2972 30 1 6.1207 -3.3561 0.6641 31 1 4.6167 -2.4047 0.6995 32 1 4.6644 -2.2375 -1.7741 33 1 6.1683 -3.1888 -1.8094 34 1 3.5267 -5.6812 -2.3189 35 1 1.6642 -2.1299 -0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600331204.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:11 Heat of formation + Delta-G solvation = -73.221186 kcal Electronic energy + Delta-G solvation = -22032.492786 eV Core-core repulsion = 18610.440330 eV Total energy + Delta-G solvation = -3422.052456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62370 -40.99692 -39.61974 -37.13590 -36.35380 -35.11832 -34.14758 -32.67015 -31.90805 -28.87512 -26.91559 -25.61994 -24.44135 -23.39273 -22.16985 -21.41849 -19.42368 -19.08569 -17.93399 -17.58406 -16.98595 -16.94145 -16.76300 -16.07356 -15.79040 -15.71031 -15.53195 -14.84622 -14.59914 -14.16051 -14.12289 -13.96957 -13.71409 -13.42773 -13.18736 -13.13663 -12.94998 -12.54687 -12.47178 -12.43173 -12.15762 -11.93611 -11.56249 -10.90784 -10.68280 -10.40281 -10.04881 -9.73871 -9.53236 -8.95762 -5.48825 -0.09202 0.39867 1.29368 1.32469 1.46257 1.52808 2.00209 2.17070 2.30735 2.65210 3.07028 3.21617 3.50305 3.97590 4.00783 4.06916 4.11869 4.15583 4.19406 4.50877 4.59851 4.75411 4.80890 4.90521 4.92678 4.95927 5.18829 5.21588 5.25717 5.37708 5.41722 5.66909 5.81324 5.96635 6.60284 6.94604 7.09736 7.20574 7.47063 8.00481 8.31382 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.008061 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.491549 B = 3472.585407 C = 4979.029309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.139 4.139 3 C -0.074 4.074 4 C -0.149 4.149 5 C 0.087 3.913 6 C 0.392 3.608 7 O -0.628 6.628 8 N -0.376 5.376 9 C -0.514 4.514 10 H 0.104 0.896 11 C 0.195 3.805 12 N -0.721 5.721 13 Si 0.892 3.108 14 H -0.294 1.294 15 H -0.283 1.283 16 H -0.258 1.258 17 C 0.111 3.889 18 C -0.106 4.106 19 C 0.506 3.494 20 O -0.540 6.540 21 O -0.511 6.511 22 N -0.482 5.482 23 C 0.085 3.915 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.165 0.835 28 H 0.121 0.879 29 H 0.287 0.713 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.427 0.573 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.412 -4.465 -5.006 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.141 4.141 3 C -0.099 4.099 4 C -0.170 4.170 5 C -0.048 4.048 6 C 0.189 3.811 7 O -0.521 6.521 8 N -0.087 5.087 9 C -0.631 4.631 10 H 0.121 0.879 11 C -0.039 4.039 12 N -0.343 5.343 13 Si 0.714 3.286 14 H -0.221 1.221 15 H -0.209 1.209 16 H -0.183 1.183 17 C -0.013 4.013 18 C -0.144 4.144 19 C 0.349 3.651 20 O -0.430 6.430 21 O -0.325 6.325 22 N -0.195 5.195 23 C -0.075 4.075 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.182 0.818 28 H 0.139 0.861 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.289 0.711 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.370 -4.533 -4.558 15.743 hybrid contribution 0.136 0.804 -0.437 0.925 sum -14.234 -3.730 -4.994 15.539 Atomic orbital electron populations 1.20756 0.87119 1.04274 1.03609 1.21349 0.99417 0.93082 1.00287 1.21718 0.92009 1.00021 0.96135 1.21964 0.96139 0.97904 1.01003 1.21202 0.93798 0.90471 0.99329 1.17688 0.86333 0.83842 0.93246 1.90401 1.64679 1.34639 1.62393 1.43710 1.05595 1.05135 1.54306 1.18704 0.81233 0.94540 1.68583 0.87877 1.25436 0.89195 0.92570 0.96684 1.70647 1.21031 1.10042 1.32561 0.86764 0.76960 0.78018 0.86863 1.22096 1.20882 1.18296 1.21923 0.97938 0.85620 0.95798 1.21407 1.00112 0.92752 1.00155 1.22987 0.76237 0.84909 0.80995 1.90677 1.54894 1.64460 1.32957 1.84516 1.68475 1.44305 1.35230 1.68020 1.09036 1.28837 1.13593 1.23272 0.89415 0.99129 0.95636 0.89635 0.89966 0.90111 0.81768 0.86063 0.90111 0.92362 0.86020 0.88349 0.88041 0.71113 0.80639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.03 71.24 0.71 -0.71 16 2 C -0.14 -3.34 5.91 -19.69 -0.12 -3.46 16 3 C -0.07 -2.02 9.85 22.45 0.22 -1.80 16 4 C -0.15 -5.71 9.63 22.62 0.22 -5.49 16 5 C 0.09 3.87 6.55 41.87 0.27 4.14 16 6 C 0.39 21.23 7.51 86.84 0.65 21.88 16 7 O -0.63 -37.92 12.36 -3.92 -0.05 -37.97 16 8 N -0.38 -19.75 2.63 -638.66 -1.68 -21.43 16 9 C -0.51 -28.89 9.48 84.13 0.80 -28.09 16 10 H 0.10 5.68 8.01 -2.91 -0.02 5.66 16 11 C 0.20 11.01 3.00 84.98 0.25 11.27 16 12 N -0.72 -41.30 13.52 21.69 0.29 -41.01 16 13 Si 0.89 44.69 28.28 68.60 1.94 46.63 16 14 H -0.29 -16.08 7.11 99.48 0.71 -15.37 16 15 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 17 C 0.11 4.80 4.25 86.38 0.37 5.16 16 18 C -0.11 -3.79 5.53 29.85 0.17 -3.62 16 19 C 0.51 15.33 8.33 71.24 0.59 15.92 16 20 O -0.54 -18.72 16.74 21.97 0.37 -18.35 16 21 O -0.51 -11.40 13.42 -51.37 -0.69 -12.09 16 22 N -0.48 -18.08 4.54 -184.95 -0.84 -18.92 16 23 C 0.08 2.40 10.86 84.81 0.92 3.32 16 24 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 26 H 0.08 0.94 8.09 -2.39 -0.02 0.93 16 27 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 28 H 0.12 4.98 7.66 -2.91 -0.02 4.96 16 29 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.06 2.55 7.91 -2.39 -0.02 2.53 16 31 H 0.12 5.26 5.02 -9.98 -0.05 5.21 16 32 H 0.10 3.64 7.00 -2.39 -0.02 3.62 16 33 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.43 5.05 9.10 -74.06 -0.67 4.38 16 35 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -74.57 305.34 4.82 -69.75 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.42 Total: 14.87 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 5.06 Total: 18.52 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.23 Total: -81.36 kcal Atomic # 8 Polarization: -68.04 SS G_CDS: -0.37 Total: -68.41 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.94 Total: 46.63 kcal Total: -74.57 4.82 -69.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600331204.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.471 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds