Wall clock time and date at job start Tue Mar 31 2020 01:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38587 * 120.32052 * 2 1 4 4 N 1.31501 * 120.91524 * 179.97438 * 3 2 1 5 5 C 1.32817 * 121.62898 * 0.02562 * 4 3 2 6 6 C 1.47998 * 119.73416 * 180.02562 * 5 4 3 7 7 O 1.21569 * 120.00033 * 255.64157 * 6 5 4 8 8 N 1.34776 * 119.99918 * 75.63548 * 6 5 4 9 9 C 1.36776 * 119.99919 * 5.28395 * 8 6 5 10 10 H 1.08002 * 120.00367 * 21.39021 * 9 8 6 11 11 C 1.39111 * 120.00337 * 201.38722 * 9 8 6 12 12 N 1.31322 * 119.99472 * 9.12635 * 11 9 8 13 13 Si 1.86793 * 120.00289 * 189.12431 * 11 9 8 14 14 H 1.48502 * 109.46992 * 60.00202 * 13 11 9 15 15 H 1.48503 * 109.47023 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47424 * 300.00017 * 13 11 9 17 17 C 1.46497 * 119.99927 * 185.27817 * 8 6 5 18 18 C 1.50701 * 109.46719 * 84.08529 * 17 8 6 19 19 O 1.20825 * 120.00179 * 359.97438 * 18 17 8 20 20 O 1.34231 * 119.99859 * 180.02562 * 18 17 8 21 21 C 1.39382 * 120.53492 * 0.02562 * 5 4 3 22 22 C 1.50697 * 120.46719 * 179.97438 * 21 5 4 23 23 C 1.38581 * 119.05377 * 0.24599 * 21 5 4 24 24 H 1.09002 * 109.47262 * 89.99466 * 1 2 3 25 25 H 1.09002 * 109.47508 * 209.99675 * 1 2 3 26 26 H 1.08998 * 109.47251 * 330.00184 * 1 2 3 27 27 H 1.08007 * 119.53951 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00000 * 179.97438 * 12 11 9 29 29 H 1.08999 * 109.47167 * 204.07666 * 17 8 6 30 30 H 1.08997 * 109.47554 * 324.08669 * 17 8 6 31 31 H 0.96701 * 116.99872 * 179.97438 * 20 18 17 32 32 H 1.09005 * 109.47484 * 84.51543 * 22 21 5 33 33 H 1.09003 * 109.47447 * 324.50787 * 22 21 5 34 34 H 1.09003 * 109.46590 * 204.50841 * 22 21 5 35 35 H 1.08001 * 120.74637 * 179.73131 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.1963 0.0000 4 7 3.5216 1.2100 0.0005 5 6 4.2298 0.0864 0.0005 6 6 5.7084 0.1506 0.0017 7 8 6.3277 -0.0833 -1.0179 8 7 6.3681 0.4687 1.1330 9 6 5.6802 0.6260 2.3047 10 1 4.7050 0.1772 2.4228 11 6 6.2366 1.3641 3.3443 12 7 7.3339 2.0570 3.1436 13 14 5.4228 1.3697 5.0257 14 1 5.3734 -0.0164 5.5563 15 1 6.2056 2.2271 5.9516 16 1 4.0422 1.9034 4.9057 17 6 7.8222 0.6458 1.1079 18 6 8.1496 2.0502 0.6702 19 8 7.2597 2.8236 0.4060 20 8 9.4299 2.4415 0.5730 21 6 3.5918 -1.1529 -0.0005 22 6 4.3968 -2.4268 -0.0011 23 6 2.2067 -1.1967 -0.0068 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6643 2.1304 0.0004 28 1 7.7217 2.5720 3.8684 29 1 8.2266 0.4725 2.1051 30 1 8.2627 -0.0647 0.4085 31 1 9.5903 3.3515 0.2879 32 1 4.6736 -2.6822 1.0218 33 1 5.2985 -2.2866 -0.5973 34 1 3.8005 -3.2331 -0.4282 35 1 1.6842 -2.1419 -0.0121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600616678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:37 Heat of formation + Delta-G solvation = -83.861275 kcal Electronic energy + Delta-G solvation = -22211.687215 eV Core-core repulsion = 18789.173370 eV Total energy + Delta-G solvation = -3422.513845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.14522 -39.05917 -37.77757 -35.18779 -34.49798 -33.20983 -33.14631 -31.58402 -28.48118 -27.15445 -26.77207 -24.79594 -23.08154 -21.46684 -20.58596 -19.43087 -17.92614 -16.91875 -16.42989 -16.27900 -15.41229 -15.13487 -14.48927 -14.34110 -14.22543 -13.94151 -13.80945 -13.11761 -12.95619 -12.79088 -12.59585 -12.35148 -12.09313 -12.01798 -11.75142 -11.57206 -11.40419 -11.21013 -10.96110 -10.66947 -10.51779 -10.19883 -9.59229 -9.22736 -9.17960 -9.04269 -8.60753 -8.20588 -7.99884 -6.51213 -4.06331 1.43050 1.72668 3.06774 3.15377 3.17340 3.43369 3.75398 3.99525 4.19530 4.29811 4.54492 4.87913 4.98201 5.06748 5.20947 5.34957 5.44975 5.59885 5.63473 5.71489 5.91186 6.01282 6.06313 6.17431 6.32279 6.44766 6.52613 6.60947 6.64940 6.74315 7.10694 7.28815 7.50294 7.69125 8.19845 8.52553 8.91785 9.19818 9.29622 9.64598 10.55389 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.007618 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.340987 B = 3674.718556 C = 4496.943545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.146 4.146 3 C 0.091 3.909 4 N -0.435 5.435 5 C 0.143 3.857 6 C 0.525 3.475 7 O -0.591 6.591 8 N -0.410 5.410 9 C -0.319 4.319 10 H 0.096 0.904 11 C 0.040 3.960 12 N -0.877 5.877 13 Si 0.931 3.069 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.273 1.273 17 C 0.157 3.843 18 C 0.499 3.501 19 O -0.507 6.507 20 O -0.535 6.535 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.085 4.085 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.151 0.849 28 H 0.275 0.725 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.390 0.610 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 -5.569 -1.042 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.148 4.148 3 C -0.068 4.068 4 N -0.144 5.144 5 C 0.003 3.997 6 C 0.312 3.688 7 O -0.476 6.476 8 N -0.127 5.127 9 C -0.447 4.447 10 H 0.114 0.886 11 C -0.164 4.164 12 N -0.516 5.516 13 Si 0.758 3.242 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.198 1.198 17 C 0.032 3.968 18 C 0.339 3.661 19 O -0.392 6.392 20 O -0.346 6.346 21 C -0.112 4.112 22 C -0.171 4.171 23 C -0.111 4.111 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.169 0.831 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.099 0.901 31 H 0.246 0.754 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.990 -4.937 -1.335 7.876 hybrid contribution -0.859 0.262 0.880 1.258 sum -6.849 -4.674 -0.455 8.305 Atomic orbital electron populations 1.20656 0.90639 1.02725 1.02084 1.20960 0.97125 0.94335 1.02370 1.22663 0.89839 0.97137 0.97181 1.67755 1.07485 1.30149 1.08985 1.20925 0.95027 0.88303 0.95465 1.17622 0.85326 0.82671 0.83185 1.90650 1.67825 1.56549 1.32615 1.43145 1.04473 1.57755 1.07351 1.19454 1.03377 1.32353 0.89526 0.88649 1.25268 0.96471 0.94073 1.00588 1.69615 1.20572 1.28029 1.33403 0.85911 0.79245 0.78368 0.80704 1.19691 1.20653 1.19779 1.20489 0.83012 0.89360 1.03979 1.23567 0.78974 0.91742 0.71794 1.90604 1.47872 1.54636 1.46079 1.84511 1.31763 1.35905 1.82424 1.20842 0.94279 0.96091 1.00028 1.20780 1.00133 0.93117 1.03064 1.21185 0.92924 0.97887 0.99071 0.91327 0.91694 0.91391 0.83141 0.91430 0.85038 0.90085 0.75406 0.90613 0.90178 0.91740 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.03 36.00 0.36 -0.72 16 2 C -0.15 -2.20 5.91 -104.35 -0.62 -2.82 16 3 C 0.09 1.65 10.86 -17.56 -0.19 1.46 16 4 N -0.44 -10.10 10.30 -9.81 -0.10 -10.20 16 5 C 0.14 3.31 4.76 -83.01 -0.40 2.91 16 6 C 0.52 13.58 5.87 -12.26 -0.07 13.51 16 7 O -0.59 -16.22 16.11 5.31 0.09 -16.13 16 8 N -0.41 -10.65 2.17 -117.13 -0.25 -10.90 16 9 C -0.32 -8.29 9.09 -15.02 -0.14 -8.43 16 10 H 0.10 2.44 6.94 -52.49 -0.36 2.08 16 11 C 0.04 1.02 5.14 -17.45 -0.09 0.93 16 12 N -0.88 -22.83 8.77 55.50 0.49 -22.34 16 13 Si 0.93 19.89 29.56 -169.99 -5.03 14.86 16 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 C 0.16 3.81 5.18 -5.19 -0.03 3.78 16 18 C 0.50 12.49 6.41 36.01 0.23 12.72 16 19 O -0.51 -14.60 16.79 -18.75 -0.31 -14.92 16 20 O -0.54 -10.97 13.42 -39.26 -0.53 -11.50 16 21 C -0.11 -2.07 5.93 -104.07 -0.62 -2.69 16 22 C -0.11 -1.84 9.54 36.00 0.34 -1.50 16 23 C -0.08 -1.32 9.51 -39.31 -0.37 -1.69 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.15 2.27 8.06 -52.48 -0.42 1.84 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 29 H 0.13 3.14 6.32 -51.93 -0.33 2.81 16 30 H 0.08 1.82 7.53 -51.93 -0.39 1.43 16 31 H 0.39 6.27 9.10 45.56 0.41 6.68 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.46 6.83 -51.93 -0.35 1.10 16 34 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 35 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -34.21 308.38 -5.69 -39.91 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -3.11 Total: 9.09 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: -1.58 Total: 17.48 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.13 Total: -43.44 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.76 Total: -42.55 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.21 -5.69 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600616678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.955 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds