Wall clock time and date at job start Tue Mar 31 2020 01:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38587 * 120.32052 * 2 1 4 4 N 1.31501 * 120.91524 * 179.97438 * 3 2 1 5 5 C 1.32817 * 121.62898 * 0.02562 * 4 3 2 6 6 C 1.47998 * 119.73416 * 180.02562 * 5 4 3 7 7 O 1.21569 * 120.00033 * 255.64157 * 6 5 4 8 8 N 1.34776 * 119.99918 * 75.63548 * 6 5 4 9 9 C 1.36776 * 119.99919 * 5.28395 * 8 6 5 10 10 H 1.08002 * 120.00367 * 21.39021 * 9 8 6 11 11 C 1.39111 * 120.00337 * 201.38722 * 9 8 6 12 12 N 1.31322 * 119.99472 * 9.12635 * 11 9 8 13 13 Si 1.86793 * 120.00289 * 189.12431 * 11 9 8 14 14 H 1.48502 * 109.46992 * 60.00202 * 13 11 9 15 15 H 1.48503 * 109.47023 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47424 * 300.00017 * 13 11 9 17 17 C 1.46497 * 119.99927 * 185.27817 * 8 6 5 18 18 C 1.50701 * 109.46719 * 84.08529 * 17 8 6 19 19 O 1.20825 * 120.00179 * 359.97438 * 18 17 8 20 20 O 1.34231 * 119.99859 * 180.02562 * 18 17 8 21 21 C 1.39382 * 120.53492 * 0.02562 * 5 4 3 22 22 C 1.50697 * 120.46719 * 179.97438 * 21 5 4 23 23 C 1.38581 * 119.05377 * 0.24599 * 21 5 4 24 24 H 1.09002 * 109.47262 * 89.99466 * 1 2 3 25 25 H 1.09002 * 109.47508 * 209.99675 * 1 2 3 26 26 H 1.08998 * 109.47251 * 330.00184 * 1 2 3 27 27 H 1.08007 * 119.53951 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00000 * 179.97438 * 12 11 9 29 29 H 1.08999 * 109.47167 * 204.07666 * 17 8 6 30 30 H 1.08997 * 109.47554 * 324.08669 * 17 8 6 31 31 H 0.96701 * 116.99872 * 179.97438 * 20 18 17 32 32 H 1.09005 * 109.47484 * 84.51543 * 22 21 5 33 33 H 1.09003 * 109.47447 * 324.50787 * 22 21 5 34 34 H 1.09003 * 109.46590 * 204.50841 * 22 21 5 35 35 H 1.08001 * 120.74637 * 179.73131 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.1963 0.0000 4 7 3.5216 1.2100 0.0005 5 6 4.2298 0.0864 0.0005 6 6 5.7084 0.1506 0.0017 7 8 6.3277 -0.0833 -1.0179 8 7 6.3681 0.4687 1.1330 9 6 5.6802 0.6260 2.3047 10 1 4.7050 0.1772 2.4228 11 6 6.2366 1.3641 3.3443 12 7 7.3339 2.0570 3.1436 13 14 5.4228 1.3697 5.0257 14 1 5.3734 -0.0164 5.5563 15 1 6.2056 2.2271 5.9516 16 1 4.0422 1.9034 4.9057 17 6 7.8222 0.6458 1.1079 18 6 8.1496 2.0502 0.6702 19 8 7.2597 2.8236 0.4060 20 8 9.4299 2.4415 0.5730 21 6 3.5918 -1.1529 -0.0005 22 6 4.3968 -2.4268 -0.0011 23 6 2.2067 -1.1967 -0.0068 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6643 2.1304 0.0004 28 1 7.7217 2.5720 3.8684 29 1 8.2266 0.4725 2.1051 30 1 8.2627 -0.0647 0.4085 31 1 9.5903 3.3515 0.2879 32 1 4.6736 -2.6822 1.0218 33 1 5.2985 -2.2866 -0.5973 34 1 3.8005 -3.2331 -0.4282 35 1 1.6842 -2.1419 -0.0121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600616678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:35 Heat of formation + Delta-G solvation = -108.229594 kcal Electronic energy + Delta-G solvation = -22212.743904 eV Core-core repulsion = 18789.173370 eV Total energy + Delta-G solvation = -3423.570534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73398 -40.88298 -39.61118 -37.09961 -36.47139 -34.54705 -34.46571 -33.53113 -30.24612 -28.31480 -28.28647 -26.67305 -24.53972 -23.09752 -22.13214 -21.24433 -19.66452 -18.85224 -18.20508 -17.89273 -17.27227 -16.85455 -16.33691 -16.22075 -15.65499 -15.30623 -15.21297 -14.92498 -14.46801 -14.04178 -13.92701 -13.70991 -13.51460 -13.30894 -13.25764 -13.19819 -13.16621 -12.75517 -12.59250 -12.42895 -12.21571 -12.14291 -11.57750 -11.04021 -10.98358 -10.48263 -10.19444 -9.96286 -9.59528 -8.43236 -6.04786 0.03271 0.40527 1.33857 1.40532 1.51732 1.62915 1.78257 2.20514 2.48482 2.69592 2.89198 3.05242 3.67496 3.84060 3.90255 4.05488 4.14301 4.33449 4.40307 4.59612 4.67793 4.73808 4.75855 4.85429 4.91245 4.93312 5.13770 5.25641 5.26937 5.32767 5.33658 5.59704 5.83631 5.90460 6.24991 6.95548 7.09442 7.28476 7.39980 7.72039 8.63046 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.007618 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.340987 B = 3674.718556 C = 4496.943545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.124 4.124 3 C 0.071 3.929 4 N -0.488 5.488 5 C 0.093 3.907 6 C 0.516 3.484 7 O -0.625 6.625 8 N -0.420 5.420 9 C -0.333 4.333 10 H 0.093 0.907 11 C -0.002 4.002 12 N -0.899 5.899 13 Si 0.997 3.003 14 H -0.254 1.254 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.152 3.848 18 C 0.503 3.497 19 O -0.552 6.552 20 O -0.519 6.519 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.079 4.079 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.172 0.828 28 H 0.275 0.725 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.412 0.588 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 -6.937 -0.087 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.126 4.126 3 C -0.089 4.089 4 N -0.198 5.198 5 C -0.045 4.045 6 C 0.305 3.695 7 O -0.512 6.512 8 N -0.136 5.136 9 C -0.460 4.460 10 H 0.110 0.890 11 C -0.203 4.203 12 N -0.538 5.538 13 Si 0.820 3.180 14 H -0.179 1.179 15 H -0.203 1.203 16 H -0.204 1.204 17 C 0.027 3.973 18 C 0.345 3.655 19 O -0.441 6.441 20 O -0.331 6.331 21 C -0.118 4.118 22 C -0.166 4.166 23 C -0.104 4.104 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.189 0.811 28 H 0.086 0.914 29 H 0.151 0.849 30 H 0.109 0.891 31 H 0.271 0.729 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.543 -6.314 -0.379 10.630 hybrid contribution -0.084 0.730 0.512 0.895 sum -8.627 -5.584 0.133 10.278 Atomic orbital electron populations 1.20785 0.86588 1.04545 1.03832 1.21486 0.99736 0.92949 0.98437 1.23172 0.88562 0.99636 0.97501 1.67552 1.10067 1.31272 1.10904 1.20665 0.93505 0.90264 1.00081 1.18234 0.87061 0.81655 0.82577 1.90577 1.69185 1.57917 1.33545 1.43348 1.04956 1.57637 1.07677 1.19601 1.03589 1.33034 0.89812 0.88962 1.26145 0.97000 0.93381 1.03793 1.69709 1.21537 1.28357 1.34202 0.84928 0.77676 0.79108 0.76278 1.17860 1.20273 1.20367 1.20584 0.83019 0.89476 1.04221 1.23674 0.79503 0.91653 0.70632 1.90580 1.49415 1.55839 1.48278 1.84439 1.29206 1.37721 1.81759 1.21151 0.96173 0.95187 0.99304 1.20792 0.99407 0.93413 1.03011 1.21716 0.91423 1.00085 0.97190 0.89335 0.89299 0.90236 0.81062 0.91428 0.84885 0.89079 0.72897 0.90341 0.93113 0.87563 0.80391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 10.03 71.24 0.71 -0.88 16 2 C -0.12 -3.36 5.91 -19.69 -0.12 -3.47 16 3 C 0.07 2.50 10.86 84.83 0.92 3.42 16 4 N -0.49 -23.26 10.30 -184.94 -1.90 -25.17 16 5 C 0.09 4.44 4.76 41.86 0.20 4.64 16 6 C 0.52 27.97 5.87 86.83 0.51 28.48 16 7 O -0.62 -36.15 16.11 -3.93 -0.06 -36.21 16 8 N -0.42 -22.65 2.17 -642.75 -1.39 -24.04 16 9 C -0.33 -17.73 9.09 84.13 0.76 -16.96 16 10 H 0.09 4.85 6.94 -2.91 -0.02 4.83 16 11 C 0.00 -0.09 5.14 84.98 0.44 0.34 16 12 N -0.90 -47.48 8.77 21.69 0.19 -47.29 16 13 Si 1.00 40.63 29.56 68.60 2.03 42.65 16 14 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 15 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 17 C 0.15 7.66 5.18 85.63 0.44 8.11 16 18 C 0.50 25.91 6.41 71.24 0.46 26.37 16 19 O -0.55 -33.02 16.79 21.97 0.37 -32.65 16 20 O -0.52 -21.33 13.42 -51.43 -0.69 -22.02 16 21 C -0.12 -4.26 5.93 -19.51 -0.12 -4.38 16 22 C -0.11 -3.44 9.54 71.24 0.68 -2.76 16 23 C -0.08 -2.17 9.51 22.44 0.21 -1.96 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.09 1.07 8.10 -2.39 -0.02 1.05 16 26 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 27 H 0.17 4.99 8.06 -2.91 -0.02 4.96 16 28 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.13 6.56 6.32 -2.39 -0.02 6.55 16 30 H 0.09 4.29 7.53 -2.39 -0.02 4.27 16 31 H 0.41 13.06 9.10 -74.06 -0.67 12.39 16 32 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.05 1.89 6.83 -2.39 -0.02 1.88 16 34 H 0.11 2.37 8.06 -2.39 -0.02 2.35 16 35 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -78.80 308.38 4.11 -74.70 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.46 Total: 29.10 kcal Atomic # 6 Polarization: 35.83 SS G_CDS: 5.11 Total: 40.94 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -3.11 Total: -96.50 kcal Atomic # 8 Polarization: -90.50 SS G_CDS: -0.38 Total: -90.88 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -78.80 4.11 -74.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600616678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.532 kcal (2) G-P(sol) polarization free energy of solvation -78.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds