Wall clock time and date at job start Tue Mar 31 2020 00:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47229 * 299.99747 * 3 2 1 6 6 H 1.48500 * 109.47049 * 59.99511 * 3 2 1 7 7 C 1.40050 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99748 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99993 * 359.97438 * 9 7 2 11 11 N 1.34781 * 119.99743 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99832 * 0.02562 * 11 9 7 13 13 C 1.53002 * 109.46810 * 269.99624 * 12 11 9 14 14 C 1.50695 * 109.46980 * 179.97438 * 13 12 11 15 15 O 1.20821 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.34228 * 119.99990 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99786 * 179.97438 * 11 9 7 18 18 C 1.50701 * 109.46992 * 90.00095 * 17 11 9 19 19 C 1.38643 * 120.79007 * 269.71785 * 18 17 11 20 20 C 1.38208 * 119.16141 * 179.80107 * 19 18 17 21 21 N 1.31868 * 120.76386 * 0.48541 * 20 19 18 22 22 C 1.31874 * 121.72670 * 359.74017 * 21 20 19 23 23 C 1.38206 * 120.76037 * 0.02562 * 22 21 20 24 24 H 0.97001 * 120.00200 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.47334 * 29.99480 * 12 11 9 26 26 H 1.08994 * 109.46680 * 150.00103 * 12 11 9 27 27 H 1.09000 * 109.47431 * 300.00525 * 13 12 11 28 28 H 1.09004 * 109.47052 * 59.99943 * 13 12 11 29 29 H 0.96699 * 117.00224 * 180.02562 * 16 14 13 30 30 H 1.09002 * 109.47391 * 330.00086 * 17 11 9 31 31 H 1.09001 * 109.46813 * 210.00142 * 17 11 9 32 32 H 1.08003 * 120.42289 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.61967 * 180.20656 * 20 19 18 34 34 H 1.07991 * 119.61819 * 180.02562 * 22 21 20 35 35 H 1.08002 * 120.41178 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2126 6 1 1.8818 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 3.4140 -3.6476 0.0011 13 6 3.9245 -3.6474 -1.4412 14 6 5.4315 -3.6467 -1.4407 15 8 6.0352 -3.6469 -0.3941 16 8 6.1030 -3.6469 -2.6029 17 6 1.2165 -4.9164 0.0011 18 6 0.9648 -5.3517 -1.4195 19 6 -0.1879 -4.9660 -2.0864 20 6 -0.3826 -5.3812 -3.3902 21 7 0.5077 -6.1425 -3.9957 22 6 1.6129 -6.5322 -3.3910 23 6 1.8778 -6.1523 -2.0888 24 1 -0.4850 0.8400 -0.0004 25 1 3.7771 -2.7578 0.5152 26 1 3.7771 -4.5377 0.5149 27 1 3.5613 -4.5372 -1.9554 28 1 3.5613 -2.7573 -1.9551 29 1 7.0687 -3.6468 -2.5520 30 1 0.2642 -4.7860 0.5153 31 1 1.8058 -5.6759 0.5149 32 1 -0.9228 -4.3460 -1.5945 33 1 -1.2763 -5.0822 -3.9177 34 1 2.3191 -7.1553 -3.9193 35 1 2.7845 -6.4750 -1.5988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:55 Heat of formation + Delta-G solvation = -93.452906 kcal Electronic energy + Delta-G solvation = -21804.007579 eV Core-core repulsion = 18381.077810 eV Total energy + Delta-G solvation = -3422.929769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16357 -39.79077 -37.89093 -36.02619 -34.69744 -32.93332 -32.49063 -30.91887 -30.31119 -27.35458 -25.48819 -24.05570 -23.09201 -21.83631 -20.84507 -19.28600 -17.99641 -16.84112 -16.50821 -16.19859 -15.87077 -15.76227 -15.44797 -15.23317 -14.61561 -14.14487 -13.76033 -13.41218 -13.33223 -12.96503 -12.80033 -12.44686 -11.96069 -11.70542 -11.59267 -11.39984 -11.27102 -11.05537 -10.89946 -10.81651 -10.43415 -10.31058 -10.19320 -9.32344 -9.22155 -8.96166 -8.80500 -7.72710 -7.55707 -6.31574 -4.77441 1.44374 1.58816 2.39800 3.06053 3.15685 3.18594 3.21271 3.97261 4.11692 4.41597 4.56267 4.72867 5.03246 5.11045 5.22044 5.37556 5.38491 5.52228 5.58566 5.70942 5.79061 5.88173 5.94427 6.15339 6.20711 6.29450 6.36274 6.47883 6.65239 6.77153 7.05140 7.34050 7.38679 7.95273 8.04938 8.18004 8.25064 8.91025 9.21768 10.42311 10.61248 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.007659 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.110794 B = 3655.166005 C = 5107.159478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.089 3.911 3 Si 0.903 3.097 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.557 3.443 10 O -0.569 6.569 11 N -0.634 5.634 12 C 0.143 3.857 13 C -0.139 4.139 14 C 0.484 3.516 15 O -0.520 6.520 16 O -0.520 6.520 17 C 0.156 3.844 18 C -0.044 4.044 19 C -0.140 4.140 20 C 0.090 3.910 21 N -0.494 5.494 22 C 0.086 3.914 23 C -0.173 4.173 24 H 0.269 0.731 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.404 0.596 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 -8.853 -3.960 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.090 0.910 9 C 0.364 3.636 10 O -0.451 6.451 11 N -0.371 5.371 12 C 0.018 3.982 13 C -0.178 4.178 14 C 0.327 3.673 15 O -0.409 6.409 16 O -0.332 6.332 17 C 0.032 3.968 18 C -0.054 4.054 19 C -0.161 4.161 20 C -0.066 4.066 21 N -0.204 5.204 22 C -0.071 4.071 23 C -0.193 4.193 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.133 0.867 29 H 0.261 0.739 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.500 -8.982 -4.507 11.456 hybrid contribution 1.448 1.136 0.711 1.973 sum 6.948 -7.846 -3.796 11.146 Atomic orbital electron populations 1.70003 1.07008 1.27376 1.34713 1.25705 0.94619 1.00298 0.92512 0.86377 0.80643 0.81857 0.78376 1.18691 1.20081 1.20007 1.21024 0.93699 0.89088 1.53996 0.90956 1.18296 0.87035 0.82001 0.76297 1.90592 1.13810 1.85855 1.54810 1.48206 1.04196 1.04946 1.79727 1.20992 0.81807 1.03326 0.92090 1.22153 0.85808 1.06529 1.03345 1.23753 0.91994 0.70931 0.80636 1.90694 1.70823 1.46143 1.33217 1.84598 1.26202 1.85806 1.36582 1.20090 0.99145 0.87215 0.90346 1.21031 0.92996 0.93025 0.98383 1.22299 0.98720 0.99229 0.95803 1.22720 0.97661 0.93803 0.92394 1.67607 1.02935 1.11750 1.38095 1.22586 0.94425 0.97841 0.92239 1.21976 1.00308 1.00560 0.96498 0.92025 0.88871 0.91915 0.88075 0.86743 0.73856 0.89278 0.91306 0.83867 0.83190 0.83465 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.62 11.83 55.55 0.66 -20.97 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.26 16 3 Si 0.90 19.50 29.56 -169.99 -5.02 14.47 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -14.24 8.74 -35.63 -0.31 -14.55 16 8 H 0.07 1.77 6.00 -52.49 -0.31 1.46 16 9 C 0.56 14.42 7.61 -12.99 -0.10 14.32 16 10 O -0.57 -16.59 14.28 5.20 0.07 -16.52 16 11 N -0.63 -12.92 2.46 -176.72 -0.43 -13.35 16 12 C 0.14 2.51 4.45 -4.04 -0.02 2.49 16 13 C -0.14 -2.20 6.13 -27.88 -0.17 -2.37 16 14 C 0.48 7.13 8.33 36.00 0.30 7.42 16 15 O -0.52 -8.83 16.74 -18.75 -0.31 -9.15 16 16 O -0.52 -6.18 13.42 -39.25 -0.53 -6.71 16 17 C 0.16 2.72 5.63 -5.19 -0.03 2.69 16 18 C -0.04 -0.73 5.42 -104.32 -0.57 -1.30 16 19 C -0.14 -2.45 9.82 -39.44 -0.39 -2.84 16 20 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 21 N -0.49 -7.91 10.36 -13.25 -0.14 -8.05 16 22 C 0.09 1.20 11.18 -17.55 -0.20 1.01 16 23 C -0.17 -2.41 7.69 -39.44 -0.30 -2.72 16 24 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 25 H 0.09 1.81 6.05 -51.93 -0.31 1.50 16 26 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 27 H 0.10 1.47 5.31 -51.93 -0.28 1.20 16 28 H 0.11 2.03 8.14 -51.93 -0.42 1.60 16 29 H 0.40 2.90 9.10 45.56 0.41 3.31 16 30 H 0.09 1.71 7.38 -51.93 -0.38 1.32 16 31 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 32 H 0.14 2.76 7.73 -52.48 -0.41 2.35 16 33 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.13 1.47 7.73 -52.49 -0.41 1.06 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -33.60 309.20 -6.02 -39.62 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -2.90 Total: 8.32 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.07 Total: 7.68 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.09 Total: -42.37 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.77 Total: -32.37 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.60 -6.02 -39.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.836 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds