Wall clock time and date at job start Tue Mar 31 2020 00:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47229 * 299.99747 * 3 2 1 6 6 H 1.48500 * 109.47049 * 59.99511 * 3 2 1 7 7 C 1.40050 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99748 * 0.02562 * 7 2 1 10 10 O 1.21688 * 119.99993 * 359.97438 * 9 7 2 11 11 N 1.34781 * 119.99743 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99832 * 0.02562 * 11 9 7 13 13 C 1.53002 * 109.46810 * 269.99624 * 12 11 9 14 14 C 1.50695 * 109.46980 * 179.97438 * 13 12 11 15 15 O 1.20821 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.34228 * 119.99990 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99786 * 179.97438 * 11 9 7 18 18 C 1.50701 * 109.46992 * 90.00095 * 17 11 9 19 19 C 1.38643 * 120.79007 * 269.71785 * 18 17 11 20 20 C 1.38208 * 119.16141 * 179.80107 * 19 18 17 21 21 N 1.31868 * 120.76386 * 0.48541 * 20 19 18 22 22 C 1.31874 * 121.72670 * 359.74017 * 21 20 19 23 23 C 1.38206 * 120.76037 * 0.02562 * 22 21 20 24 24 H 0.97001 * 120.00200 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.47334 * 29.99480 * 12 11 9 26 26 H 1.08994 * 109.46680 * 150.00103 * 12 11 9 27 27 H 1.09000 * 109.47431 * 300.00525 * 13 12 11 28 28 H 1.09004 * 109.47052 * 59.99943 * 13 12 11 29 29 H 0.96699 * 117.00224 * 180.02562 * 16 14 13 30 30 H 1.09002 * 109.47391 * 330.00086 * 17 11 9 31 31 H 1.09001 * 109.46813 * 210.00142 * 17 11 9 32 32 H 1.08003 * 120.42289 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.61967 * 180.20656 * 20 19 18 34 34 H 1.07991 * 119.61819 * 180.02562 * 22 21 20 35 35 H 1.08002 * 120.41178 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2126 6 1 1.8818 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 3.4140 -3.6476 0.0011 13 6 3.9245 -3.6474 -1.4412 14 6 5.4315 -3.6467 -1.4407 15 8 6.0352 -3.6469 -0.3941 16 8 6.1030 -3.6469 -2.6029 17 6 1.2165 -4.9164 0.0011 18 6 0.9648 -5.3517 -1.4195 19 6 -0.1879 -4.9660 -2.0864 20 6 -0.3826 -5.3812 -3.3902 21 7 0.5077 -6.1425 -3.9957 22 6 1.6129 -6.5322 -3.3910 23 6 1.8778 -6.1523 -2.0888 24 1 -0.4850 0.8400 -0.0004 25 1 3.7771 -2.7578 0.5152 26 1 3.7771 -4.5377 0.5149 27 1 3.5613 -4.5372 -1.9554 28 1 3.5613 -2.7573 -1.9551 29 1 7.0687 -3.6468 -2.5520 30 1 0.2642 -4.7860 0.5153 31 1 1.8058 -5.6759 0.5149 32 1 -0.9228 -4.3460 -1.5945 33 1 -1.2763 -5.0822 -3.9177 34 1 2.3191 -7.1553 -3.9193 35 1 2.7845 -6.4750 -1.5988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:55 Heat of formation + Delta-G solvation = -117.214110 kcal Electronic energy + Delta-G solvation = -21805.037942 eV Core-core repulsion = 18381.077810 eV Total energy + Delta-G solvation = -3423.960132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38586 -40.98959 -39.58641 -37.14882 -36.40904 -34.70226 -34.04801 -32.14823 -31.70983 -29.10649 -27.11037 -25.49588 -24.29996 -23.22602 -22.06480 -21.00272 -19.19042 -18.36723 -17.89933 -17.81274 -17.13656 -17.06396 -16.87843 -16.46234 -16.24570 -15.79210 -15.18396 -14.72552 -14.55088 -14.29944 -14.24744 -13.99125 -13.51084 -13.19333 -13.12438 -13.00742 -12.77983 -12.52392 -12.44914 -12.19229 -12.01168 -11.92366 -11.60543 -10.94966 -10.63529 -10.46461 -10.00099 -9.73114 -9.24743 -8.29364 -6.83283 0.24798 0.32332 1.24494 1.35926 1.38357 1.53324 2.06928 2.23394 2.46708 2.77521 3.13309 3.55464 3.62926 3.82116 3.86110 4.03721 4.08698 4.25461 4.29607 4.42160 4.51872 4.61473 4.71742 4.83649 4.86957 4.96171 5.04941 5.13586 5.37404 5.47630 5.64825 5.74292 5.85247 6.10666 6.33823 6.89146 7.05396 7.05592 7.35845 8.46752 8.66510 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.007659 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.110794 B = 3655.166005 C = 5107.159478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.547 3.453 10 O -0.614 6.614 11 N -0.632 5.632 12 C 0.143 3.857 13 C -0.131 4.131 14 C 0.498 3.502 15 O -0.544 6.544 16 O -0.512 6.512 17 C 0.157 3.843 18 C -0.056 4.056 19 C -0.165 4.165 20 C 0.086 3.914 21 N -0.507 5.507 22 C 0.090 3.910 23 C -0.160 4.160 24 H 0.273 0.727 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.427 0.573 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.164 0.836 34 H 0.188 0.812 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.841 -9.987 -4.921 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.600 4.600 8 H 0.103 0.897 9 C 0.353 3.647 10 O -0.499 6.499 11 N -0.367 5.367 12 C 0.019 3.981 13 C -0.170 4.170 14 C 0.341 3.659 15 O -0.435 6.435 16 O -0.326 6.326 17 C 0.033 3.967 18 C -0.065 4.065 19 C -0.186 4.186 20 C -0.069 4.069 21 N -0.217 5.217 22 C -0.067 4.067 23 C -0.180 4.180 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.110 0.890 29 H 0.289 0.711 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.181 0.819 34 H 0.205 0.795 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.593 -10.157 -5.488 14.392 hybrid contribution 0.565 1.358 0.968 1.761 sum 9.158 -8.800 -4.520 13.481 Atomic orbital electron populations 1.70156 1.09112 1.28648 1.36464 1.26782 0.95388 1.04362 0.91488 0.85211 0.79484 0.76642 0.78568 1.17455 1.19448 1.19407 1.21468 0.94491 0.89943 1.54133 0.89682 1.18488 0.86638 0.83732 0.75826 1.90559 1.15731 1.87106 1.56534 1.47905 1.05526 1.04650 1.78610 1.21057 0.79749 1.03694 0.93607 1.21907 0.87126 1.06301 1.01688 1.23268 0.91382 0.70391 0.80844 1.90702 1.71162 1.47413 1.34186 1.84524 1.28278 1.84990 1.34792 1.20205 0.98256 0.86704 0.91498 1.20974 0.93505 0.94174 0.97878 1.22166 0.99231 1.00310 0.96849 1.22871 0.98458 0.93813 0.91797 1.67694 1.03696 1.11903 1.38426 1.23275 0.94035 0.96996 0.92345 1.22254 1.00477 0.98901 0.96383 0.91707 0.91086 0.88924 0.86419 0.88971 0.71090 0.92195 0.87229 0.87163 0.81923 0.79537 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.04 11.83 21.84 0.26 -47.79 16 2 C 0.04 1.92 5.50 85.31 0.47 2.39 16 3 Si 0.98 40.39 29.56 68.60 2.03 42.41 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.56 -30.31 8.74 24.83 0.22 -30.10 16 8 H 0.09 4.20 6.00 -2.91 -0.02 4.18 16 9 C 0.55 29.35 7.61 86.36 0.66 30.01 16 10 O -0.61 -37.90 14.28 -4.31 -0.06 -37.96 16 11 N -0.63 -25.81 2.46 -831.25 -2.04 -27.85 16 12 C 0.14 4.81 4.45 86.38 0.38 5.19 16 13 C -0.13 -3.85 6.13 29.85 0.18 -3.67 16 14 C 0.50 13.12 8.33 71.23 0.59 13.72 16 15 O -0.54 -16.95 16.74 21.98 0.37 -16.58 16 16 O -0.51 -10.22 13.42 -51.40 -0.69 -10.91 16 17 C 0.16 5.41 5.63 85.63 0.48 5.89 16 18 C -0.06 -1.80 5.42 -19.67 -0.11 -1.90 16 19 C -0.16 -5.99 9.82 22.36 0.22 -5.77 16 20 C 0.09 2.77 11.18 84.68 0.95 3.72 16 21 N -0.51 -15.29 10.36 -195.84 -2.03 -17.32 16 22 C 0.09 2.20 11.18 84.68 0.95 3.15 16 23 C -0.16 -3.93 7.69 22.36 0.17 -3.76 16 24 H 0.27 14.70 8.29 -92.71 -0.77 13.93 16 25 H 0.07 2.72 6.05 -2.39 -0.01 2.70 16 26 H 0.09 2.57 7.85 -2.39 -0.02 2.55 16 27 H 0.12 3.02 5.31 -2.39 -0.01 3.01 16 28 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.43 4.38 9.10 -74.06 -0.67 3.70 16 30 H 0.06 2.41 7.38 -2.39 -0.02 2.40 16 31 H 0.11 2.84 7.85 -2.39 -0.02 2.82 16 32 H 0.11 4.69 7.73 -2.91 -0.02 4.67 16 33 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.19 3.05 8.06 -2.92 -0.02 3.02 16 35 H 0.16 2.84 7.73 -2.91 -0.02 2.82 16 Total: -1.00 -76.22 309.20 3.46 -72.75 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.47 Total: 24.37 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 5.17 Total: 18.87 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -3.81 Total: -92.96 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -0.38 Total: -65.45 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Total: -76.22 3.46 -72.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.460 kcal (2) G-P(sol) polarization free energy of solvation -76.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds