Wall clock time and date at job start Tue Mar 31 2020 00:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00454 * 2 1 4 4 H 1.48492 * 109.47069 * 240.00298 * 3 2 1 5 5 H 1.48500 * 109.46751 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46808 * 120.00093 * 3 2 1 7 7 C 1.37876 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00233 * 169.41923 * 7 2 1 9 9 C 1.50700 * 120.00142 * 349.41461 * 7 2 1 10 10 C 1.53002 * 115.54996 * 325.11102 * 9 7 2 11 11 N 1.46497 * 109.47449 * 306.42455 * 10 9 7 12 12 C 1.34779 * 120.00200 * 183.69173 * 11 10 9 13 13 O 1.21606 * 119.99654 * 5.76603 * 12 11 10 14 14 C 1.47397 * 119.99924 * 185.76418 * 12 11 10 15 15 C 1.38237 * 126.45619 * 354.86645 * 14 12 11 16 16 N 1.34239 * 108.41365 * 179.97438 * 15 14 12 17 17 H 0.97000 * 125.39773 * 180.02562 * 16 15 14 18 18 C 1.37826 * 109.21168 * 359.74390 * 16 15 14 19 19 C 1.46628 * 125.86560 * 180.27621 * 18 16 15 20 20 O 1.21602 * 120.00619 * 180.18282 * 19 18 16 21 21 O 1.34878 * 119.99823 * 0.17489 * 19 18 16 22 22 C 1.36454 * 108.27775 * 0.42634 * 18 16 15 23 23 C 1.52998 * 117.50223 * 110.78630 * 9 7 2 24 24 C 1.52999 * 117.49879 * 179.44911 * 9 7 2 25 25 H 0.97009 * 119.99697 * 5.02592 * 1 2 3 26 26 H 1.08996 * 109.47296 * 186.41758 * 10 9 7 27 27 H 1.09000 * 109.46745 * 66.42326 * 10 9 7 28 28 H 0.97006 * 120.00054 * 3.68871 * 11 10 9 29 29 H 1.07998 * 125.79492 * 359.96316 * 15 14 12 30 30 H 0.96701 * 116.99676 * 180.02562 * 21 19 18 31 31 H 1.08000 * 126.49795 * 179.83684 * 22 18 16 32 32 H 1.09000 * 117.50275 * 215.00456 * 23 9 7 33 33 H 1.08996 * 117.49576 * 0.02562 * 23 9 7 34 34 H 1.09004 * 117.50270 * 359.97049 * 24 9 7 35 35 H 1.09000 * 117.49981 * 144.97369 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0706 -1.2021 -0.1723 9 6 1.2701 -2.4882 0.2386 10 6 0.1019 -2.4117 1.2238 11 7 0.5635 -1.8244 2.4840 12 6 -0.2800 -1.7261 3.5306 13 8 -1.3901 -2.2184 3.4651 14 6 0.1430 -1.0219 4.7544 15 6 1.3981 -0.5026 5.0112 16 7 1.3830 0.0602 6.2298 17 1 2.1362 0.4987 6.6555 18 6 0.1260 -0.0782 6.7777 19 6 -0.2956 0.4096 8.0946 20 8 -1.4358 0.2252 8.4750 21 8 0.5813 1.0628 8.8842 22 6 -0.6581 -0.7502 5.8857 23 6 1.1375 -3.4537 -0.9408 24 6 2.0890 -3.7803 0.2130 25 1 -0.4850 0.8369 -0.0736 26 1 -0.2829 -3.4144 1.4096 27 1 -0.6889 -1.7914 0.8020 28 1 1.4763 -1.5062 2.5653 29 1 2.2469 -0.5430 4.3446 30 1 0.2574 1.3652 9.7437 31 1 -1.6957 -1.0193 6.0178 32 1 0.2180 -4.0343 -1.0150 33 1 1.5818 -3.1531 -1.8896 34 1 3.1589 -3.6945 0.0226 35 1 1.7957 -4.5757 0.8981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:08 Heat of formation + Delta-G solvation = -60.295706 kcal Electronic energy + Delta-G solvation = -21098.473425 eV Core-core repulsion = 17676.981460 eV Total energy + Delta-G solvation = -3421.491965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.55989 -39.78751 -38.36272 -36.57873 -36.28849 -33.04781 -32.21041 -31.31083 -29.87916 -26.25602 -25.42739 -23.88160 -22.36829 -21.21233 -20.37584 -19.58818 -19.33027 -18.48119 -17.86566 -16.46630 -15.96665 -15.87504 -15.38385 -14.85819 -14.61563 -14.47242 -13.84869 -13.61277 -13.48980 -13.40761 -12.93144 -12.47631 -12.23352 -11.82893 -11.74496 -11.48944 -11.08452 -10.98514 -10.85350 -10.53899 -10.29210 -9.67132 -9.21379 -9.10352 -9.06964 -8.84092 -8.48449 -8.26081 -7.80000 -6.09758 -4.21104 1.11616 2.05947 2.67222 2.94529 3.02332 3.15410 3.25131 3.26404 4.08459 4.23195 4.29996 4.89704 4.92799 5.00285 5.12456 5.45283 5.51062 5.93969 5.98491 6.04708 6.20436 6.31376 6.48494 6.55586 6.62190 6.66061 6.73306 6.91712 7.09101 7.15752 7.27430 7.55187 7.61705 7.66905 7.90650 8.29970 8.57864 8.79809 9.18986 9.39614 10.86455 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.004900 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.228174 B = 5712.597891 C = 6467.882912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.039 3.961 10 C 0.163 3.837 11 N -0.685 5.685 12 C 0.576 3.424 13 O -0.562 6.562 14 C -0.217 4.217 15 C 0.085 3.915 16 N -0.519 5.519 17 H 0.426 0.574 18 C -0.065 4.065 19 C 0.557 3.443 20 O -0.507 6.507 21 O -0.523 6.523 22 C -0.030 4.030 23 C -0.196 4.196 24 C -0.212 4.212 25 H 0.265 0.735 26 H 0.028 0.972 27 H 0.109 0.891 28 H 0.397 0.603 29 H 0.188 0.812 30 H 0.416 0.584 31 H 0.160 0.840 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 2.114 13.006 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.038 3.962 10 C 0.040 3.960 11 N -0.332 5.332 12 C 0.362 3.638 13 O -0.443 6.443 14 C -0.227 4.227 15 C -0.057 4.057 16 N -0.114 5.114 17 H 0.264 0.736 18 C -0.173 4.173 19 C 0.402 3.598 20 O -0.395 6.395 21 O -0.336 6.336 22 C -0.057 4.057 23 C -0.235 4.235 24 C -0.249 4.249 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.126 0.874 28 H 0.231 0.769 29 H 0.205 0.795 30 H 0.275 0.725 31 H 0.178 0.822 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.410 1.817 12.839 13.696 hybrid contribution 1.177 1.493 0.573 1.985 sum 5.587 3.310 13.412 14.901 Atomic orbital electron populations 1.69840 1.05879 1.27136 1.47044 1.24971 0.94709 0.98919 0.94217 0.86698 0.79627 0.83207 0.78734 1.20257 1.21233 1.20148 1.20437 0.93964 0.88909 1.50681 0.92079 1.19181 0.94141 0.88907 0.93970 1.21015 0.98104 0.95508 0.81399 1.45606 1.14423 1.60981 1.12198 1.17219 0.84860 0.79676 0.82072 1.90714 1.21345 1.49373 1.82838 1.19993 0.94048 1.10610 0.98019 1.22739 0.99771 0.96446 0.86763 1.41662 1.11148 1.44002 1.14580 0.73605 1.18780 0.87421 1.16230 0.94916 1.19493 0.82639 0.74477 0.83218 1.90969 1.19892 1.55322 1.73286 1.84561 1.45987 1.69670 1.33392 1.21159 0.99663 0.94640 0.90206 1.22917 0.99466 1.06762 0.94351 1.22964 0.96755 1.02157 1.03073 0.92452 0.95356 0.87373 0.76876 0.79507 0.72505 0.82216 0.91478 0.90252 0.90693 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.52 10.75 55.43 0.60 -21.92 16 2 C 0.08 1.90 5.13 -17.82 -0.09 1.80 16 3 Si 0.89 19.12 29.55 -169.99 -5.02 14.10 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.50 -12.21 8.27 -34.44 -0.28 -12.50 16 8 H 0.06 1.48 7.84 -52.49 -0.41 1.07 16 9 C 0.04 0.88 2.00 -155.66 -0.31 0.57 16 10 C 0.16 3.77 4.75 -4.04 -0.02 3.75 16 11 N -0.69 -14.15 5.26 -61.39 -0.32 -14.47 16 12 C 0.58 11.97 7.80 -12.53 -0.10 11.88 16 13 O -0.56 -13.71 16.92 5.27 0.09 -13.62 16 14 C -0.22 -3.63 6.13 -105.02 -0.64 -4.27 16 15 C 0.09 1.07 11.43 -16.50 -0.19 0.88 16 16 N -0.52 -5.48 6.01 -9.32 -0.06 -5.54 16 17 H 0.43 3.02 8.96 -40.82 -0.37 2.65 16 18 C -0.07 -0.86 7.02 -82.43 -0.58 -1.44 16 19 C 0.56 6.81 8.31 34.12 0.28 7.09 16 20 O -0.51 -7.71 17.65 -19.34 -0.34 -8.05 16 21 O -0.52 -4.25 13.44 -40.98 -0.55 -4.80 16 22 C -0.03 -0.48 10.37 -39.08 -0.41 -0.89 16 23 C -0.20 -4.23 9.96 -26.69 -0.27 -4.50 16 24 C -0.21 -4.29 9.92 -26.69 -0.26 -4.56 16 25 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 26 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 27 H 0.11 2.87 6.04 -51.93 -0.31 2.55 16 28 H 0.40 7.49 6.85 -40.82 -0.28 7.21 16 29 H 0.19 1.85 7.45 -52.49 -0.39 1.46 16 30 H 0.42 1.50 9.11 45.56 0.42 1.92 16 31 H 0.16 2.62 8.06 -52.49 -0.42 2.19 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -31.89 315.26 -6.74 -38.63 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -3.01 Total: 13.11 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.87 Total: -2.19 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.22 Total: -41.94 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.80 Total: -26.47 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.89 -6.74 -38.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.663 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds