Wall clock time and date at job start Tue Mar 31 2020 00:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00454 * 2 1 4 4 H 1.48492 * 109.47069 * 240.00298 * 3 2 1 5 5 H 1.48500 * 109.46751 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46808 * 120.00093 * 3 2 1 7 7 C 1.37876 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00233 * 169.41923 * 7 2 1 9 9 C 1.50700 * 120.00142 * 349.41461 * 7 2 1 10 10 C 1.53002 * 115.54996 * 325.11102 * 9 7 2 11 11 N 1.46497 * 109.47449 * 306.42455 * 10 9 7 12 12 C 1.34779 * 120.00200 * 183.69173 * 11 10 9 13 13 O 1.21606 * 119.99654 * 5.76603 * 12 11 10 14 14 C 1.47397 * 119.99924 * 185.76418 * 12 11 10 15 15 C 1.38237 * 126.45619 * 354.86645 * 14 12 11 16 16 N 1.34239 * 108.41365 * 179.97438 * 15 14 12 17 17 H 0.97000 * 125.39773 * 180.02562 * 16 15 14 18 18 C 1.37826 * 109.21168 * 359.74390 * 16 15 14 19 19 C 1.46628 * 125.86560 * 180.27621 * 18 16 15 20 20 O 1.21602 * 120.00619 * 180.18282 * 19 18 16 21 21 O 1.34878 * 119.99823 * 0.17489 * 19 18 16 22 22 C 1.36454 * 108.27775 * 0.42634 * 18 16 15 23 23 C 1.52998 * 117.50223 * 110.78630 * 9 7 2 24 24 C 1.52999 * 117.49879 * 179.44911 * 9 7 2 25 25 H 0.97009 * 119.99697 * 5.02592 * 1 2 3 26 26 H 1.08996 * 109.47296 * 186.41758 * 10 9 7 27 27 H 1.09000 * 109.46745 * 66.42326 * 10 9 7 28 28 H 0.97006 * 120.00054 * 3.68871 * 11 10 9 29 29 H 1.07998 * 125.79492 * 359.96316 * 15 14 12 30 30 H 0.96701 * 116.99676 * 180.02562 * 21 19 18 31 31 H 1.08000 * 126.49795 * 179.83684 * 22 18 16 32 32 H 1.09000 * 117.50275 * 215.00456 * 23 9 7 33 33 H 1.08996 * 117.49576 * 0.02562 * 23 9 7 34 34 H 1.09004 * 117.50270 * 359.97049 * 24 9 7 35 35 H 1.09000 * 117.49981 * 144.97369 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0706 -1.2021 -0.1723 9 6 1.2701 -2.4882 0.2386 10 6 0.1019 -2.4117 1.2238 11 7 0.5635 -1.8244 2.4840 12 6 -0.2800 -1.7261 3.5306 13 8 -1.3901 -2.2184 3.4651 14 6 0.1430 -1.0219 4.7544 15 6 1.3981 -0.5026 5.0112 16 7 1.3830 0.0602 6.2298 17 1 2.1362 0.4987 6.6555 18 6 0.1260 -0.0782 6.7777 19 6 -0.2956 0.4096 8.0946 20 8 -1.4358 0.2252 8.4750 21 8 0.5813 1.0628 8.8842 22 6 -0.6581 -0.7502 5.8857 23 6 1.1375 -3.4537 -0.9408 24 6 2.0890 -3.7803 0.2130 25 1 -0.4850 0.8369 -0.0736 26 1 -0.2829 -3.4144 1.4096 27 1 -0.6889 -1.7914 0.8020 28 1 1.4763 -1.5062 2.5653 29 1 2.2469 -0.5430 4.3446 30 1 0.2574 1.3652 9.7437 31 1 -1.6957 -1.0193 6.0178 32 1 0.2180 -4.0343 -1.0150 33 1 1.5818 -3.1531 -1.8896 34 1 3.1589 -3.6945 0.0226 35 1 1.7957 -4.5757 0.8981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:07 Heat of formation + Delta-G solvation = -83.598816 kcal Electronic energy + Delta-G solvation = -21099.483924 eV Core-core repulsion = 17676.981460 eV Total energy + Delta-G solvation = -3422.502464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.63895 -40.78977 -39.97128 -38.31750 -37.15713 -34.76161 -34.07493 -32.47005 -31.01079 -27.95944 -27.23091 -24.94792 -23.72747 -22.88361 -21.44878 -21.11393 -20.71558 -19.87895 -18.76975 -18.16873 -17.24550 -16.93218 -16.66269 -16.57366 -16.21156 -15.93158 -15.35634 -14.94578 -14.74667 -14.50899 -14.42200 -14.06098 -13.58214 -13.45075 -13.29592 -12.78461 -12.68767 -12.60531 -12.26532 -12.01030 -11.99908 -11.41893 -11.02928 -10.81904 -10.58596 -10.27970 -10.05986 -9.71196 -9.43536 -7.95622 -6.13170 0.09968 0.79510 1.47969 1.52127 1.59125 1.74017 1.89768 2.11509 2.47233 2.57264 2.74637 3.12481 3.70599 3.87779 4.02048 4.06537 4.30435 4.37082 4.59109 4.75095 4.80286 4.84103 4.86732 5.01631 5.17937 5.28929 5.37761 5.44313 5.54940 5.57617 5.65176 5.89984 5.98715 6.33146 6.44181 6.84601 6.88052 7.04943 7.50432 7.59039 8.98374 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.004900 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.228174 B = 5712.597891 C = 6467.882912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.039 3.961 3 Si 0.945 3.055 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.250 1.250 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.014 3.986 10 C 0.174 3.826 11 N -0.679 5.679 12 C 0.572 3.428 13 O -0.611 6.611 14 C -0.256 4.256 15 C 0.119 3.881 16 N -0.490 5.490 17 H 0.448 0.552 18 C -0.058 4.058 19 C 0.568 3.432 20 O -0.542 6.542 21 O -0.503 6.503 22 C -0.057 4.057 23 C -0.204 4.204 24 C -0.183 4.183 25 H 0.258 0.742 26 H 0.020 0.980 27 H 0.071 0.929 28 H 0.407 0.593 29 H 0.222 0.778 30 H 0.439 0.561 31 H 0.140 0.860 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 3.152 14.528 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.174 1.174 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.013 3.987 10 C 0.050 3.950 11 N -0.326 5.326 12 C 0.361 3.639 13 O -0.496 6.496 14 C -0.265 4.265 15 C -0.026 4.026 16 N -0.086 5.086 17 H 0.291 0.709 18 C -0.167 4.167 19 C 0.413 3.587 20 O -0.433 6.433 21 O -0.318 6.318 22 C -0.083 4.083 23 C -0.242 4.242 24 C -0.221 4.221 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.089 0.911 28 H 0.243 0.757 29 H 0.238 0.762 30 H 0.302 0.698 31 H 0.158 0.842 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.641 2.883 14.420 16.572 hybrid contribution 0.229 1.169 0.136 1.199 sum 7.870 4.052 14.556 17.036 Atomic orbital electron populations 1.70036 1.07365 1.27154 1.48564 1.25587 0.95086 1.01721 0.93948 0.85818 0.78346 0.79201 0.79528 1.20563 1.22627 1.17377 1.20639 0.94028 0.89532 1.50165 0.91809 1.19229 0.94923 0.89764 0.94768 1.20653 0.97539 0.94275 0.82532 1.45445 1.14861 1.60873 1.11376 1.17806 0.84056 0.78946 0.83079 1.90672 1.23425 1.51540 1.83928 1.19646 0.96523 1.13389 0.96953 1.23017 0.98711 0.93806 0.87113 1.41587 1.10882 1.42486 1.13649 0.70901 1.18700 0.87819 1.15129 0.95037 1.19247 0.82272 0.74088 0.83050 1.90970 1.21556 1.56750 1.73991 1.84498 1.44455 1.68422 1.34422 1.21078 0.99515 0.96407 0.91303 1.22941 1.00345 1.06627 0.94335 1.22954 0.96986 1.00437 1.01678 0.93271 0.96201 0.91133 0.75698 0.76188 0.69787 0.84213 0.91122 0.90595 0.89380 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.53 10.75 21.45 0.23 -47.30 16 2 C 0.04 1.88 5.13 84.65 0.43 2.31 16 3 Si 0.95 38.15 29.55 68.60 2.03 40.17 16 4 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.30 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 7 C -0.51 -24.03 8.27 25.60 0.21 -23.82 16 8 H 0.06 2.95 7.84 -2.91 -0.02 2.93 16 9 C 0.01 0.63 2.00 -52.93 -0.11 0.52 16 10 C 0.17 8.25 4.75 86.38 0.41 8.66 16 11 N -0.68 -28.13 5.26 -466.41 -2.46 -30.59 16 12 C 0.57 24.43 7.80 86.65 0.68 25.11 16 13 O -0.61 -31.49 16.92 -4.05 -0.07 -31.56 16 14 C -0.26 -8.45 6.13 -20.12 -0.12 -8.57 16 15 C 0.12 2.60 11.43 84.32 0.96 3.56 16 16 N -0.49 -8.53 6.01 -183.40 -1.10 -9.63 16 17 H 0.45 4.08 8.96 -92.71 -0.83 3.24 16 18 C -0.06 -1.41 7.02 39.98 0.28 -1.13 16 19 C 0.57 12.68 8.31 70.01 0.58 13.26 16 20 O -0.54 -16.08 17.65 19.50 0.34 -15.74 16 21 O -0.50 -6.27 13.44 -57.91 -0.78 -7.05 16 22 C -0.06 -1.83 10.37 22.59 0.23 -1.60 16 23 C -0.20 -8.68 9.96 30.62 0.30 -8.37 16 24 C -0.18 -7.06 9.92 30.62 0.30 -6.75 16 25 H 0.26 13.56 8.32 -92.70 -0.77 12.79 16 26 H 0.02 0.95 8.06 -2.39 -0.02 0.93 16 27 H 0.07 3.92 6.04 -2.39 -0.01 3.91 16 28 H 0.41 14.81 6.85 -92.70 -0.64 14.18 16 29 H 0.22 3.32 7.45 -2.91 -0.02 3.30 16 30 H 0.44 1.48 9.11 -74.06 -0.67 0.81 16 31 H 0.14 4.94 8.06 -2.91 -0.02 4.91 16 32 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 35 H 0.08 2.94 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -71.66 315.26 1.40 -70.26 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.97 Total: 28.26 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 4.17 Total: 3.18 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -3.33 Total: -87.53 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -0.50 Total: -54.35 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.17 kcal Total: -71.66 1.40 -70.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.337 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds