Wall clock time and date at job start Tue Mar 31 2020 00:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00276 * 2 1 4 4 H 1.48497 * 109.46842 * 269.99913 * 3 2 1 5 5 H 1.48501 * 109.46711 * 29.99604 * 3 2 1 6 6 H 1.48499 * 109.47108 * 149.99468 * 3 2 1 7 7 C 1.37876 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00006 * 0.02562 * 7 2 1 10 10 O 1.42893 * 113.25542 * 47.04682 * 9 7 2 11 11 C 1.53512 * 114.17072 * 179.97438 * 9 7 2 12 12 N 1.47483 * 87.93165 * 139.67046 * 11 9 7 13 13 C 1.46901 * 110.99770 * 221.29721 * 12 11 9 14 14 H 1.09002 * 109.47401 * 54.99900 * 13 12 11 15 15 C 1.50699 * 109.47121 * 294.99928 * 13 12 11 16 16 O 1.20827 * 120.00172 * 0.02562 * 15 13 12 17 17 O 1.34231 * 120.00242 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.46921 * 174.99872 * 13 12 11 19 19 C 1.38670 * 120.41923 * 219.99443 * 18 13 12 20 20 C 1.38627 * 118.41843 * 180.02562 * 19 18 13 21 21 C 1.38223 * 119.16576 * 0.02562 * 20 19 18 22 22 N 1.31860 * 120.76220 * 359.97438 * 21 20 19 23 23 C 1.31882 * 121.72312 * 359.70426 * 22 21 20 24 24 C 1.47483 * 87.83647 * 332.98734 * 12 11 9 25 25 H 0.97003 * 119.99875 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00622 * 312.95530 * 10 9 7 27 27 H 1.09000 * 113.47383 * 24.90388 * 11 9 7 28 28 H 1.09001 * 113.47709 * 254.43614 * 11 9 7 29 29 H 0.96696 * 117.00233 * 180.02562 * 17 15 13 30 30 H 1.07999 * 120.78686 * 359.97438 * 19 18 13 31 31 H 1.08005 * 120.41685 * 180.02562 * 20 19 18 32 32 H 1.07991 * 119.61922 * 179.97438 * 21 20 19 33 33 H 1.08005 * 119.61805 * 180.31328 * 23 22 21 34 34 H 1.08998 * 113.47574 * 141.77527 * 24 12 11 35 35 H 1.08999 * 113.47553 * 272.24501 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.1945 -2.5407 -0.9607 11 6 2.1496 -3.7438 0.0005 12 7 1.2075 -4.3584 0.9544 13 6 1.9259 -5.0863 2.0089 14 1 2.6368 -4.4167 2.4930 15 6 2.6657 -6.2501 1.4013 16 8 2.6015 -6.4523 0.2118 17 8 3.3960 -7.0623 2.1815 18 6 0.9402 -5.5949 3.0291 19 6 1.2439 -5.5514 4.3814 20 6 0.3071 -6.0309 5.2838 21 6 -0.8899 -6.5333 4.8090 22 7 -1.1448 -6.5590 3.5155 23 6 -0.2799 -6.1058 2.6291 24 6 0.8555 -2.9966 1.3980 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3700 -1.7556 -0.9591 27 1 3.1390 -3.5650 0.4215 28 1 2.1863 -4.2529 -0.9626 29 1 3.8529 -7.7951 1.7464 30 1 2.1882 -5.1543 4.7234 31 1 0.5099 -6.0121 6.3444 32 1 -1.6247 -6.9090 5.5054 33 1 -0.5260 -6.1387 1.5779 34 1 -0.2046 -2.8724 1.6192 35 1 1.4995 -2.6185 2.1919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:06 Heat of formation + Delta-G solvation = -52.952478 kcal Electronic energy + Delta-G solvation = -21926.964416 eV Core-core repulsion = 18505.790877 eV Total energy + Delta-G solvation = -3421.173539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88472 -39.63840 -38.85698 -35.97395 -34.72620 -32.91290 -32.09685 -31.74349 -28.72789 -26.48489 -25.05099 -23.80321 -23.24926 -22.92978 -20.46663 -18.77955 -17.99453 -17.42925 -17.07668 -16.59542 -16.20741 -15.73482 -15.10103 -14.93842 -14.63411 -14.04306 -13.77437 -13.70105 -13.42963 -13.01419 -12.69150 -12.47967 -12.14179 -11.82568 -11.49197 -11.43873 -11.27662 -11.04521 -10.85267 -10.56845 -10.31317 -10.07080 -9.73435 -9.45349 -9.32378 -8.90487 -8.69915 -8.33906 -8.04468 -6.32507 -4.42916 1.11586 1.33521 2.33250 3.01824 3.16692 3.24368 3.26324 3.88401 4.20287 4.42082 4.56024 4.80185 4.88253 4.93113 5.04341 5.15179 5.30079 5.37689 5.52663 5.77815 5.86453 5.93594 6.08958 6.14649 6.19372 6.30950 6.51784 6.72719 6.77173 6.88714 7.00660 7.24679 7.67998 7.70918 7.92616 8.02317 8.06794 8.59645 9.27802 9.64566 10.73564 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.005512 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.557474 B = 5078.676378 C = 5617.452217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.567 6.567 11 C 0.012 3.988 12 N -0.449 5.449 13 C 0.102 3.898 14 H 0.090 0.910 15 C 0.484 3.516 16 O -0.486 6.486 17 O -0.519 6.519 18 C -0.125 4.125 19 C -0.057 4.057 20 C -0.179 4.179 21 C 0.096 3.904 22 N -0.488 5.488 23 C 0.136 3.864 24 C -0.017 4.017 25 H 0.272 0.728 26 H 0.391 0.609 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.406 0.594 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.166 0.834 34 H 0.075 0.925 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -9.879 10.039 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.379 6.379 11 C -0.117 4.117 12 N -0.173 5.173 13 C -0.009 4.009 14 H 0.108 0.892 15 C 0.324 3.676 16 O -0.370 6.370 17 O -0.331 6.331 18 C -0.128 4.128 19 C -0.084 4.084 20 C -0.199 4.199 21 C -0.061 4.061 22 N -0.196 5.196 23 C -0.021 4.021 24 C -0.146 4.146 25 H 0.083 0.917 26 H 0.246 0.754 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.265 0.735 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.093 0.907 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.275 -10.900 9.253 14.478 hybrid contribution 2.044 1.769 0.727 2.799 sum 4.319 -9.131 9.980 14.199 Atomic orbital electron populations 1.69294 1.06126 1.27972 1.50280 1.25068 0.94989 0.99738 0.93255 0.86383 0.79702 0.82238 0.78466 1.20227 1.20928 1.19725 1.21549 0.93680 0.90361 1.51826 0.91469 1.19329 0.85174 0.90676 0.84010 1.86056 1.45162 1.48085 1.58583 1.24069 0.94609 0.95872 0.97128 1.69158 1.26292 1.14232 1.07627 1.20756 0.93776 0.92562 0.93802 0.89240 1.23207 0.76445 0.82771 0.85208 1.90744 1.59253 1.70505 1.16548 1.84530 1.61091 1.41935 1.45565 1.20340 0.96885 1.01909 0.93660 1.21467 0.99236 0.95560 0.92130 1.22046 0.95502 1.01635 1.00734 1.22811 0.95434 0.95399 0.92413 1.67815 1.33143 1.15890 1.02776 1.22836 0.88355 0.90745 1.00127 1.24829 1.01404 0.85858 1.02477 0.91711 0.75359 0.92016 0.89865 0.73525 0.84772 0.84814 0.82956 0.81679 0.90683 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.56 11.02 55.43 0.61 -22.95 16 2 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 3 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.54 -13.91 8.68 -34.44 -0.30 -14.21 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.25 6.21 1.57 -91.24 -0.14 6.07 16 10 O -0.57 -15.27 13.54 -35.23 -0.48 -15.74 16 11 C 0.01 0.25 5.61 -7.54 -0.04 0.21 16 12 N -0.45 -9.11 5.14 -239.37 -1.23 -10.34 16 13 C 0.10 1.68 1.81 -70.02 -0.13 1.56 16 14 H 0.09 1.38 7.45 -51.93 -0.39 0.99 16 15 C 0.48 7.71 7.38 36.01 0.27 7.98 16 16 O -0.49 -9.23 15.84 -18.75 -0.30 -9.52 16 17 O -0.52 -6.23 13.34 -39.26 -0.52 -6.75 16 18 C -0.13 -1.92 4.61 -104.48 -0.48 -2.40 16 19 C -0.06 -0.73 9.82 -39.28 -0.39 -1.11 16 20 C -0.18 -2.00 10.11 -39.44 -0.40 -2.40 16 21 C 0.10 1.20 11.18 -17.54 -0.20 1.00 16 22 N -0.49 -7.66 10.36 -13.25 -0.14 -7.80 16 23 C 0.14 2.26 10.49 -17.55 -0.18 2.07 16 24 C -0.02 -0.38 6.87 -7.53 -0.05 -0.43 16 25 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 26 H 0.39 10.66 6.33 45.56 0.29 10.94 16 27 H 0.06 1.26 7.80 -51.93 -0.41 0.85 16 28 H 0.08 1.93 7.85 -51.93 -0.41 1.53 16 29 H 0.41 3.05 9.10 45.56 0.41 3.46 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.17 2.95 7.72 -52.48 -0.40 2.54 16 34 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.06 1.32 7.57 -51.93 -0.39 0.93 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -30.48 305.90 -7.14 -37.62 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -2.53 Total: 15.90 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.14 Total: 0.09 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -0.76 Total: -41.09 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.30 Total: -32.02 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.48 -7.14 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.332 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds