Wall clock time and date at job start Tue Mar 31 2020 00:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00276 * 2 1 4 4 H 1.48497 * 109.46842 * 269.99913 * 3 2 1 5 5 H 1.48501 * 109.46711 * 29.99604 * 3 2 1 6 6 H 1.48499 * 109.47108 * 149.99468 * 3 2 1 7 7 C 1.37876 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00311 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00006 * 0.02562 * 7 2 1 10 10 O 1.42893 * 113.25542 * 47.04682 * 9 7 2 11 11 C 1.53512 * 114.17072 * 179.97438 * 9 7 2 12 12 N 1.47483 * 87.93165 * 139.67046 * 11 9 7 13 13 C 1.46901 * 110.99770 * 221.29721 * 12 11 9 14 14 H 1.09002 * 109.47401 * 54.99900 * 13 12 11 15 15 C 1.50699 * 109.47121 * 294.99928 * 13 12 11 16 16 O 1.20827 * 120.00172 * 0.02562 * 15 13 12 17 17 O 1.34231 * 120.00242 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.46921 * 174.99872 * 13 12 11 19 19 C 1.38670 * 120.41923 * 219.99443 * 18 13 12 20 20 C 1.38627 * 118.41843 * 180.02562 * 19 18 13 21 21 C 1.38223 * 119.16576 * 0.02562 * 20 19 18 22 22 N 1.31860 * 120.76220 * 359.97438 * 21 20 19 23 23 C 1.31882 * 121.72312 * 359.70426 * 22 21 20 24 24 C 1.47483 * 87.83647 * 332.98734 * 12 11 9 25 25 H 0.97003 * 119.99875 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00622 * 312.95530 * 10 9 7 27 27 H 1.09000 * 113.47383 * 24.90388 * 11 9 7 28 28 H 1.09001 * 113.47709 * 254.43614 * 11 9 7 29 29 H 0.96696 * 117.00233 * 180.02562 * 17 15 13 30 30 H 1.07999 * 120.78686 * 359.97438 * 19 18 13 31 31 H 1.08005 * 120.41685 * 180.02562 * 20 19 18 32 32 H 1.07991 * 119.61922 * 179.97438 * 21 20 19 33 33 H 1.08005 * 119.61805 * 180.31328 * 23 22 21 34 34 H 1.08998 * 113.47574 * 141.77527 * 24 12 11 35 35 H 1.08999 * 113.47553 * 272.24501 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.1945 -2.5407 -0.9607 11 6 2.1496 -3.7438 0.0005 12 7 1.2075 -4.3584 0.9544 13 6 1.9259 -5.0863 2.0089 14 1 2.6368 -4.4167 2.4930 15 6 2.6657 -6.2501 1.4013 16 8 2.6015 -6.4523 0.2118 17 8 3.3960 -7.0623 2.1815 18 6 0.9402 -5.5949 3.0291 19 6 1.2439 -5.5514 4.3814 20 6 0.3071 -6.0309 5.2838 21 6 -0.8899 -6.5333 4.8090 22 7 -1.1448 -6.5590 3.5155 23 6 -0.2799 -6.1058 2.6291 24 6 0.8555 -2.9966 1.3980 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3700 -1.7556 -0.9591 27 1 3.1390 -3.5650 0.4215 28 1 2.1863 -4.2529 -0.9626 29 1 3.8529 -7.7951 1.7464 30 1 2.1882 -5.1543 4.7234 31 1 0.5099 -6.0121 6.3444 32 1 -1.6247 -6.9090 5.5054 33 1 -0.5260 -6.1387 1.5779 34 1 -0.2046 -2.8724 1.6192 35 1 1.4995 -2.6185 2.1919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:06 Heat of formation + Delta-G solvation = -78.116150 kcal Electronic energy + Delta-G solvation = -21928.055594 eV Core-core repulsion = 18505.790877 eV Total energy + Delta-G solvation = -3422.264718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.21105 -40.74938 -40.41961 -37.18789 -36.46324 -34.29171 -34.05847 -32.83223 -30.13760 -28.21427 -26.79201 -25.34101 -24.43318 -24.03999 -21.77251 -20.59384 -19.31948 -19.18371 -18.14310 -17.84577 -17.41470 -17.09217 -16.99043 -16.49858 -16.01863 -15.57475 -15.19636 -14.89836 -14.75201 -14.17326 -14.04042 -13.98727 -13.79789 -13.39944 -13.25636 -12.89759 -12.80289 -12.61186 -12.39154 -12.22831 -12.16278 -11.66298 -11.23542 -10.75581 -10.64879 -10.45845 -10.13943 -9.98885 -9.80820 -8.26069 -6.44372 0.06836 0.32566 1.09215 1.43551 1.46099 1.55671 1.85694 2.37334 2.78603 2.95573 3.10404 3.33175 3.68443 3.78767 3.93894 4.03594 4.04607 4.13882 4.25959 4.32110 4.34569 4.48559 4.63135 4.85013 4.88291 5.08340 5.15018 5.20845 5.30062 5.34019 5.50231 5.73327 5.75370 5.93472 6.09103 6.61773 6.92712 7.01310 7.29232 7.55382 8.79475 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.005512 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.557474 B = 5078.676378 C = 5617.452217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.028 3.972 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.221 3.779 10 O -0.584 6.584 11 C 0.024 3.976 12 N -0.456 5.456 13 C 0.100 3.900 14 H 0.109 0.891 15 C 0.493 3.507 16 O -0.525 6.525 17 O -0.502 6.502 18 C -0.138 4.138 19 C -0.057 4.057 20 C -0.162 4.162 21 C 0.091 3.909 22 N -0.516 5.516 23 C 0.111 3.889 24 C 0.002 3.998 25 H 0.275 0.725 26 H 0.384 0.616 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.429 0.571 30 H 0.163 0.837 31 H 0.178 0.822 32 H 0.186 0.814 33 H 0.135 0.865 34 H 0.053 0.947 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 -10.004 12.941 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.172 4.172 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.180 3.820 10 O -0.396 6.396 11 C -0.105 4.105 12 N -0.180 5.180 13 C -0.011 4.011 14 H 0.126 0.874 15 C 0.334 3.666 16 O -0.413 6.413 17 O -0.315 6.315 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.182 4.182 21 C -0.066 4.066 22 N -0.225 5.225 23 C -0.045 4.045 24 C -0.127 4.127 25 H 0.085 0.915 26 H 0.239 0.761 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.291 0.709 30 H 0.181 0.819 31 H 0.195 0.805 32 H 0.203 0.797 33 H 0.153 0.847 34 H 0.071 0.929 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.816 -11.064 12.169 16.883 hybrid contribution 1.556 1.684 -0.070 2.294 sum 5.371 -9.379 12.098 16.223 Atomic orbital electron populations 1.69378 1.07325 1.28776 1.50557 1.25831 0.95754 1.02834 0.92766 0.85371 0.78709 0.78169 0.78269 1.20335 1.20528 1.18803 1.21799 0.93919 0.91244 1.52421 0.91271 1.19730 0.85408 0.91773 0.85127 1.86041 1.45845 1.47829 1.59861 1.23898 0.95135 0.94400 0.97033 1.68985 1.26828 1.13431 1.08711 1.20748 0.94420 0.92940 0.92988 0.87388 1.23015 0.76116 0.82822 0.84608 1.90744 1.60787 1.71631 1.18173 1.84452 1.60258 1.42164 1.44637 1.20243 0.96122 1.02955 0.94725 1.21844 1.00738 0.94910 0.90808 1.22511 0.94001 0.99018 1.02632 1.23473 0.96924 0.94698 0.91540 1.67755 1.33575 1.16819 1.04363 1.22489 0.89707 0.93013 0.99318 1.24488 1.00176 0.86918 1.01083 0.91515 0.76083 0.90381 0.91859 0.70910 0.81908 0.80470 0.79684 0.84707 0.92863 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.06 11.02 21.45 0.24 -48.83 16 2 C 0.03 1.44 5.39 84.65 0.46 1.90 16 3 Si 0.97 40.53 29.54 68.60 2.03 42.56 16 4 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.56 -29.04 8.68 25.60 0.22 -28.82 16 8 H 0.07 3.49 7.81 -2.91 -0.02 3.46 16 9 C 0.22 11.24 1.57 -11.19 -0.02 11.22 16 10 O -0.58 -32.86 13.54 -148.98 -2.02 -34.87 16 11 C 0.02 1.07 5.61 83.58 0.47 1.54 16 12 N -0.46 -18.84 5.14 -911.60 -4.68 -23.52 16 13 C 0.10 3.21 1.81 43.42 0.08 3.29 16 14 H 0.11 3.08 7.45 -2.39 -0.02 3.06 16 15 C 0.49 15.24 7.38 71.24 0.53 15.76 16 16 O -0.53 -20.11 15.84 21.96 0.35 -19.76 16 17 O -0.50 -10.75 13.34 -51.42 -0.69 -11.43 16 18 C -0.14 -4.06 4.61 -19.77 -0.09 -4.15 16 19 C -0.06 -1.23 9.82 22.47 0.22 -1.01 16 20 C -0.16 -2.91 10.11 22.36 0.23 -2.68 16 21 C 0.09 1.99 11.18 84.69 0.95 2.94 16 22 N -0.52 -15.96 10.36 -195.84 -2.03 -17.99 16 23 C 0.11 3.74 10.49 84.67 0.89 4.63 16 24 C 0.00 0.10 6.87 83.58 0.57 0.68 16 25 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 26 H 0.38 21.97 6.33 -74.06 -0.47 21.50 16 27 H 0.08 3.16 7.80 -2.39 -0.02 3.14 16 28 H 0.06 3.05 7.85 -2.39 -0.02 3.03 16 29 H 0.43 5.28 9.10 -74.06 -0.67 4.60 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.19 2.69 8.06 -2.92 -0.02 2.66 16 33 H 0.14 5.20 7.72 -2.91 -0.02 5.18 16 34 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 3.09 7.57 -2.39 -0.02 3.07 16 Total: -1.00 -68.18 305.90 -2.31 -70.49 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: 0.00 Total: 38.07 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 4.50 Total: 5.29 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -6.48 Total: -90.34 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -2.36 Total: -66.07 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -68.18 -2.31 -70.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.630 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds