Wall clock time and date at job start Tue Mar 31 2020 00:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47034 * 300.00268 * 3 2 1 6 6 H 1.48508 * 109.47093 * 60.00082 * 3 2 1 7 7 C 1.37876 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99851 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.38408 * 46.91904 * 9 7 2 11 11 C 1.53509 * 114.17149 * 180.02562 * 9 7 2 12 12 N 1.47476 * 87.93431 * 139.66762 * 11 9 7 13 13 C 1.46899 * 111.00385 * 221.29683 * 12 11 9 14 14 H 1.09000 * 109.47371 * 51.91456 * 13 12 11 15 15 C 1.50696 * 109.47416 * 171.91558 * 13 12 11 16 16 O 1.20823 * 119.99953 * 26.16968 * 15 13 12 17 17 O 1.34234 * 120.00281 * 206.16362 * 15 13 12 18 18 C 1.50700 * 109.47097 * 291.91803 * 13 12 11 19 19 C 1.38678 * 120.41935 * 139.71972 * 18 13 12 20 20 C 1.38628 * 118.42019 * 179.78190 * 19 18 13 21 21 C 1.38225 * 119.15842 * 0.51595 * 20 19 18 22 22 N 1.31851 * 120.76525 * 359.72136 * 21 20 19 23 23 C 1.31879 * 121.72877 * 0.02562 * 22 21 20 24 24 C 1.47477 * 87.83595 * 332.98804 * 12 11 9 25 25 H 0.97001 * 120.00303 * 359.97438 * 1 2 3 26 26 H 0.96698 * 113.99759 * 313.08262 * 10 9 7 27 27 H 1.09009 * 113.47749 * 24.90432 * 11 9 7 28 28 H 1.08998 * 113.47749 * 254.43838 * 11 9 7 29 29 H 0.96698 * 116.99750 * 179.97438 * 17 15 13 30 30 H 1.08003 * 120.79085 * 0.02562 * 19 18 13 31 31 H 1.08000 * 120.41898 * 180.21431 * 20 19 18 32 32 H 1.08006 * 119.61654 * 179.74908 * 21 20 19 33 33 H 1.07999 * 119.62128 * 179.97438 * 23 22 21 34 34 H 1.09001 * 113.47435 * 141.77306 * 24 12 11 35 35 H 1.08993 * 113.48249 * 272.23869 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.1913 -2.5422 -0.9581 11 6 2.1497 -3.7437 -0.0005 12 7 1.2077 -4.3583 0.9533 13 6 1.9261 -5.0862 2.0079 14 1 2.6750 -4.4325 2.4550 15 6 0.9499 -5.5296 3.0667 16 8 -0.2108 -5.7073 2.7819 17 8 1.3697 -5.7272 4.3263 18 6 2.6041 -6.2933 1.4126 19 6 3.8802 -6.6535 1.8188 20 6 4.4628 -7.7740 1.2473 21 6 3.7618 -8.4836 0.2904 22 7 2.5517 -8.1089 -0.0753 23 6 1.9646 -7.0515 0.4505 24 6 0.8557 -2.9966 1.3969 25 1 -0.4850 0.8400 0.0004 26 1 -0.3731 -1.7571 -0.9556 27 1 3.1392 -3.5650 0.4205 28 1 2.1865 -4.2528 -0.9636 29 1 0.7067 -6.0110 4.9706 30 1 4.4060 -6.0771 2.5657 31 1 5.4539 -8.0858 1.5424 32 1 4.2103 -9.3554 -0.1628 33 1 0.9725 -6.7750 0.1255 34 1 -0.2044 -2.8725 1.6181 35 1 1.4996 -2.6184 2.1908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:09 Heat of formation + Delta-G solvation = -54.129337 kcal Electronic energy + Delta-G solvation = -21896.871635 eV Core-core repulsion = 18475.647063 eV Total energy + Delta-G solvation = -3421.224571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88513 -39.62580 -38.90737 -35.94483 -34.75073 -32.92055 -32.11634 -31.76316 -28.81728 -26.47453 -25.12003 -23.83694 -23.27158 -22.96430 -20.43883 -18.82809 -17.94124 -17.48796 -17.10893 -16.53079 -16.18626 -15.86978 -15.11446 -14.84133 -14.65303 -14.06041 -13.94376 -13.74436 -13.31417 -13.06194 -12.82893 -12.50873 -12.10841 -11.83518 -11.58083 -11.43210 -11.24875 -10.98107 -10.90140 -10.50538 -10.36638 -10.12216 -9.77447 -9.44208 -9.37668 -8.98822 -8.73026 -8.36595 -8.05329 -6.33950 -4.44550 1.04635 1.27743 2.37952 3.03886 3.14522 3.23889 3.27020 3.83923 4.19398 4.39330 4.52798 4.78793 4.84118 4.90987 4.99529 5.11692 5.32984 5.34873 5.48471 5.74003 5.81728 5.91622 6.02267 6.11066 6.16613 6.27361 6.55332 6.58458 6.73163 6.85319 6.97997 7.22232 7.65588 7.69313 7.89896 8.01387 8.07628 8.58311 9.26380 9.62360 10.72322 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.005307 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.317573 B = 5274.923190 C = 5671.231578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.253 3.747 10 O -0.567 6.567 11 C 0.010 3.990 12 N -0.447 5.447 13 C 0.104 3.896 14 H 0.086 0.914 15 C 0.486 3.514 16 O -0.484 6.484 17 O -0.521 6.521 18 C -0.133 4.133 19 C -0.059 4.059 20 C -0.180 4.180 21 C 0.098 3.902 22 N -0.488 5.488 23 C 0.140 3.860 24 C -0.025 4.025 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.407 0.593 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.076 0.924 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.542 -10.794 6.538 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.211 3.789 10 O -0.379 6.379 11 C -0.118 4.118 12 N -0.171 5.171 13 C -0.007 4.007 14 H 0.103 0.897 15 C 0.325 3.675 16 O -0.368 6.368 17 O -0.333 6.333 18 C -0.136 4.136 19 C -0.086 4.086 20 C -0.200 4.200 21 C -0.059 4.059 22 N -0.196 5.196 23 C -0.017 4.017 24 C -0.154 4.154 25 H 0.083 0.917 26 H 0.248 0.752 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.265 0.735 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.186 0.814 34 H 0.095 0.905 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.631 -12.154 5.189 14.785 hybrid contribution 0.896 2.223 1.819 3.009 sum 7.527 -9.931 7.009 14.297 Atomic orbital electron populations 1.69299 1.06154 1.27923 1.50217 1.25075 0.94983 0.99793 0.93226 0.86327 0.80019 0.82541 0.77881 1.19543 1.20574 1.20722 1.21572 0.93712 0.90291 1.51855 0.91344 1.19272 0.85046 0.90547 0.84011 1.86045 1.44908 1.48154 1.58836 1.24125 0.95156 0.96200 0.96335 1.69158 1.25868 1.14266 1.07788 1.20662 0.93517 0.95154 0.91359 0.89679 1.23124 0.88467 0.74043 0.81843 1.90721 1.19247 1.45526 1.81313 1.84525 1.47084 1.80975 1.20747 1.20385 0.95588 0.97576 1.00044 1.21521 0.93733 0.95712 0.97619 1.22063 1.01654 0.96922 0.99360 1.22849 0.90628 0.98539 0.93859 1.67835 1.10698 1.15129 1.25929 1.22908 1.00064 0.88314 0.90439 1.24861 1.01651 0.86305 1.02622 0.91724 0.75244 0.91413 0.90487 0.73487 0.84592 0.84716 0.82865 0.81410 0.90514 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.58 11.02 55.43 0.61 -22.97 16 2 C 0.07 1.84 5.40 -17.82 -0.10 1.74 16 3 Si 0.91 19.82 29.54 -169.99 -5.02 14.79 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -13.78 8.69 -34.44 -0.30 -14.08 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.25 6.24 1.57 -91.24 -0.14 6.09 16 10 O -0.57 -15.20 13.54 -35.23 -0.48 -15.67 16 11 C 0.01 0.21 6.50 -7.56 -0.05 0.16 16 12 N -0.45 -9.07 5.03 -239.42 -1.21 -10.27 16 13 C 0.10 1.74 1.79 -70.02 -0.13 1.61 16 14 H 0.09 1.32 7.45 -51.93 -0.39 0.94 16 15 C 0.49 8.07 7.13 36.00 0.26 8.33 16 16 O -0.48 -9.58 17.39 -18.75 -0.33 -9.91 16 17 O -0.52 -6.59 13.42 -39.27 -0.53 -7.11 16 18 C -0.13 -2.02 4.32 -104.48 -0.45 -2.47 16 19 C -0.06 -0.73 9.82 -39.27 -0.39 -1.11 16 20 C -0.18 -1.92 10.11 -39.44 -0.40 -2.32 16 21 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 22 N -0.49 -7.52 10.36 -13.25 -0.14 -7.66 16 23 C 0.14 2.29 10.45 -17.55 -0.18 2.11 16 24 C -0.03 -0.58 6.78 -7.55 -0.05 -0.63 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.39 10.69 6.33 45.56 0.29 10.98 16 27 H 0.07 1.30 7.76 -51.92 -0.40 0.90 16 28 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.41 3.31 9.10 45.56 0.41 3.72 16 30 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.17 3.03 7.72 -52.49 -0.41 2.63 16 34 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 35 H 0.06 1.34 7.63 -51.93 -0.40 0.94 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -30.62 307.93 -7.11 -37.73 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -2.55 Total: 16.02 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.12 Total: 0.41 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.73 Total: -40.90 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.33 Total: -32.70 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.62 -7.11 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.396 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds