Wall clock time and date at job start Tue Mar 31 2020 00:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47034 * 300.00268 * 3 2 1 6 6 H 1.48508 * 109.47093 * 60.00082 * 3 2 1 7 7 C 1.37876 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99851 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.38408 * 46.91904 * 9 7 2 11 11 C 1.53509 * 114.17149 * 180.02562 * 9 7 2 12 12 N 1.47476 * 87.93431 * 139.66762 * 11 9 7 13 13 C 1.46899 * 111.00385 * 221.29683 * 12 11 9 14 14 H 1.09000 * 109.47371 * 51.91456 * 13 12 11 15 15 C 1.50696 * 109.47416 * 171.91558 * 13 12 11 16 16 O 1.20823 * 119.99953 * 26.16968 * 15 13 12 17 17 O 1.34234 * 120.00281 * 206.16362 * 15 13 12 18 18 C 1.50700 * 109.47097 * 291.91803 * 13 12 11 19 19 C 1.38678 * 120.41935 * 139.71972 * 18 13 12 20 20 C 1.38628 * 118.42019 * 179.78190 * 19 18 13 21 21 C 1.38225 * 119.15842 * 0.51595 * 20 19 18 22 22 N 1.31851 * 120.76525 * 359.72136 * 21 20 19 23 23 C 1.31879 * 121.72877 * 0.02562 * 22 21 20 24 24 C 1.47477 * 87.83595 * 332.98804 * 12 11 9 25 25 H 0.97001 * 120.00303 * 359.97438 * 1 2 3 26 26 H 0.96698 * 113.99759 * 313.08262 * 10 9 7 27 27 H 1.09009 * 113.47749 * 24.90432 * 11 9 7 28 28 H 1.08998 * 113.47749 * 254.43838 * 11 9 7 29 29 H 0.96698 * 116.99750 * 179.97438 * 17 15 13 30 30 H 1.08003 * 120.79085 * 0.02562 * 19 18 13 31 31 H 1.08000 * 120.41898 * 180.21431 * 20 19 18 32 32 H 1.08006 * 119.61654 * 179.74908 * 21 20 19 33 33 H 1.07999 * 119.62128 * 179.97438 * 23 22 21 34 34 H 1.09001 * 113.47435 * 141.77306 * 24 12 11 35 35 H 1.08993 * 113.48249 * 272.23869 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.1913 -2.5422 -0.9581 11 6 2.1497 -3.7437 -0.0005 12 7 1.2077 -4.3583 0.9533 13 6 1.9261 -5.0862 2.0079 14 1 2.6750 -4.4325 2.4550 15 6 0.9499 -5.5296 3.0667 16 8 -0.2108 -5.7073 2.7819 17 8 1.3697 -5.7272 4.3263 18 6 2.6041 -6.2933 1.4126 19 6 3.8802 -6.6535 1.8188 20 6 4.4628 -7.7740 1.2473 21 6 3.7618 -8.4836 0.2904 22 7 2.5517 -8.1089 -0.0753 23 6 1.9646 -7.0515 0.4505 24 6 0.8557 -2.9966 1.3969 25 1 -0.4850 0.8400 0.0004 26 1 -0.3731 -1.7571 -0.9556 27 1 3.1392 -3.5650 0.4205 28 1 2.1865 -4.2528 -0.9636 29 1 0.7067 -6.0110 4.9706 30 1 4.4060 -6.0771 2.5657 31 1 5.4539 -8.0858 1.5424 32 1 4.2103 -9.3554 -0.1628 33 1 0.9725 -6.7750 0.1255 34 1 -0.2044 -2.8725 1.6181 35 1 1.4996 -2.6184 2.1908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061953.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:09 Heat of formation + Delta-G solvation = -79.401821 kcal Electronic energy + Delta-G solvation = -21897.967532 eV Core-core repulsion = 18475.647063 eV Total energy + Delta-G solvation = -3422.320468 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.20614 -40.74541 -40.47647 -37.19514 -36.49483 -34.27397 -34.06126 -32.83358 -30.21563 -28.20632 -26.82048 -25.37021 -24.44047 -24.07479 -21.76045 -20.59808 -19.32632 -19.22191 -18.17907 -17.77241 -17.36206 -17.27703 -16.99418 -16.45546 -15.93922 -15.66712 -15.22759 -14.99623 -14.63983 -14.34896 -14.01823 -13.94192 -13.84414 -13.40531 -13.27891 -12.88046 -12.68137 -12.65791 -12.52863 -12.23716 -12.05743 -11.75017 -11.20459 -10.79364 -10.67049 -10.46687 -10.19828 -9.98864 -9.80636 -8.26452 -6.44841 0.02352 0.30177 1.09148 1.42739 1.46298 1.57343 1.85311 2.37447 2.76382 2.94543 3.11161 3.32106 3.67043 3.77393 3.96938 4.02040 4.02486 4.10021 4.21206 4.29939 4.39076 4.45164 4.61767 4.81877 4.84994 5.06093 5.12592 5.18777 5.27289 5.32556 5.48751 5.73283 5.73795 5.91957 6.07718 6.62462 6.91791 6.99816 7.29141 7.53440 8.79536 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.005307 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.317573 B = 5274.923190 C = 5671.231578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.025 3.975 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.223 3.777 10 O -0.584 6.584 11 C 0.028 3.972 12 N -0.457 5.457 13 C 0.103 3.897 14 H 0.105 0.895 15 C 0.491 3.509 16 O -0.527 6.527 17 O -0.504 6.504 18 C -0.146 4.146 19 C -0.057 4.057 20 C -0.161 4.161 21 C 0.093 3.907 22 N -0.516 5.516 23 C 0.115 3.885 24 C -0.013 4.013 25 H 0.274 0.726 26 H 0.384 0.616 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.428 0.572 30 H 0.166 0.834 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.134 0.866 34 H 0.045 0.955 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.858 -11.459 7.935 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.174 4.174 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.182 3.818 10 O -0.396 6.396 11 C -0.100 4.100 12 N -0.180 5.180 13 C -0.008 4.008 14 H 0.123 0.877 15 C 0.333 3.667 16 O -0.415 6.415 17 O -0.317 6.317 18 C -0.149 4.149 19 C -0.083 4.083 20 C -0.181 4.181 21 C -0.063 4.063 22 N -0.225 5.225 23 C -0.041 4.041 24 C -0.142 4.142 25 H 0.084 0.916 26 H 0.239 0.761 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.290 0.710 30 H 0.184 0.816 31 H 0.197 0.803 32 H 0.205 0.795 33 H 0.152 0.848 34 H 0.064 0.936 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.960 -12.840 6.617 17.546 hybrid contribution -0.078 2.289 1.433 2.702 sum 9.882 -10.551 8.051 16.547 Atomic orbital electron populations 1.69392 1.07472 1.28715 1.50733 1.25868 0.95718 1.03014 0.92818 0.85302 0.79065 0.78363 0.77648 1.18629 1.20700 1.20377 1.21844 0.94066 0.91057 1.52109 0.90807 1.19686 0.85361 0.92057 0.84681 1.86031 1.45648 1.47859 1.60044 1.23940 0.95493 0.94129 0.96439 1.68991 1.26884 1.13124 1.09044 1.20674 0.93543 0.95888 0.90658 0.87719 1.23123 0.87669 0.73100 0.82855 1.90715 1.20927 1.47611 1.82207 1.84454 1.47511 1.80233 1.19549 1.20259 0.96986 0.97094 1.00534 1.21893 0.92262 0.96312 0.97800 1.22534 1.02910 0.95248 0.97373 1.23521 0.89451 0.99428 0.93940 1.67772 1.12677 1.15135 1.26919 1.22497 0.99521 0.89907 0.92191 1.24589 0.99887 0.87980 1.01767 0.91575 0.76087 0.89229 0.91389 0.70968 0.81646 0.80262 0.79532 0.84808 0.93605 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.58 11.02 21.45 0.24 -49.34 16 2 C 0.03 1.31 5.40 84.65 0.46 1.76 16 3 Si 0.97 40.37 29.54 68.60 2.03 42.39 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -28.46 8.69 25.60 0.22 -28.24 16 8 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.22 11.24 1.57 -11.19 -0.02 11.22 16 10 O -0.58 -32.70 13.54 -148.98 -2.02 -34.72 16 11 C 0.03 1.18 6.50 83.57 0.54 1.73 16 12 N -0.46 -18.89 5.03 -911.79 -4.59 -23.48 16 13 C 0.10 3.35 1.79 43.42 0.08 3.43 16 14 H 0.11 2.99 7.45 -2.39 -0.02 2.97 16 15 C 0.49 16.05 7.13 71.23 0.51 16.56 16 16 O -0.53 -21.41 17.39 21.97 0.38 -21.03 16 17 O -0.50 -11.60 13.42 -51.46 -0.69 -12.29 16 18 C -0.15 -4.23 4.32 -19.77 -0.09 -4.32 16 19 C -0.06 -1.16 9.82 22.47 0.22 -0.94 16 20 C -0.16 -2.68 10.11 22.36 0.23 -2.46 16 21 C 0.09 1.95 11.18 84.69 0.95 2.90 16 22 N -0.52 -15.58 10.36 -195.84 -2.03 -17.60 16 23 C 0.11 3.84 10.45 84.67 0.88 4.72 16 24 C -0.01 -0.60 6.78 83.57 0.57 -0.03 16 25 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 26 H 0.38 22.07 6.33 -74.06 -0.47 21.60 16 27 H 0.09 3.31 7.76 -2.38 -0.02 3.29 16 28 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.43 6.00 9.10 -74.06 -0.67 5.33 16 30 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 33 H 0.13 5.24 7.72 -2.91 -0.02 5.21 16 34 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 3.11 7.63 -2.39 -0.02 3.09 16 Total: -1.00 -69.17 307.93 -2.13 -71.30 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: 0.00 Total: 38.43 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.55 Total: 6.33 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -6.38 Total: -90.42 kcal Atomic # 8 Polarization: -65.71 SS G_CDS: -2.33 Total: -68.03 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Total: -69.17 -2.13 -71.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061953.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.102 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds