Wall clock time and date at job start Tue Mar 31 2020 00:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00027 * 2 1 4 4 H 1.48497 * 109.47255 * 267.09652 * 3 2 1 5 5 H 1.48500 * 109.47100 * 27.09204 * 3 2 1 6 6 H 1.48494 * 109.47398 * 147.09165 * 3 2 1 7 7 C 1.37869 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00114 * 353.97069 * 7 2 1 9 9 C 1.50704 * 120.00070 * 173.97159 * 7 2 1 10 10 O 1.42902 * 110.28601 * 327.06563 * 9 7 2 11 11 C 1.54260 * 110.32313 * 204.93739 * 9 7 2 12 12 C 1.54379 * 105.15098 * 240.94543 * 11 9 7 13 13 N 1.48716 * 104.51622 * 336.27495 * 12 11 9 14 14 C 1.38427 * 111.01786 * 158.96480 * 13 12 11 15 15 C 1.39416 * 119.53132 * 64.21134 * 14 13 12 16 16 C 1.36838 * 119.38177 * 179.77230 * 15 14 13 17 17 C 1.40409 * 118.49050 * 0.49382 * 16 15 14 18 18 C 1.47396 * 120.48447 * 179.72626 * 17 16 15 19 19 O 1.21517 * 119.99779 * 0.02562 * 18 17 16 20 20 O 1.34760 * 120.00047 * 180.02562 * 18 17 16 21 21 C 1.39626 * 119.03272 * 359.75218 * 17 16 15 22 22 N 1.31653 * 120.51645 * 359.97438 * 21 17 16 23 23 C 1.48556 * 104.29399 * 39.35775 * 13 12 11 24 24 H 0.97002 * 119.99926 * 0.02562 * 1 2 3 25 25 H 0.96706 * 114.00139 * 294.05746 * 10 9 7 26 26 H 1.08998 * 110.32776 * 359.89919 * 11 9 7 27 27 H 1.09005 * 110.32091 * 122.00238 * 11 9 7 28 28 H 1.09005 * 110.40820 * 94.97794 * 12 11 9 29 29 H 1.08994 * 110.41669 * 217.41913 * 12 11 9 30 30 H 1.07999 * 120.30924 * 0.02562 * 15 14 13 31 31 H 1.07995 * 120.75659 * 180.24997 * 16 15 14 32 32 H 0.96703 * 116.99575 * 180.02562 * 20 18 17 33 33 H 1.08009 * 119.73983 * 180.02562 * 21 17 16 34 34 H 1.09001 * 110.41437 * 201.79868 * 23 13 12 35 35 H 1.09005 * 110.51324 * 79.40076 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5581 2.0110 -1.3982 5 1 1.4172 2.6697 0.6376 6 1 3.5146 1.4588 0.7606 7 6 2.0045 -1.1940 0.0005 8 1 1.4691 -2.1266 0.0992 9 6 3.5053 -1.1976 -0.1365 10 8 3.9297 -0.1141 -0.9659 11 6 3.9865 -2.5411 -0.7223 12 6 4.9060 -3.1469 0.3597 13 7 5.3704 -1.9770 1.1518 14 6 5.8057 -2.3681 2.4064 15 6 6.9192 -3.1994 2.5191 16 6 7.3496 -3.5803 3.7609 17 6 6.6415 -3.1242 4.8843 18 6 7.0631 -3.5125 6.2423 19 8 8.0303 -4.2319 6.3958 20 8 6.3760 -3.0695 7.3136 21 6 5.5317 -2.2980 4.6963 22 7 5.1545 -1.9509 3.4837 23 6 4.1731 -1.1034 1.2522 24 1 -0.4850 0.8401 -0.0004 25 1 3.6432 -0.1877 -1.8866 26 1 3.1375 -3.1986 -0.9091 27 1 4.5449 -2.3741 -1.6435 28 1 4.3460 -3.8356 0.9924 29 1 5.7522 -3.6558 -0.1017 30 1 7.4397 -3.5362 1.6348 31 1 8.2120 -4.2204 3.8743 32 1 6.6906 -3.3505 8.1838 33 1 4.9789 -1.9403 5.5524 34 1 4.4689 -0.0757 1.4628 35 1 3.4968 -1.4695 2.0247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:10 Heat of formation + Delta-G solvation = -81.030096 kcal Electronic energy + Delta-G solvation = -21463.906379 eV Core-core repulsion = 18041.515303 eV Total energy + Delta-G solvation = -3422.391076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97269 -39.94128 -38.30880 -36.26844 -35.47581 -32.72644 -32.34790 -31.73863 -29.23485 -28.36536 -25.25401 -24.24476 -23.27632 -22.06643 -20.76742 -19.61026 -18.40086 -17.75749 -17.53620 -16.91565 -16.24026 -15.82404 -15.35366 -14.88938 -14.53897 -14.36971 -14.03366 -13.96011 -13.33040 -13.11647 -12.77509 -12.73149 -12.36358 -12.04515 -11.76332 -11.55297 -11.42502 -11.06174 -10.93467 -10.58406 -10.22658 -10.10533 -10.04697 -9.76140 -9.42331 -9.16930 -8.60151 -8.50444 -8.09057 -6.17984 -4.30540 0.45436 1.22715 2.39107 2.84567 3.48387 3.54645 3.62090 3.73462 3.93899 4.42171 4.52429 4.73173 4.76172 4.97096 5.05707 5.12983 5.25059 5.28210 5.41319 5.60687 5.70646 5.78417 5.93544 6.07255 6.18316 6.25871 6.30345 6.47840 6.55901 6.61331 6.80981 7.09108 7.35174 7.52493 7.69300 7.95226 8.15191 8.66774 8.83212 9.44197 10.90828 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.004637 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.261273 B = 6036.755477 C = 6561.677994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.075 3.925 3 Si 0.948 3.052 4 H -0.292 1.292 5 H -0.326 1.326 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.221 3.779 10 O -0.561 6.561 11 C -0.143 4.143 12 C 0.051 3.949 13 N -0.464 5.464 14 C 0.353 3.647 15 C -0.199 4.199 16 C 0.007 3.993 17 C -0.232 4.232 18 C 0.540 3.460 19 O -0.524 6.524 20 O -0.512 6.512 21 C 0.195 3.805 22 N -0.521 5.521 23 C 0.054 3.946 24 H 0.266 0.734 25 H 0.369 0.631 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.413 0.587 33 H 0.170 0.830 34 H 0.084 0.916 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.637 -7.028 7.254 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.130 4.130 3 Si 0.783 3.217 4 H -0.220 1.220 5 H -0.258 1.258 6 H -0.194 1.194 7 C -0.593 4.593 8 H 0.097 0.903 9 C 0.181 3.819 10 O -0.368 6.368 11 C -0.182 4.182 12 C -0.074 4.074 13 N -0.180 5.180 14 C 0.121 3.879 15 C -0.221 4.221 16 C -0.018 4.018 17 C -0.237 4.237 18 C 0.385 3.615 19 O -0.414 6.414 20 O -0.324 6.324 21 C 0.035 3.965 22 N -0.235 5.235 23 C -0.071 4.071 24 H 0.076 0.924 25 H 0.217 0.783 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.272 0.728 33 H 0.187 0.813 34 H 0.102 0.898 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.544 -6.001 6.988 15.562 hybrid contribution 0.551 -0.352 0.601 0.888 sum 13.095 -6.353 7.589 16.414 Atomic orbital electron populations 1.69968 1.06869 1.27802 1.47763 1.25137 0.94872 1.00551 0.92430 0.85718 0.78005 0.80018 0.77954 1.21998 1.25763 1.19379 1.21317 0.88631 0.95233 1.54142 0.90339 1.19922 0.93568 0.82014 0.86382 1.86164 1.79144 1.47863 1.23664 1.23138 0.98167 0.99764 0.97093 1.23141 0.98298 0.90574 0.95350 1.62303 1.33149 1.14340 1.08214 1.20603 0.90250 0.86892 0.90200 1.21306 0.99154 1.03088 0.98584 1.21197 0.96595 0.93597 0.90402 1.19844 1.03625 1.09654 0.90608 1.20560 0.79540 0.76226 0.85175 1.90879 1.27479 1.36055 1.87016 1.84579 1.58138 1.71346 1.18311 1.23102 0.90395 0.88329 0.94702 1.67998 1.30287 1.26591 0.98611 1.23677 0.87641 0.96865 0.98953 0.92447 0.78323 0.90095 0.91356 0.92813 0.90100 0.83759 0.83657 0.72800 0.81305 0.89787 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.95 23.66 24.86 -169.99 -4.23 19.44 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.33 -8.37 7.11 56.52 0.40 -7.97 16 6 H -0.27 -6.70 5.24 56.52 0.30 -6.41 16 7 C -0.56 -14.61 8.58 -34.44 -0.30 -14.91 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.22 4.85 0.90 -90.39 -0.08 4.77 16 10 O -0.56 -12.19 8.38 -35.23 -0.30 -12.49 16 11 C -0.14 -2.55 6.40 -25.35 -0.16 -2.71 16 12 C 0.05 0.80 6.03 -2.09 -0.01 0.79 16 13 N -0.46 -8.32 5.38 -168.69 -0.91 -9.23 16 14 C 0.35 5.78 6.16 -155.29 -0.96 4.83 16 15 C -0.20 -2.59 9.42 -39.65 -0.37 -2.96 16 16 C 0.01 0.09 9.65 -39.27 -0.38 -0.29 16 17 C -0.23 -2.95 5.89 -104.83 -0.62 -3.56 16 18 C 0.54 6.35 8.27 34.46 0.28 6.64 16 19 O -0.52 -7.32 17.20 -19.28 -0.33 -7.65 16 20 O -0.51 -4.44 12.69 -40.65 -0.52 -4.96 16 21 C 0.20 2.68 10.79 -17.11 -0.18 2.50 16 22 N -0.52 -8.82 8.38 -12.13 -0.10 -8.92 16 23 C 0.05 1.16 4.71 -2.18 -0.01 1.15 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.37 6.94 8.99 45.56 0.41 7.35 16 26 H 0.08 1.46 7.57 -51.93 -0.39 1.06 16 27 H 0.07 1.09 7.98 -51.93 -0.41 0.67 16 28 H 0.05 0.84 7.97 -51.93 -0.41 0.43 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.15 1.50 7.73 -52.49 -0.41 1.09 16 32 H 0.41 1.64 9.11 45.56 0.42 2.05 16 33 H 0.17 1.94 7.61 -52.48 -0.40 1.54 16 34 H 0.08 1.96 6.48 -51.93 -0.34 1.63 16 35 H 0.09 2.01 6.85 -51.93 -0.36 1.65 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -33.15 295.19 -6.43 -39.58 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.39 Total: 7.08 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.89 Total: -1.78 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.24 Total: -43.69 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.14 Total: -25.09 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.23 Total: 19.44 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.15 -6.43 -39.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.446 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds