Wall clock time and date at job start Tue Mar 31 2020 00:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00027 * 2 1 4 4 H 1.48497 * 109.47255 * 267.09652 * 3 2 1 5 5 H 1.48500 * 109.47100 * 27.09204 * 3 2 1 6 6 H 1.48494 * 109.47398 * 147.09165 * 3 2 1 7 7 C 1.37869 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00114 * 353.97069 * 7 2 1 9 9 C 1.50704 * 120.00070 * 173.97159 * 7 2 1 10 10 O 1.42902 * 110.28601 * 327.06563 * 9 7 2 11 11 C 1.54260 * 110.32313 * 204.93739 * 9 7 2 12 12 C 1.54379 * 105.15098 * 240.94543 * 11 9 7 13 13 N 1.48716 * 104.51622 * 336.27495 * 12 11 9 14 14 C 1.38427 * 111.01786 * 158.96480 * 13 12 11 15 15 C 1.39416 * 119.53132 * 64.21134 * 14 13 12 16 16 C 1.36838 * 119.38177 * 179.77230 * 15 14 13 17 17 C 1.40409 * 118.49050 * 0.49382 * 16 15 14 18 18 C 1.47396 * 120.48447 * 179.72626 * 17 16 15 19 19 O 1.21517 * 119.99779 * 0.02562 * 18 17 16 20 20 O 1.34760 * 120.00047 * 180.02562 * 18 17 16 21 21 C 1.39626 * 119.03272 * 359.75218 * 17 16 15 22 22 N 1.31653 * 120.51645 * 359.97438 * 21 17 16 23 23 C 1.48556 * 104.29399 * 39.35775 * 13 12 11 24 24 H 0.97002 * 119.99926 * 0.02562 * 1 2 3 25 25 H 0.96706 * 114.00139 * 294.05746 * 10 9 7 26 26 H 1.08998 * 110.32776 * 359.89919 * 11 9 7 27 27 H 1.09005 * 110.32091 * 122.00238 * 11 9 7 28 28 H 1.09005 * 110.40820 * 94.97794 * 12 11 9 29 29 H 1.08994 * 110.41669 * 217.41913 * 12 11 9 30 30 H 1.07999 * 120.30924 * 0.02562 * 15 14 13 31 31 H 1.07995 * 120.75659 * 180.24997 * 16 15 14 32 32 H 0.96703 * 116.99575 * 180.02562 * 20 18 17 33 33 H 1.08009 * 119.73983 * 180.02562 * 21 17 16 34 34 H 1.09001 * 110.41437 * 201.79868 * 23 13 12 35 35 H 1.09005 * 110.51324 * 79.40076 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5581 2.0110 -1.3982 5 1 1.4172 2.6697 0.6376 6 1 3.5146 1.4588 0.7606 7 6 2.0045 -1.1940 0.0005 8 1 1.4691 -2.1266 0.0992 9 6 3.5053 -1.1976 -0.1365 10 8 3.9297 -0.1141 -0.9659 11 6 3.9865 -2.5411 -0.7223 12 6 4.9060 -3.1469 0.3597 13 7 5.3704 -1.9770 1.1518 14 6 5.8057 -2.3681 2.4064 15 6 6.9192 -3.1994 2.5191 16 6 7.3496 -3.5803 3.7609 17 6 6.6415 -3.1242 4.8843 18 6 7.0631 -3.5125 6.2423 19 8 8.0303 -4.2319 6.3958 20 8 6.3760 -3.0695 7.3136 21 6 5.5317 -2.2980 4.6963 22 7 5.1545 -1.9509 3.4837 23 6 4.1731 -1.1034 1.2522 24 1 -0.4850 0.8401 -0.0004 25 1 3.6432 -0.1877 -1.8866 26 1 3.1375 -3.1986 -0.9091 27 1 4.5449 -2.3741 -1.6435 28 1 4.3460 -3.8356 0.9924 29 1 5.7522 -3.6558 -0.1017 30 1 7.4397 -3.5362 1.6348 31 1 8.2120 -4.2204 3.8743 32 1 6.6906 -3.3505 8.1838 33 1 4.9789 -1.9403 5.5524 34 1 4.4689 -0.0757 1.4628 35 1 3.4968 -1.4695 2.0247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:10 Heat of formation + Delta-G solvation = -108.017711 kcal Electronic energy + Delta-G solvation = -21465.076649 eV Core-core repulsion = 18041.515303 eV Total energy + Delta-G solvation = -3423.561347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.07650 -40.98846 -39.68650 -37.14463 -36.98787 -34.43612 -33.80776 -33.04114 -30.52120 -29.99563 -26.93703 -25.45090 -24.48947 -23.23015 -21.92963 -21.26608 -19.56613 -19.32473 -18.70646 -18.08842 -17.36952 -17.16090 -16.73809 -16.54858 -15.85921 -15.65265 -15.33842 -15.21601 -14.70451 -14.46800 -14.25174 -14.02632 -13.77502 -13.60788 -13.18378 -13.08586 -12.64274 -12.59672 -12.41605 -12.06686 -11.89681 -11.78813 -11.18600 -11.15598 -10.95074 -10.64988 -10.56233 -10.29646 -9.35649 -8.34899 -6.47302 -0.59529 0.21915 1.41611 1.46498 1.51702 1.72497 2.03203 2.44340 2.50117 2.77465 2.99655 3.26336 3.57446 3.75021 3.79026 3.87502 3.96953 4.09206 4.28409 4.36058 4.59586 4.64032 4.69802 4.74570 4.94281 5.01679 5.05501 5.09331 5.25070 5.31394 5.39537 5.53380 5.68658 6.04116 6.07189 6.59779 6.81627 6.96941 7.03541 7.33128 8.78058 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.004637 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.261273 B = 6036.755477 C = 6561.677994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.028 3.972 3 Si 1.003 2.997 4 H -0.278 1.278 5 H -0.338 1.338 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.045 0.955 9 C 0.215 3.785 10 O -0.565 6.565 11 C -0.137 4.137 12 C 0.054 3.946 13 N -0.464 5.464 14 C 0.324 3.676 15 C -0.184 4.184 16 C 0.012 3.988 17 C -0.227 4.227 18 C 0.549 3.451 19 O -0.545 6.545 20 O -0.504 6.504 21 C 0.186 3.814 22 N -0.558 5.558 23 C 0.067 3.933 24 H 0.266 0.734 25 H 0.382 0.618 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.123 0.877 30 H 0.172 0.828 31 H 0.170 0.830 32 H 0.436 0.564 33 H 0.184 0.816 34 H 0.059 0.941 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.480 -8.049 7.459 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.172 4.172 3 Si 0.837 3.163 4 H -0.204 1.204 5 H -0.271 1.271 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.063 0.937 9 C 0.175 3.825 10 O -0.374 6.374 11 C -0.175 4.175 12 C -0.070 4.070 13 N -0.181 5.181 14 C 0.092 3.908 15 C -0.206 4.206 16 C -0.013 4.013 17 C -0.232 4.232 18 C 0.394 3.606 19 O -0.438 6.438 20 O -0.318 6.318 21 C 0.027 3.973 22 N -0.272 5.272 23 C -0.060 4.060 24 H 0.075 0.925 25 H 0.231 0.769 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.141 0.859 30 H 0.190 0.810 31 H 0.187 0.813 32 H 0.298 0.702 33 H 0.201 0.799 34 H 0.078 0.922 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.408 -7.041 7.216 18.413 hybrid contribution -0.322 -0.146 0.697 0.781 sum 15.086 -7.187 7.913 18.489 Atomic orbital electron populations 1.70078 1.08360 1.28371 1.50621 1.25810 0.95253 1.03424 0.92692 0.84809 0.76381 0.76657 0.78407 1.20412 1.27108 1.19642 1.21619 0.91364 0.93545 1.52076 0.93656 1.19855 0.90809 0.84484 0.87360 1.86106 1.78733 1.47947 1.24651 1.23000 0.98714 0.97009 0.98774 1.23243 0.99371 0.89949 0.94416 1.62367 1.31186 1.14806 1.09717 1.20763 0.91701 0.88909 0.89418 1.21495 0.97643 1.01437 1.00029 1.21500 0.96846 0.93173 0.89774 1.20050 1.02843 1.08536 0.91729 1.20321 0.79126 0.75693 0.85427 1.90881 1.28426 1.37066 1.87377 1.84535 1.57478 1.70718 1.19104 1.23314 0.91117 0.88754 0.94158 1.67893 1.31789 1.27724 0.99841 1.23165 0.88891 0.96341 0.97632 0.92510 0.76857 0.90899 0.88768 0.93265 0.85857 0.81006 0.81290 0.70195 0.79911 0.92243 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.28 13.96 21.44 0.30 -56.98 16 2 C 0.03 1.60 5.46 84.65 0.46 2.06 16 3 Si 1.00 49.63 24.86 68.60 1.71 51.33 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.34 -17.27 7.11 99.48 0.71 -16.57 16 6 H -0.27 -13.39 5.24 99.48 0.52 -12.87 16 7 C -0.55 -29.55 8.58 25.60 0.22 -29.33 16 8 H 0.05 2.69 7.84 -2.91 -0.02 2.67 16 9 C 0.22 9.36 0.90 -10.64 -0.01 9.35 16 10 O -0.57 -23.79 8.38 -148.98 -1.25 -25.04 16 11 C -0.14 -4.62 6.40 31.49 0.20 -4.42 16 12 C 0.05 1.58 6.03 86.42 0.52 2.10 16 13 N -0.46 -15.92 5.38 -687.61 -3.70 -19.62 16 14 C 0.32 10.09 6.16 133.26 0.82 10.92 16 15 C -0.18 -4.21 9.42 22.23 0.21 -4.00 16 16 C 0.01 0.26 9.65 22.47 0.22 0.48 16 17 C -0.23 -5.22 5.89 -20.00 -0.12 -5.34 16 18 C 0.55 11.47 8.27 70.23 0.58 12.05 16 19 O -0.55 -13.74 17.20 19.78 0.34 -13.40 16 20 O -0.50 -7.38 12.69 -56.71 -0.72 -8.10 16 21 C 0.19 4.90 10.79 85.05 0.92 5.82 16 22 N -0.56 -18.68 8.38 -192.28 -1.61 -20.29 16 23 C 0.07 2.88 4.71 86.45 0.41 3.29 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.38 13.64 8.99 -74.05 -0.67 12.97 16 26 H 0.07 2.57 7.57 -2.39 -0.02 2.55 16 27 H 0.09 2.70 7.98 -2.38 -0.02 2.68 16 28 H 0.05 1.46 7.97 -2.38 -0.02 1.44 16 29 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 31 H 0.17 2.78 7.73 -2.91 -0.02 2.76 16 32 H 0.44 2.14 9.11 -74.06 -0.67 1.46 16 33 H 0.18 4.03 7.61 -2.91 -0.02 4.01 16 34 H 0.06 2.82 6.48 -2.39 -0.02 2.80 16 35 H 0.06 3.01 6.85 -2.38 -0.02 2.99 16 Total: -1.00 -73.46 295.19 -0.88 -74.34 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.37 Total: 14.80 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 4.43 Total: 2.96 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -5.01 Total: -96.89 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.63 Total: -46.54 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 1.71 Total: 51.33 kcal Total: -73.46 -0.88 -74.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.682 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds