Wall clock time and date at job start Tue Mar 31 2020 00:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00067 * 2 1 4 4 H 1.48498 * 109.46910 * 269.99479 * 3 2 1 5 5 H 1.48500 * 109.46930 * 29.99801 * 3 2 1 6 6 H 1.48497 * 109.46940 * 149.99238 * 3 2 1 7 7 C 1.37875 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00239 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00007 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47519 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47359 * 180.02562 * 11 10 9 13 13 O 1.21270 * 120.00373 * 359.97438 * 12 11 10 14 14 N 1.34785 * 119.99817 * 179.97438 * 12 11 10 15 15 C 1.39388 * 119.99486 * 185.08511 * 14 12 11 16 16 C 1.39424 * 119.62119 * 174.91195 * 15 14 12 17 17 C 1.38309 * 119.30094 * 180.02562 * 16 15 14 18 18 C 1.38792 * 118.56921 * 359.74829 * 17 16 15 19 19 C 1.39183 * 119.20757 * 0.47542 * 18 17 16 20 20 C 1.48054 * 119.69039 * 179.78880 * 19 18 17 21 21 O 1.21433 * 119.99574 * 359.72833 * 20 19 18 22 22 O 1.34684 * 120.00365 * 179.72260 * 20 19 18 23 23 N 1.31986 * 119.63057 * 354.89021 * 15 14 12 24 24 H 0.97000 * 120.00437 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47486 * 59.99971 * 9 7 2 26 26 H 1.09004 * 109.47133 * 299.99762 * 9 7 2 27 27 H 1.08999 * 109.47824 * 59.99690 * 10 9 7 28 28 H 1.09006 * 109.47360 * 299.99644 * 10 9 7 29 29 H 1.08996 * 109.47274 * 59.99644 * 11 10 9 30 30 H 1.09004 * 109.47061 * 299.99608 * 11 10 9 31 31 H 0.96995 * 120.00273 * 5.09210 * 14 12 11 32 32 H 1.07995 * 120.35120 * 359.97438 * 16 15 14 33 33 H 1.07999 * 120.71622 * 180.02562 * 17 16 15 34 34 H 1.08004 * 120.39574 * 180.26771 * 18 17 16 35 35 H 0.96692 * 116.99943 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6366 0.0009 12 6 6.0538 -4.0574 0.0002 13 8 5.2658 -4.9792 0.0002 14 7 7.3789 -4.3036 -0.0005 15 6 7.8443 -5.6131 -0.1082 16 6 9.2139 -5.8511 -0.2154 17 6 9.6683 -7.1530 -0.3225 18 6 8.7385 -8.1834 -0.3140 19 6 7.3851 -7.8761 -0.2088 20 6 6.3837 -8.9666 -0.2034 21 8 6.7444 -10.1225 -0.2956 22 8 5.0728 -8.6767 -0.0963 23 7 6.9835 -6.6137 -0.1071 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8751 -0.6804 -0.8889 27 1 3.6585 -3.1503 -0.8892 28 1 3.6578 -3.1506 0.8908 29 1 5.9149 -2.1228 0.8909 30 1 5.9148 -2.1228 -0.8891 31 1 8.0087 -3.5697 0.0740 32 1 9.9125 -5.0276 -0.2157 33 1 10.7242 -7.3636 -0.4063 34 1 9.0611 -9.2112 -0.3915 35 1 4.4569 -9.4221 -0.0978 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064593.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:38 Heat of formation + Delta-G solvation = -113.805275 kcal Electronic energy + Delta-G solvation = -20355.647945 eV Core-core repulsion = 16931.835630 eV Total energy + Delta-G solvation = -3423.812314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07855 -41.11269 -39.93620 -37.26083 -36.28819 -35.87143 -34.13835 -33.64243 -31.71690 -29.99465 -26.72653 -26.00905 -24.21931 -22.85358 -22.08855 -21.25042 -19.65569 -19.04793 -18.80911 -17.99329 -17.52808 -17.05501 -16.98664 -16.74883 -16.33460 -16.17073 -15.52922 -15.03740 -14.75403 -14.57235 -14.49864 -14.12625 -13.80702 -13.22857 -13.17885 -12.70477 -12.69051 -12.47368 -12.18821 -11.91190 -11.77070 -11.71368 -11.47247 -11.32015 -11.21369 -10.97178 -10.73596 -10.16876 -9.44365 -8.26253 -6.32211 -0.58130 0.20148 1.24777 1.40010 1.44139 1.56090 1.74205 1.78310 1.95288 2.40858 2.80582 3.09019 3.17147 3.76660 3.85268 4.02117 4.09855 4.13270 4.27801 4.29696 4.44205 4.77350 4.92580 4.93963 4.98160 5.05219 5.06989 5.19574 5.34739 5.57317 5.62427 5.66606 5.69783 6.13095 6.32693 6.74449 6.77155 6.96473 7.31947 7.34094 8.91706 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.003275 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.848396 B = 8547.971015 C = 9500.335845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.006 4.006 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.232 1.232 7 C -0.541 4.541 8 H 0.016 0.984 9 C -0.008 4.008 10 C -0.083 4.083 11 C -0.125 4.125 12 C 0.498 3.502 13 O -0.518 6.518 14 N -0.648 5.648 15 C 0.332 3.668 16 C -0.148 4.148 17 C -0.044 4.044 18 C -0.131 4.131 19 C 0.079 3.921 20 C 0.542 3.458 21 O -0.530 6.530 22 O -0.497 6.497 23 N -0.482 5.482 24 H 0.266 0.734 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.442 0.558 32 H 0.194 0.806 33 H 0.199 0.801 34 H 0.162 0.838 35 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.942 -10.494 -0.464 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.201 4.201 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.154 1.154 7 C -0.579 4.579 8 H 0.035 0.965 9 C -0.045 4.045 10 C -0.121 4.121 11 C -0.164 4.164 12 C 0.285 3.715 13 O -0.389 6.389 14 N -0.298 5.298 15 C 0.097 3.903 16 C -0.171 4.171 17 C -0.070 4.070 18 C -0.153 4.153 19 C -0.056 4.056 20 C 0.386 3.614 21 O -0.420 6.420 22 O -0.309 6.309 23 N -0.200 5.200 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.283 0.717 32 H 0.211 0.789 33 H 0.216 0.784 34 H 0.180 0.820 35 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 27.591 -10.808 -0.417 29.635 hybrid contribution -0.467 -0.069 -0.033 0.474 sum 27.124 -10.877 -0.450 29.227 Atomic orbital electron populations 1.70116 1.08826 1.28297 1.52789 1.26248 0.95757 1.04297 0.93844 0.85460 0.79750 0.76777 0.79396 1.18898 1.21415 1.15436 1.21587 0.92919 0.92741 1.50666 0.96539 1.19537 0.93265 0.94212 0.97516 1.21058 0.93648 0.97217 1.00177 1.21741 0.96086 0.91420 1.07177 1.21634 0.81959 0.92793 0.75085 1.90853 1.55708 1.47464 1.44903 1.43624 1.08419 1.05959 1.71835 1.18986 0.90148 0.85455 0.95661 1.22334 0.92770 1.00824 1.01146 1.21964 1.02155 0.89951 0.92885 1.22296 0.90671 1.03425 0.98943 1.19972 0.91858 0.89083 1.04735 1.20845 0.82233 0.87103 0.71257 1.90854 1.81808 1.21536 1.47829 1.84807 1.17463 1.45047 1.83585 1.67431 1.39654 0.99338 1.13613 0.92541 0.94828 0.95024 0.94774 0.94691 0.85683 0.85719 0.71660 0.78883 0.78378 0.82020 0.71090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.31 13.96 21.45 0.30 -62.01 16 2 C -0.01 -0.35 5.47 84.65 0.46 0.11 16 3 Si 0.96 43.47 27.47 68.60 1.88 45.35 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.23 -9.13 6.54 99.48 0.65 -8.47 16 7 C -0.54 -32.58 9.66 25.60 0.25 -32.33 16 8 H 0.02 1.12 7.99 -2.91 -0.02 1.10 16 9 C -0.01 -0.37 4.04 29.85 0.12 -0.24 16 10 C -0.08 -3.39 4.44 30.59 0.14 -3.26 16 11 C -0.12 -3.28 5.70 29.85 0.17 -3.11 16 12 C 0.50 14.54 7.79 87.65 0.68 15.22 16 13 O -0.52 -21.45 14.24 -3.00 -0.04 -21.49 16 14 N -0.65 -12.20 5.39 -308.41 -1.66 -13.86 16 15 C 0.33 7.04 7.42 133.12 0.99 8.03 16 16 C -0.15 -1.46 9.94 22.57 0.22 -1.24 16 17 C -0.04 -0.37 10.16 22.42 0.23 -0.15 16 18 C -0.13 -2.14 9.63 22.63 0.22 -1.92 16 19 C 0.08 2.06 6.74 41.82 0.28 2.35 16 20 C 0.54 15.20 8.32 70.43 0.59 15.78 16 21 O -0.53 -15.25 17.10 20.05 0.34 -14.91 16 22 O -0.50 -14.00 13.24 -55.93 -0.74 -14.74 16 23 N -0.48 -14.55 7.64 -182.19 -1.39 -15.94 16 24 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 25 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 26 H 0.03 1.33 7.57 -2.38 -0.02 1.31 16 27 H 0.03 1.55 8.10 -2.39 -0.02 1.53 16 28 H 0.03 1.58 8.10 -2.38 -0.02 1.56 16 29 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.44 3.41 8.70 -92.71 -0.81 2.60 16 32 H 0.19 0.00 8.06 -2.91 -0.02 -0.02 16 33 H 0.20 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.16 2.16 7.63 -2.91 -0.02 2.14 16 35 H 0.43 7.25 9.11 -74.06 -0.67 6.58 16 Total: -1.00 -94.12 314.23 2.64 -91.48 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -0.39 Total: 6.88 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 4.35 Total: -0.75 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -2.75 Total: -91.82 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.44 Total: -51.14 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Total: -94.12 2.64 -91.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064593.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.324 kcal (2) G-P(sol) polarization free energy of solvation -94.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds