Wall clock time and date at job start Tue Mar 31 2020 00:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48504 * 109.47259 * 239.99372 * 3 2 1 5 5 H 1.48496 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47535 * 119.99447 * 3 2 1 7 7 C 1.37879 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00269 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46988 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47240 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99769 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00390 * 179.97438 * 12 11 10 15 15 C 1.39422 * 120.00346 * 185.26978 * 14 12 11 16 16 C 1.39378 * 120.39578 * 32.89852 * 15 14 12 17 17 C 1.38274 * 118.43683 * 179.97438 * 16 15 14 18 18 C 1.39524 * 119.14501 * 359.97438 * 17 16 15 19 19 C 1.47802 * 119.64655 * 179.97438 * 18 17 16 20 20 O 1.21466 * 119.99652 * 0.02562 * 19 18 17 21 21 O 1.34719 * 119.99830 * 179.97438 * 19 18 17 22 22 N 1.32856 * 120.71016 * 0.02562 * 18 17 16 23 23 C 1.31322 * 121.70643 * 0.02562 * 22 18 17 24 24 H 0.97000 * 119.99783 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47096 * 59.99072 * 9 7 2 26 26 H 1.09004 * 109.46503 * 299.99937 * 9 7 2 27 27 H 1.08993 * 109.47377 * 59.99635 * 10 9 7 28 28 H 1.09002 * 109.47001 * 299.99378 * 10 9 7 29 29 H 1.08993 * 109.47467 * 59.99558 * 11 10 9 30 30 H 1.09002 * 109.46633 * 299.99471 * 11 10 9 31 31 H 0.97000 * 119.99565 * 5.27074 * 14 12 11 32 32 H 1.08000 * 120.78111 * 359.95014 * 16 15 14 33 33 H 1.08002 * 120.42224 * 179.71785 * 17 16 15 34 34 H 0.96701 * 117.00036 * 179.97438 * 21 19 18 35 35 H 1.08005 * 119.60653 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4593 -6.1325 -0.0007 13 8 3.6517 -5.9109 -0.0002 14 7 2.0101 -7.4032 -0.0009 15 6 2.9113 -8.4613 0.1095 16 6 4.0761 -8.3200 0.8617 17 6 4.9413 -9.3955 0.9441 18 6 4.6209 -10.5780 0.2764 19 6 5.5379 -11.7343 0.3565 20 8 6.5639 -11.6522 1.0015 21 8 5.2353 -12.8797 -0.2850 22 7 3.5008 -10.6754 -0.4314 23 6 2.6581 -9.6732 -0.5313 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8904 27 1 2.8718 -3.6043 0.8904 28 1 2.8717 -3.6044 -0.8895 29 1 0.8537 -5.0446 -0.8902 30 1 0.8533 -5.0450 0.8897 31 1 1.0598 -7.5816 -0.0777 32 1 4.2980 -7.3922 1.3680 33 1 5.8552 -9.3198 1.5145 34 1 5.8659 -13.6083 -0.2036 35 1 1.7572 -9.7898 -1.1155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:41 Heat of formation + Delta-G solvation = -102.718991 kcal Electronic energy + Delta-G solvation = -19902.190850 eV Core-core repulsion = 16478.859273 eV Total energy + Delta-G solvation = -3423.331577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34228 -40.33285 -39.17368 -36.42800 -35.48261 -34.36413 -32.67108 -32.17233 -30.83191 -28.07810 -25.61167 -24.15733 -23.80065 -22.11627 -20.86895 -20.06213 -18.78519 -18.05965 -17.75932 -17.15302 -16.44296 -16.17072 -16.03297 -15.67673 -14.95494 -14.52280 -14.28826 -14.12885 -13.86669 -13.62029 -13.32482 -12.89090 -12.37449 -11.95416 -11.89277 -11.58603 -11.26429 -11.17378 -10.85476 -10.76814 -10.62932 -10.35722 -10.15943 -9.79876 -9.77235 -9.40069 -9.13490 -8.71608 -8.38368 -6.04129 -4.06080 0.10776 0.86982 1.99401 2.52150 2.53621 2.75875 3.32429 3.36386 3.39827 3.45792 3.92251 4.36199 4.42767 4.45407 4.61597 4.83903 4.94892 5.22532 5.32112 5.45853 5.48315 5.51406 5.74236 5.81477 6.04217 6.07409 6.31638 6.55933 6.76176 7.01883 7.02259 7.24819 7.61113 7.63055 7.72659 7.92472 7.95819 8.38354 9.00529 9.58382 11.07225 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049137 B = 0.002521 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.702953 B =11102.136679 C =11551.986063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.137 4.137 12 C 0.513 3.487 13 O -0.509 6.509 14 N -0.676 5.676 15 C 0.147 3.853 16 C -0.097 4.097 17 C -0.075 4.075 18 C 0.051 3.949 19 C 0.548 3.452 20 O -0.511 6.511 21 O -0.494 6.494 22 N -0.412 5.412 23 C 0.068 3.932 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.418 0.582 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.412 0.588 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 -23.310 0.486 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.177 4.177 12 C 0.303 3.697 13 O -0.382 6.382 14 N -0.322 5.322 15 C 0.048 3.952 16 C -0.124 4.124 17 C -0.095 4.095 18 C -0.086 4.086 19 C 0.390 3.610 20 O -0.398 6.398 21 O -0.304 6.304 22 N -0.122 5.122 23 C -0.097 4.097 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.255 0.745 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.270 0.730 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.873 -23.388 0.225 23.707 hybrid contribution 0.460 1.147 0.373 1.290 sum 4.333 -22.241 0.598 22.667 Atomic orbital electron populations 1.69942 1.06042 1.26772 1.50878 1.25015 0.94871 0.99295 0.95265 0.86642 0.79579 0.82996 0.78715 1.20205 1.21296 1.20202 1.21205 0.93142 0.90960 1.50617 0.92614 1.19123 0.93898 0.91351 0.97243 1.21497 0.98789 0.91294 1.01915 1.21923 0.97923 0.93303 1.04503 1.21730 0.90918 0.83179 0.73845 1.90718 1.17259 1.84175 1.46024 1.43824 1.10345 1.04889 1.73098 1.19222 0.92350 0.89530 0.94134 1.21694 0.93508 1.00024 0.97216 1.21997 1.00088 0.90759 0.96707 1.19806 0.94159 0.92504 1.02088 1.20375 0.83301 0.82084 0.75199 1.90921 1.25737 1.83190 1.39999 1.84692 1.53669 1.23436 1.68627 1.67553 1.01326 1.30086 1.13254 1.22705 1.00045 0.88064 0.98846 0.92932 0.96511 0.96509 0.92496 0.92491 0.88622 0.88515 0.74472 0.82307 0.82857 0.73017 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -1.89 4.44 -26.73 -0.12 -2.01 16 11 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 12 C 0.51 6.77 7.59 -10.99 -0.08 6.69 16 13 O -0.51 -8.61 13.66 5.56 0.08 -8.53 16 14 N -0.68 -6.28 5.33 -9.74 -0.05 -6.33 16 15 C 0.15 1.51 6.31 -83.55 -0.53 0.98 16 16 C -0.10 -1.10 8.75 -39.14 -0.34 -1.44 16 17 C -0.07 -0.81 9.62 -39.09 -0.38 -1.18 16 18 C 0.05 0.58 6.74 -83.03 -0.56 0.02 16 19 C 0.55 5.97 8.31 34.64 0.29 6.26 16 20 O -0.51 -6.48 17.10 -19.24 -0.33 -6.81 16 21 O -0.49 -4.15 13.24 -40.54 -0.54 -4.69 16 22 N -0.41 -4.60 10.10 -9.65 -0.10 -4.70 16 23 C 0.07 0.63 11.12 -17.33 -0.19 0.44 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 28 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.42 2.33 8.82 -40.82 -0.36 1.97 16 32 H 0.16 1.94 6.47 -52.49 -0.34 1.60 16 33 H 0.15 1.48 7.63 -52.49 -0.40 1.08 16 34 H 0.41 1.33 9.11 45.56 0.42 1.74 16 35 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -35.18 316.61 -6.25 -41.43 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.18 Total: -0.77 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.62 Total: -5.26 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.59 Total: -36.63 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.79 Total: -20.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.18 -6.25 -41.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.284 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds