Wall clock time and date at job start Tue Mar 31 2020 00:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48504 * 109.47259 * 239.99372 * 3 2 1 5 5 H 1.48496 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47535 * 119.99447 * 3 2 1 7 7 C 1.37879 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00269 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46988 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47240 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99769 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00390 * 179.97438 * 12 11 10 15 15 C 1.39422 * 120.00346 * 185.26978 * 14 12 11 16 16 C 1.39378 * 120.39578 * 32.89852 * 15 14 12 17 17 C 1.38274 * 118.43683 * 179.97438 * 16 15 14 18 18 C 1.39524 * 119.14501 * 359.97438 * 17 16 15 19 19 C 1.47802 * 119.64655 * 179.97438 * 18 17 16 20 20 O 1.21466 * 119.99652 * 0.02562 * 19 18 17 21 21 O 1.34719 * 119.99830 * 179.97438 * 19 18 17 22 22 N 1.32856 * 120.71016 * 0.02562 * 18 17 16 23 23 C 1.31322 * 121.70643 * 0.02562 * 22 18 17 24 24 H 0.97000 * 119.99783 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47096 * 59.99072 * 9 7 2 26 26 H 1.09004 * 109.46503 * 299.99937 * 9 7 2 27 27 H 1.08993 * 109.47377 * 59.99635 * 10 9 7 28 28 H 1.09002 * 109.47001 * 299.99378 * 10 9 7 29 29 H 1.08993 * 109.47467 * 59.99558 * 11 10 9 30 30 H 1.09002 * 109.46633 * 299.99471 * 11 10 9 31 31 H 0.97000 * 119.99565 * 5.27074 * 14 12 11 32 32 H 1.08000 * 120.78111 * 359.95014 * 16 15 14 33 33 H 1.08002 * 120.42224 * 179.71785 * 17 16 15 34 34 H 0.96701 * 117.00036 * 179.97438 * 21 19 18 35 35 H 1.08005 * 119.60653 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4593 -6.1325 -0.0007 13 8 3.6517 -5.9109 -0.0002 14 7 2.0101 -7.4032 -0.0009 15 6 2.9113 -8.4613 0.1095 16 6 4.0761 -8.3200 0.8617 17 6 4.9413 -9.3955 0.9441 18 6 4.6209 -10.5780 0.2764 19 6 5.5379 -11.7343 0.3565 20 8 6.5639 -11.6522 1.0015 21 8 5.2353 -12.8797 -0.2850 22 7 3.5008 -10.6754 -0.4314 23 6 2.6581 -9.6732 -0.5313 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8904 27 1 2.8718 -3.6043 0.8904 28 1 2.8717 -3.6044 -0.8895 29 1 0.8537 -5.0446 -0.8902 30 1 0.8533 -5.0450 0.8897 31 1 1.0598 -7.5816 -0.0777 32 1 4.2980 -7.3922 1.3680 33 1 5.8552 -9.3198 1.5145 34 1 5.8659 -13.6083 -0.2036 35 1 1.7572 -9.7898 -1.1155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:40 Heat of formation + Delta-G solvation = -128.425985 kcal Electronic energy + Delta-G solvation = -19903.305589 eV Core-core repulsion = 16478.859273 eV Total energy + Delta-G solvation = -3424.446316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.20153 -41.22845 -40.09167 -37.19431 -36.52229 -36.03173 -34.10723 -33.40700 -31.81384 -29.67152 -26.76459 -25.43070 -24.89254 -23.11516 -22.15729 -21.36423 -19.62844 -18.93948 -18.65297 -18.38115 -17.99434 -17.26302 -16.86874 -16.75472 -16.47758 -15.78416 -15.41916 -15.18751 -14.77768 -14.68451 -14.35588 -14.21487 -13.82065 -13.64178 -13.13743 -12.66602 -12.61660 -12.51737 -12.44239 -12.19370 -12.04104 -11.53660 -11.51666 -11.33150 -11.16681 -10.97752 -10.58316 -10.52693 -9.55417 -8.19617 -6.28806 -0.73621 0.06625 1.12733 1.40660 1.42410 1.50489 1.56282 1.74062 1.94058 2.42046 2.64742 3.13916 3.18811 3.52310 3.65249 3.77393 3.95550 4.10497 4.23407 4.28373 4.50429 4.71271 4.78941 4.92165 4.98009 5.00304 5.11798 5.22321 5.40886 5.49130 5.56151 5.78088 5.89174 6.22707 6.29842 6.50154 6.87143 6.94091 6.98699 7.39805 8.91387 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049137 B = 0.002521 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.702953 B =11102.136679 C =11551.986063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.085 4.085 11 C -0.127 4.127 12 C 0.521 3.479 13 O -0.552 6.552 14 N -0.652 5.652 15 C 0.142 3.858 16 C -0.108 4.108 17 C -0.077 4.077 18 C 0.038 3.962 19 C 0.552 3.448 20 O -0.536 6.536 21 O -0.491 6.491 22 N -0.425 5.425 23 C 0.082 3.918 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.439 0.561 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.433 0.567 35 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 -24.316 -0.009 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.124 4.124 11 C -0.167 4.167 12 C 0.311 3.689 13 O -0.428 6.428 14 N -0.299 5.299 15 C 0.042 3.958 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.097 4.097 19 C 0.396 3.604 20 O -0.426 6.426 21 O -0.303 6.303 22 N -0.135 5.135 23 C -0.082 4.082 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.280 0.720 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.295 0.705 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.215 -24.460 -0.276 24.672 hybrid contribution 0.626 1.389 0.508 1.606 sum 3.841 -23.072 0.232 23.391 Atomic orbital electron populations 1.70042 1.07388 1.27789 1.51589 1.25860 0.95795 1.02918 0.94839 0.85617 0.78432 0.78723 0.78996 1.19545 1.20539 1.19515 1.21681 0.93339 0.92906 1.50628 0.93096 1.19022 0.94243 0.92216 0.95746 1.21193 0.97713 0.92895 1.00568 1.21724 0.97594 0.90499 1.06838 1.21449 0.89908 0.84161 0.73370 1.90721 1.18865 1.84928 1.48298 1.43439 1.11397 1.03364 1.71732 1.19296 0.92142 0.90048 0.94295 1.21682 0.94407 0.99680 0.97849 1.22030 1.00255 0.90685 0.96837 1.19964 0.94581 0.92819 1.02339 1.20316 0.82745 0.82541 0.74822 1.90910 1.26723 1.83721 1.41216 1.84642 1.54433 1.23485 1.67766 1.67618 1.01552 1.30771 1.13596 1.23246 1.00472 0.86764 0.97765 0.92705 0.97857 0.97855 0.93815 0.93936 0.86253 0.86267 0.71953 0.83610 0.82488 0.70487 0.77642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.09 -3.35 4.44 30.59 0.14 -3.21 16 11 C -0.13 -3.27 5.70 29.85 0.17 -3.10 16 12 C 0.52 12.92 7.59 87.66 0.66 13.58 16 13 O -0.55 -18.55 13.66 -3.03 -0.04 -18.59 16 14 N -0.65 -10.40 5.33 -303.11 -1.62 -12.02 16 15 C 0.14 2.62 6.31 38.49 0.24 2.86 16 16 C -0.11 -2.41 8.75 22.55 0.20 -2.21 16 17 C -0.08 -1.66 9.62 22.59 0.22 -1.44 16 18 C 0.04 0.84 6.74 41.83 0.28 1.12 16 19 C 0.55 11.57 8.31 70.35 0.58 12.16 16 20 O -0.54 -13.44 17.10 19.95 0.34 -13.10 16 21 O -0.49 -7.45 13.24 -56.29 -0.75 -8.20 16 22 N -0.42 -8.64 10.10 -184.46 -1.86 -10.50 16 23 C 0.08 1.29 11.12 85.05 0.95 2.23 16 24 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 25 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 27 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 29 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.44 3.22 8.82 -92.71 -0.82 2.40 16 32 H 0.15 3.65 6.47 -2.91 -0.02 3.63 16 33 H 0.16 3.12 7.63 -2.91 -0.02 3.09 16 34 H 0.43 2.04 9.11 -74.06 -0.67 1.37 16 35 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -76.64 316.61 2.33 -74.31 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -0.35 Total: 3.09 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 4.28 Total: -6.63 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -3.19 Total: -76.99 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.45 Total: -39.89 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -76.64 2.33 -74.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.115 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds