Wall clock time and date at job start Tue Mar 31 2020 00:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00416 * 2 1 4 4 H 1.48496 * 109.47413 * 270.00487 * 3 2 1 5 5 H 1.48507 * 109.47003 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.47493 * 149.99870 * 3 2 1 7 7 C 1.37881 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99457 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46858 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47014 * 180.02562 * 11 10 9 13 13 O 1.21290 * 120.00087 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00144 * 179.97438 * 12 11 10 15 15 C 1.39984 * 120.00291 * 185.26165 * 14 12 11 16 16 C 1.38990 * 120.42001 * 212.69492 * 15 14 12 17 17 N 1.31856 * 120.99070 * 180.02562 * 16 15 14 18 18 C 1.31686 * 121.96858 * 0.02562 * 17 16 15 19 19 C 1.39594 * 120.71036 * 359.97438 * 18 17 16 20 20 C 1.47732 * 120.52600 * 180.02562 * 19 18 17 21 21 O 1.21473 * 120.00069 * 180.02562 * 20 19 18 22 22 O 1.34716 * 119.99953 * 0.02562 * 20 19 18 23 23 C 1.38980 * 120.41459 * 32.70221 * 15 14 12 24 24 H 0.97002 * 119.99845 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47156 * 60.00444 * 9 7 2 26 26 H 1.08996 * 109.47924 * 299.99958 * 9 7 2 27 27 H 1.08998 * 109.47019 * 60.00041 * 10 9 7 28 28 H 1.09002 * 109.47368 * 299.99933 * 10 9 7 29 29 H 1.08998 * 109.47269 * 60.00034 * 11 10 9 30 30 H 1.08994 * 109.46997 * 300.00360 * 11 10 9 31 31 H 0.96998 * 119.99660 * 5.27209 * 14 12 11 32 32 H 1.08002 * 119.50472 * 0.02562 * 16 15 14 33 33 H 1.07994 * 119.64447 * 179.97438 * 18 17 16 34 34 H 0.96704 * 116.99208 * 179.97438 * 22 20 19 35 35 H 1.07995 * 120.88648 * 0.24624 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 6 2.4594 -6.1325 -0.0031 13 8 3.6519 -5.9109 -0.0026 14 7 2.0101 -7.4033 -0.0032 15 6 2.9149 -8.4656 0.1074 16 6 2.6609 -9.6755 -0.5279 17 7 3.5051 -10.6837 -0.4309 18 6 4.6191 -10.5956 0.2658 19 6 4.9503 -9.4160 0.9347 20 6 6.2014 -9.3215 1.7146 21 8 6.4800 -8.2905 2.2933 22 8 7.0334 -10.3788 1.7839 23 6 4.0786 -8.3239 0.8539 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8725 -3.6048 0.8877 28 1 2.8712 -3.6040 -0.8923 29 1 0.8531 -5.0442 -0.8922 30 1 0.8538 -5.0454 0.8877 31 1 1.0598 -7.5816 -0.0801 32 1 1.7584 -9.7915 -1.1097 33 1 5.2836 -11.4452 0.3202 34 1 7.8400 -10.2691 2.3059 35 1 4.3018 -7.3976 1.3622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:43 Heat of formation + Delta-G solvation = -104.233486 kcal Electronic energy + Delta-G solvation = -20176.702863 eV Core-core repulsion = 16753.305613 eV Total energy + Delta-G solvation = -3423.397250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31791 -40.21877 -39.20692 -36.42978 -35.38616 -34.30764 -32.79325 -32.16591 -30.59194 -27.88457 -25.70832 -24.63540 -23.37425 -21.91990 -20.88782 -19.96978 -18.64965 -18.20696 -17.31018 -17.17420 -16.42245 -16.21855 -16.02513 -15.84569 -15.35751 -14.47177 -14.21979 -13.95704 -13.79169 -13.58876 -13.27534 -12.87169 -12.34530 -11.92664 -11.91260 -11.54114 -11.26766 -11.13392 -10.84602 -10.71094 -10.57266 -10.27644 -10.15244 -9.75401 -9.72363 -9.35505 -9.08488 -8.65992 -8.35570 -6.01307 -4.02885 0.11758 0.80375 2.15714 2.48839 2.60318 2.85463 3.33083 3.39087 3.44023 3.44194 4.02527 4.35440 4.46372 4.54367 4.57722 4.62407 4.96494 5.09544 5.35073 5.51335 5.54297 5.60648 5.74934 5.81028 6.09332 6.10915 6.35541 6.61577 6.81828 7.07088 7.11850 7.40966 7.55057 7.65206 7.76785 7.98453 8.03430 8.42142 9.04071 9.61495 11.10167 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027147 B = 0.003036 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.172067 B = 9221.544527 C =10112.633536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.136 4.136 12 C 0.512 3.488 13 O -0.511 6.511 14 N -0.677 5.677 15 C 0.099 3.901 16 C 0.105 3.895 17 N -0.470 5.470 18 C 0.134 3.866 19 C -0.160 4.160 20 C 0.532 3.468 21 O -0.500 6.500 22 O -0.511 6.511 23 C -0.020 4.020 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.417 0.583 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.417 0.583 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.225 -24.141 1.302 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.176 4.176 12 C 0.301 3.699 13 O -0.384 6.384 14 N -0.325 5.325 15 C 0.002 3.998 16 C -0.054 4.054 17 N -0.178 5.178 18 C -0.025 4.025 19 C -0.164 4.164 20 C 0.374 3.626 21 O -0.388 6.388 22 O -0.324 6.324 23 C -0.048 4.048 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.254 0.746 32 H 0.184 0.816 33 H 0.190 0.810 34 H 0.277 0.723 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.426 -24.296 0.815 24.907 hybrid contribution 0.632 1.737 0.703 1.977 sum 6.059 -22.559 1.518 23.407 Atomic orbital electron populations 1.69956 1.06046 1.26619 1.51089 1.25015 0.94862 0.99290 0.95299 0.86586 0.79922 0.83350 0.78133 1.20652 1.21234 1.19802 1.21257 0.93211 0.90970 1.50341 0.92546 1.19126 0.93896 0.91369 0.97212 1.21501 0.98782 0.91318 1.01946 1.21901 0.97902 0.93351 1.04398 1.21711 0.90911 0.83249 0.74002 1.90736 1.17241 1.84168 1.46261 1.43808 1.10035 1.04617 1.73992 1.18722 0.93129 0.90210 0.97775 1.22946 0.99198 0.87974 0.95267 1.67748 1.03270 1.29976 1.16821 1.23112 0.92963 0.95962 0.90471 1.19947 0.95145 0.96901 1.04372 1.20547 0.83212 0.80643 0.78187 1.90961 1.74257 1.30399 1.43164 1.84517 1.35825 1.41890 1.70159 1.21820 0.91386 0.98733 0.92850 0.93019 0.96530 0.96509 0.92480 0.92514 0.88699 0.88614 0.74623 0.81597 0.81036 0.72343 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.00 4.44 -26.73 -0.12 -2.11 16 11 C -0.14 -2.00 5.70 -27.88 -0.16 -2.15 16 12 C 0.51 7.34 7.59 -10.99 -0.08 7.25 16 13 O -0.51 -9.44 13.67 5.55 0.08 -9.36 16 14 N -0.68 -6.88 5.35 -9.79 -0.05 -6.93 16 15 C 0.10 1.08 6.31 -83.58 -0.53 0.56 16 16 C 0.11 0.95 11.11 -17.26 -0.19 0.76 16 17 N -0.47 -4.71 10.34 -12.75 -0.13 -4.84 16 18 C 0.13 1.27 10.78 -17.11 -0.18 1.08 16 19 C -0.16 -1.79 5.89 -104.86 -0.62 -2.41 16 20 C 0.53 5.92 8.28 34.61 0.29 6.21 16 21 O -0.50 -7.43 17.20 -19.24 -0.33 -7.76 16 22 O -0.51 -3.60 12.70 -40.54 -0.51 -4.11 16 23 C -0.02 -0.26 8.30 -38.66 -0.32 -0.58 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 28 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.42 2.60 8.82 -40.82 -0.36 2.24 16 32 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.17 1.19 7.62 -52.49 -0.40 0.79 16 34 H 0.42 1.13 9.11 45.56 0.42 1.54 16 35 H 0.16 2.51 6.16 -52.49 -0.32 2.19 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -36.34 315.94 -6.11 -42.45 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.16 Total: -0.41 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.47 Total: -4.62 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.55 Total: -37.80 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.77 Total: -21.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.34 -6.11 -42.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.788 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds