Wall clock time and date at job start Tue Mar 31 2020 00:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00416 * 2 1 4 4 H 1.48496 * 109.47413 * 270.00487 * 3 2 1 5 5 H 1.48507 * 109.47003 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.47493 * 149.99870 * 3 2 1 7 7 C 1.37881 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99457 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46858 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47014 * 180.02562 * 11 10 9 13 13 O 1.21290 * 120.00087 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00144 * 179.97438 * 12 11 10 15 15 C 1.39984 * 120.00291 * 185.26165 * 14 12 11 16 16 C 1.38990 * 120.42001 * 212.69492 * 15 14 12 17 17 N 1.31856 * 120.99070 * 180.02562 * 16 15 14 18 18 C 1.31686 * 121.96858 * 0.02562 * 17 16 15 19 19 C 1.39594 * 120.71036 * 359.97438 * 18 17 16 20 20 C 1.47732 * 120.52600 * 180.02562 * 19 18 17 21 21 O 1.21473 * 120.00069 * 180.02562 * 20 19 18 22 22 O 1.34716 * 119.99953 * 0.02562 * 20 19 18 23 23 C 1.38980 * 120.41459 * 32.70221 * 15 14 12 24 24 H 0.97002 * 119.99845 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47156 * 60.00444 * 9 7 2 26 26 H 1.08996 * 109.47924 * 299.99958 * 9 7 2 27 27 H 1.08998 * 109.47019 * 60.00041 * 10 9 7 28 28 H 1.09002 * 109.47368 * 299.99933 * 10 9 7 29 29 H 1.08998 * 109.47269 * 60.00034 * 11 10 9 30 30 H 1.08994 * 109.46997 * 300.00360 * 11 10 9 31 31 H 0.96998 * 119.99660 * 5.27209 * 14 12 11 32 32 H 1.08002 * 119.50472 * 0.02562 * 16 15 14 33 33 H 1.07994 * 119.64447 * 179.97438 * 18 17 16 34 34 H 0.96704 * 116.99208 * 179.97438 * 22 20 19 35 35 H 1.07995 * 120.88648 * 0.24624 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0025 12 6 2.4594 -6.1325 -0.0031 13 8 3.6519 -5.9109 -0.0026 14 7 2.0101 -7.4033 -0.0032 15 6 2.9149 -8.4656 0.1074 16 6 2.6609 -9.6755 -0.5279 17 7 3.5051 -10.6837 -0.4309 18 6 4.6191 -10.5956 0.2658 19 6 4.9503 -9.4160 0.9347 20 6 6.2014 -9.3215 1.7146 21 8 6.4800 -8.2905 2.2933 22 8 7.0334 -10.3788 1.7839 23 6 4.0786 -8.3239 0.8539 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8725 -3.6048 0.8877 28 1 2.8712 -3.6040 -0.8923 29 1 0.8531 -5.0442 -0.8922 30 1 0.8538 -5.0454 0.8877 31 1 1.0598 -7.5816 -0.0801 32 1 1.7584 -9.7915 -1.1097 33 1 5.2836 -11.4452 0.3202 34 1 7.8400 -10.2691 2.3059 35 1 4.3018 -7.3976 1.3622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:43 Heat of formation + Delta-G solvation = -131.563153 kcal Electronic energy + Delta-G solvation = -20177.887966 eV Core-core repulsion = 16753.305613 eV Total energy + Delta-G solvation = -3424.582354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19745 -41.16032 -40.16298 -37.21648 -36.48856 -36.03501 -34.12165 -33.57893 -31.63908 -29.54181 -26.53090 -26.18467 -24.63009 -22.82441 -22.27222 -21.35857 -19.48953 -19.14524 -18.54794 -18.04159 -17.99349 -17.34590 -16.95350 -16.80568 -16.55301 -16.39374 -15.26096 -15.19427 -14.81340 -14.58278 -14.36139 -14.21549 -13.80131 -13.62094 -13.15242 -12.71293 -12.65283 -12.54731 -12.43735 -12.19856 -12.10719 -11.56653 -11.52558 -11.33417 -11.15307 -11.00379 -10.56147 -10.54724 -9.52076 -8.21469 -6.30813 -0.68583 -0.07395 1.28888 1.38935 1.39434 1.51014 1.53082 1.72722 1.97566 2.40767 2.64085 3.11883 3.34799 3.53507 3.65938 3.69322 3.86141 3.98319 4.20000 4.25276 4.39697 4.76786 4.78137 4.89422 4.95266 5.02458 5.08792 5.19309 5.44833 5.49535 5.54195 5.75358 5.86733 6.24600 6.29506 6.64488 6.84790 6.85810 7.01985 7.37848 8.89889 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027147 B = 0.003036 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.172067 B = 9221.544527 C =10112.633536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.049 0.951 9 C 0.026 3.974 10 C -0.086 4.086 11 C -0.126 4.126 12 C 0.517 3.483 13 O -0.560 6.560 14 N -0.653 5.653 15 C 0.086 3.914 16 C 0.128 3.872 17 N -0.479 5.479 18 C 0.150 3.850 19 C -0.174 4.174 20 C 0.539 3.461 21 O -0.549 6.549 22 O -0.493 6.493 23 C -0.043 4.043 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.003 0.997 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.438 0.562 32 H 0.206 0.794 33 H 0.200 0.800 34 H 0.437 0.563 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.767 -26.072 0.552 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.067 0.933 9 C -0.011 4.011 10 C -0.124 4.124 11 C -0.165 4.165 12 C 0.307 3.693 13 O -0.437 6.437 14 N -0.302 5.302 15 C -0.012 4.012 16 C -0.032 4.032 17 N -0.187 5.187 18 C -0.008 4.008 19 C -0.178 4.178 20 C 0.383 3.617 21 O -0.440 6.440 22 O -0.307 6.307 23 C -0.071 4.071 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.021 0.979 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.279 0.721 32 H 0.223 0.777 33 H 0.217 0.783 34 H 0.300 0.700 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.952 -26.302 0.066 26.764 hybrid contribution 0.789 2.216 0.932 2.530 sum 5.741 -24.086 0.999 24.781 Atomic orbital electron populations 1.70050 1.07381 1.27783 1.51579 1.25861 0.95812 1.02922 0.94733 0.85546 0.78628 0.78941 0.78548 1.19691 1.20282 1.19494 1.21702 0.93291 0.92977 1.50715 0.93282 1.19011 0.94158 0.92106 0.95791 1.21200 0.97756 0.93135 1.00345 1.21707 0.97530 0.90469 1.06803 1.21482 0.89850 0.84451 0.73557 1.90737 1.19105 1.85036 1.48838 1.43400 1.11153 1.03118 1.72531 1.18810 0.92824 0.91015 0.98514 1.23499 0.99725 0.86328 0.93601 1.67896 1.03581 1.30098 1.17093 1.23508 0.92896 0.95709 0.88684 1.20018 0.95227 0.97256 1.05328 1.20603 0.83414 0.80482 0.77177 1.90946 1.75391 1.32364 1.45347 1.84468 1.36351 1.39816 1.70065 1.21712 0.93143 0.98214 0.93985 0.92636 0.97667 0.97863 0.94297 0.93986 0.86042 0.86440 0.72055 0.77717 0.78322 0.69987 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.62 4.44 30.60 0.14 -3.49 16 11 C -0.13 -3.58 5.70 29.85 0.17 -3.41 16 12 C 0.52 14.63 7.59 87.66 0.67 15.29 16 13 O -0.56 -21.47 13.67 -3.06 -0.04 -21.52 16 14 N -0.65 -12.12 5.35 -303.28 -1.62 -13.74 16 15 C 0.09 1.74 6.31 38.20 0.24 1.98 16 16 C 0.13 1.89 11.11 84.87 0.94 2.83 16 17 N -0.48 -8.07 10.34 -194.25 -2.01 -10.08 16 18 C 0.15 2.48 10.78 85.04 0.92 3.39 16 19 C -0.17 -3.83 5.89 -20.02 -0.12 -3.94 16 20 C 0.54 12.00 8.28 70.33 0.58 12.58 16 21 O -0.55 -17.13 17.20 19.92 0.34 -16.79 16 22 O -0.49 -6.13 12.70 -56.26 -0.71 -6.85 16 23 C -0.04 -1.12 8.30 22.87 0.19 -0.93 16 24 H 0.26 14.90 8.31 -92.71 -0.77 14.12 16 25 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 28 H 0.04 1.85 8.10 -2.39 -0.02 1.84 16 29 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.44 4.08 8.82 -92.71 -0.82 3.26 16 32 H 0.21 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.20 2.08 7.62 -2.91 -0.02 2.05 16 34 H 0.44 1.65 9.11 -74.05 -0.67 0.97 16 35 H 0.13 4.30 6.16 -2.91 -0.02 4.28 16 Total: -1.00 -81.79 315.94 2.49 -79.29 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -0.34 Total: 3.17 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 4.57 Total: -5.21 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -3.35 Total: -79.24 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.41 Total: -45.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -81.79 2.49 -79.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.268 kcal (2) G-P(sol) polarization free energy of solvation -81.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds