Wall clock time and date at job start Mon Mar 30 2020 23:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00212 * 2 1 4 4 H 1.48501 * 109.47007 * 239.99753 * 3 2 1 5 5 H 1.48497 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46834 * 119.99749 * 3 2 1 7 7 C 1.37874 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00559 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47564 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47232 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99693 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99590 * 180.02562 * 11 10 9 14 14 N 1.40107 * 119.99435 * 180.27723 * 13 11 10 15 15 C 1.38823 * 119.99958 * 179.72259 * 14 13 11 16 16 C 1.38970 * 120.18358 * 354.46715 * 15 14 13 17 17 C 1.37943 * 120.07383 * 180.02562 * 16 15 14 18 18 C 1.38629 * 120.43566 * 0.02562 * 17 16 15 19 19 C 1.37726 * 120.36091 * 359.97438 * 18 17 16 20 20 C 1.39798 * 119.92192 * 359.70089 * 19 18 17 21 21 C 1.47288 * 120.21774 * 180.30122 * 20 19 18 22 22 O 1.21522 * 120.00293 * 185.49136 * 21 20 19 23 23 O 1.34765 * 120.00076 * 5.48965 * 21 20 19 24 24 H 0.97007 * 120.00007 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46759 * 59.99595 * 9 7 2 26 26 H 1.09011 * 109.46454 * 300.00329 * 9 7 2 27 27 H 1.08997 * 109.47499 * 59.99944 * 10 9 7 28 28 H 1.09004 * 109.47139 * 300.00232 * 10 9 7 29 29 H 0.96998 * 120.00698 * 359.97438 * 13 11 10 30 30 H 0.96998 * 119.99808 * 359.72002 * 14 13 11 31 31 H 1.08007 * 119.95994 * 0.02562 * 16 15 14 32 32 H 1.07998 * 119.78303 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.82201 * 179.97438 * 18 17 16 34 34 H 1.07998 * 120.03895 * 179.97438 * 19 18 17 35 35 H 0.96697 * 117.00383 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0025 12 8 0.2787 -4.9671 0.0024 13 7 2.1655 -6.1344 0.0041 14 7 1.4649 -7.3477 -0.0011 15 6 2.1590 -8.5500 -0.0052 16 6 3.5440 -8.5568 -0.1200 17 6 4.2313 -9.7528 -0.1243 18 6 3.5496 -10.9549 -0.0152 19 6 2.1772 -10.9691 0.0994 20 6 1.4661 -9.7655 0.1122 21 6 -0.0011 -9.7728 0.2412 22 8 -0.6241 -8.7332 0.1519 23 8 -0.6527 -10.9323 0.4581 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6239 -2.5566 0.8904 27 1 2.8711 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8877 29 1 3.1355 -6.1344 0.0046 30 1 0.4949 -7.3476 -0.0019 31 1 4.0827 -7.6246 -0.2058 32 1 5.3076 -9.7526 -0.2141 33 1 4.0977 -11.8855 -0.0201 34 1 1.6514 -11.9086 0.1836 35 1 -1.6155 -10.8869 0.5362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:13 Heat of formation + Delta-G solvation = -67.549474 kcal Electronic energy + Delta-G solvation = -20467.721564 eV Core-core repulsion = 17045.915052 eV Total energy + Delta-G solvation = -3421.806512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89836 -39.53966 -38.70389 -36.52684 -35.71264 -33.54323 -32.31386 -31.52959 -30.88896 -28.49322 -25.66090 -24.76222 -22.93957 -21.77418 -21.49292 -19.94178 -18.45701 -18.16560 -17.42678 -17.09908 -16.46023 -15.88518 -15.54573 -15.17864 -14.97125 -14.76788 -14.45538 -14.02531 -13.68458 -13.47366 -13.40435 -12.59962 -12.30686 -12.22951 -11.81509 -11.61610 -11.53636 -11.25666 -10.94199 -10.67177 -10.65154 -10.04366 -9.78360 -9.46173 -9.40652 -9.36246 -9.15898 -8.36183 -7.37479 -5.99695 -4.05043 0.53601 1.27905 2.05029 2.34420 2.83337 3.03770 3.32578 3.37484 3.38955 3.59048 4.24916 4.44607 4.46317 4.70234 4.83586 5.11250 5.16630 5.26137 5.35292 5.42074 5.62593 5.86106 6.03980 6.07130 6.07587 6.19611 6.25166 6.50847 6.68399 6.95680 7.45707 7.63747 7.69211 7.77983 7.89815 8.01367 8.31900 8.63121 9.02573 9.58791 11.11157 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.003202 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.957734 B = 8743.246859 C = 9597.167281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.117 4.117 11 C 0.508 3.492 12 O -0.523 6.523 13 N -0.545 5.545 14 N -0.511 5.511 15 C 0.286 3.714 16 C -0.221 4.221 17 C -0.022 4.022 18 C -0.206 4.206 19 C -0.003 4.003 20 C -0.225 4.225 21 C 0.534 3.466 22 O -0.523 6.523 23 O -0.511 6.511 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.417 0.583 30 H 0.448 0.552 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.236 -24.448 0.267 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.159 4.159 11 C 0.297 3.703 12 O -0.395 6.395 13 N -0.295 5.295 14 N -0.241 5.241 15 C 0.171 3.829 16 C -0.244 4.244 17 C -0.041 4.041 18 C -0.226 4.226 19 C -0.021 4.021 20 C -0.233 4.233 21 C 0.382 3.618 22 O -0.413 6.413 23 O -0.322 6.322 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.259 0.741 30 H 0.305 0.695 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.376 -23.789 0.216 24.907 hybrid contribution -0.036 0.906 0.037 0.907 sum 7.340 -22.883 0.253 24.033 Atomic orbital electron populations 1.69988 1.06093 1.26836 1.49764 1.25027 0.94841 0.99297 0.95177 0.86617 0.79516 0.83025 0.78566 1.20205 1.21267 1.20200 1.21136 0.92929 0.90798 1.51969 0.92481 1.18941 0.93131 0.89061 0.98955 1.21899 1.00886 0.89901 1.03172 1.22118 0.89269 0.83885 0.75046 1.90733 1.14168 1.86705 1.47866 1.45694 1.08210 0.96704 1.78907 1.44874 1.09275 0.94289 1.75712 1.17766 0.91731 0.83538 0.89866 1.20476 0.91257 0.99519 1.13182 1.21130 0.99953 0.91611 0.91445 1.20849 0.93945 0.98251 1.09600 1.21155 0.94104 0.96209 0.90673 1.18197 0.88891 0.93100 1.23106 1.20756 0.88454 0.80724 0.71895 1.90627 1.68539 1.32958 1.49206 1.84531 1.27793 1.35584 1.84311 0.92795 0.95574 0.95583 0.89527 0.89515 0.74149 0.69491 0.85370 0.85255 0.85477 0.84521 0.72681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.12 -2.29 5.64 -27.89 -0.16 -2.45 16 11 C 0.51 9.96 7.95 -10.98 -0.09 9.87 16 12 O -0.52 -12.78 15.82 5.56 0.09 -12.69 16 13 N -0.55 -8.28 6.21 31.22 0.19 -8.08 16 14 N -0.51 -8.07 6.30 32.55 0.21 -7.86 16 15 C 0.29 3.64 6.72 -83.61 -0.56 3.08 16 16 C -0.22 -2.18 9.45 -39.42 -0.37 -2.55 16 17 C -0.02 -0.17 10.03 -39.55 -0.40 -0.57 16 18 C -0.21 -1.55 10.02 -39.62 -0.40 -1.95 16 19 C 0.00 -0.02 9.61 -39.19 -0.38 -0.40 16 20 C -0.22 -2.64 5.89 -104.82 -0.62 -3.25 16 21 C 0.53 6.65 8.25 34.41 0.28 6.94 16 22 O -0.52 -8.43 14.43 -19.28 -0.28 -8.71 16 23 O -0.51 -4.39 12.69 -40.67 -0.52 -4.90 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.03 0.76 8.10 -51.92 -0.42 0.34 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.42 4.65 6.62 -182.59 -1.21 3.45 16 30 H 0.45 8.24 4.51 -182.72 -0.82 7.42 16 31 H 0.13 1.04 6.23 -52.48 -0.33 0.71 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.14 0.94 7.62 -52.49 -0.40 0.54 16 35 H 0.41 1.86 9.11 45.56 0.42 2.28 16 LS Contribution 310.73 15.07 4.68 4.68 Total: -1.00 -36.68 310.73 -7.54 -44.22 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.42 Total: 7.40 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.21 Total: -3.93 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 1.14 Total: -42.50 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.71 Total: -26.31 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.68 -7.54 -44.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.332 kcal (2) G-P(sol) polarization free energy of solvation -36.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds