Wall clock time and date at job start Mon Mar 30 2020 23:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00212 * 2 1 4 4 H 1.48501 * 109.47007 * 239.99753 * 3 2 1 5 5 H 1.48497 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46834 * 119.99749 * 3 2 1 7 7 C 1.37874 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00559 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47564 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47232 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99693 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99590 * 180.02562 * 11 10 9 14 14 N 1.40107 * 119.99435 * 180.27723 * 13 11 10 15 15 C 1.38823 * 119.99958 * 179.72259 * 14 13 11 16 16 C 1.38970 * 120.18358 * 354.46715 * 15 14 13 17 17 C 1.37943 * 120.07383 * 180.02562 * 16 15 14 18 18 C 1.38629 * 120.43566 * 0.02562 * 17 16 15 19 19 C 1.37726 * 120.36091 * 359.97438 * 18 17 16 20 20 C 1.39798 * 119.92192 * 359.70089 * 19 18 17 21 21 C 1.47288 * 120.21774 * 180.30122 * 20 19 18 22 22 O 1.21522 * 120.00293 * 185.49136 * 21 20 19 23 23 O 1.34765 * 120.00076 * 5.48965 * 21 20 19 24 24 H 0.97007 * 120.00007 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46759 * 59.99595 * 9 7 2 26 26 H 1.09011 * 109.46454 * 300.00329 * 9 7 2 27 27 H 1.08997 * 109.47499 * 59.99944 * 10 9 7 28 28 H 1.09004 * 109.47139 * 300.00232 * 10 9 7 29 29 H 0.96998 * 120.00698 * 359.97438 * 13 11 10 30 30 H 0.96998 * 119.99808 * 359.72002 * 14 13 11 31 31 H 1.08007 * 119.95994 * 0.02562 * 16 15 14 32 32 H 1.07998 * 119.78303 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.82201 * 179.97438 * 18 17 16 34 34 H 1.07998 * 120.03895 * 179.97438 * 19 18 17 35 35 H 0.96697 * 117.00383 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0025 12 8 0.2787 -4.9671 0.0024 13 7 2.1655 -6.1344 0.0041 14 7 1.4649 -7.3477 -0.0011 15 6 2.1590 -8.5500 -0.0052 16 6 3.5440 -8.5568 -0.1200 17 6 4.2313 -9.7528 -0.1243 18 6 3.5496 -10.9549 -0.0152 19 6 2.1772 -10.9691 0.0994 20 6 1.4661 -9.7655 0.1122 21 6 -0.0011 -9.7728 0.2412 22 8 -0.6241 -8.7332 0.1519 23 8 -0.6527 -10.9323 0.4581 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6239 -2.5566 0.8904 27 1 2.8711 -3.6040 0.8922 28 1 2.8725 -3.6047 -0.8877 29 1 3.1355 -6.1344 0.0046 30 1 0.4949 -7.3476 -0.0019 31 1 4.0827 -7.6246 -0.2058 32 1 5.3076 -9.7526 -0.2141 33 1 4.0977 -11.8855 -0.0201 34 1 1.6514 -11.9086 0.1836 35 1 -1.6155 -10.8869 0.5362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:12 Heat of formation + Delta-G solvation = -95.283566 kcal Electronic energy + Delta-G solvation = -20468.924205 eV Core-core repulsion = 17045.915052 eV Total energy + Delta-G solvation = -3423.009153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83898 -40.86690 -39.67450 -37.47604 -36.83394 -35.59577 -33.63092 -32.71730 -32.19729 -29.57953 -27.52507 -25.58113 -24.32537 -22.92103 -22.67292 -21.31274 -19.45823 -19.11275 -18.94246 -18.09163 -18.00609 -16.94689 -16.86090 -16.66567 -16.47774 -15.70708 -15.57667 -15.20095 -14.86611 -14.71746 -14.23916 -14.21885 -14.11905 -13.29659 -12.99933 -12.80626 -12.72239 -12.62713 -12.52955 -12.26458 -11.94765 -11.68832 -11.58718 -11.35551 -11.06472 -10.57538 -10.47660 -10.09563 -8.41231 -8.18117 -6.32684 -0.25033 0.51454 0.88372 1.43430 1.47967 1.48817 1.53521 1.55655 2.05910 2.42868 2.84407 3.13530 3.15348 3.70953 3.84248 4.07957 4.14562 4.40890 4.43723 4.49245 4.50581 4.66766 4.98429 4.99075 5.07913 5.39002 5.43033 5.48978 5.57320 5.59152 5.65904 5.83623 5.95488 6.14136 6.27690 6.61560 6.85895 6.90308 7.27030 7.37917 8.94585 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031812 B = 0.003202 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.957734 B = 8743.246859 C = 9597.167281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.009 4.009 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.040 3.960 10 C -0.103 4.103 11 C 0.508 3.492 12 O -0.586 6.586 13 N -0.518 5.518 14 N -0.539 5.539 15 C 0.255 3.745 16 C -0.227 4.227 17 C -0.014 4.014 18 C -0.191 4.191 19 C -0.005 4.005 20 C -0.241 4.241 21 C 0.532 3.468 22 O -0.568 6.568 23 O -0.497 6.497 24 H 0.262 0.738 25 H -0.017 1.017 26 H -0.018 1.018 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.437 0.563 30 H 0.433 0.567 31 H 0.143 0.857 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.376 -26.289 0.252 29.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.100 0.900 9 C 0.002 3.998 10 C -0.144 4.144 11 C 0.297 3.703 12 O -0.463 6.463 13 N -0.267 5.267 14 N -0.271 5.271 15 C 0.145 3.855 16 C -0.250 4.250 17 C -0.033 4.033 18 C -0.211 4.211 19 C -0.023 4.023 20 C -0.249 4.249 21 C 0.382 3.618 22 O -0.462 6.462 23 O -0.309 6.309 24 H 0.071 0.929 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.283 0.717 30 H 0.288 0.712 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 11.629 -25.751 0.206 28.256 hybrid contribution -1.274 1.174 0.050 1.733 sum 10.356 -24.577 0.256 26.671 Atomic orbital electron populations 1.70187 1.08456 1.27902 1.51418 1.26177 0.95700 1.04120 0.94620 0.85334 0.77972 0.77109 0.79580 1.18522 1.21644 1.18528 1.21675 0.94224 0.91213 1.50887 0.89951 1.18726 0.93766 0.92388 0.94901 1.21637 0.99255 0.87357 1.06156 1.21965 0.88361 0.85193 0.74810 1.90712 1.16741 1.87631 1.51243 1.45116 1.08854 0.96230 1.76538 1.44934 1.08895 0.94703 1.78614 1.18203 0.93035 0.82663 0.91568 1.20808 0.90051 1.01386 1.12724 1.21610 1.01778 0.90620 0.89259 1.21349 0.93400 0.99734 1.06591 1.21457 0.94980 0.95729 0.90166 1.18486 0.88666 0.94032 1.23713 1.21089 0.89133 0.80690 0.70898 1.90623 1.69542 1.34640 1.51432 1.84486 1.29365 1.33666 1.83421 0.92895 0.99876 0.99918 0.86399 0.86325 0.71717 0.71236 0.83900 0.81562 0.82008 0.82549 0.70679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.09 13.29 21.45 0.28 -59.80 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.98 44.01 29.54 68.60 2.03 46.04 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 8 H 0.08 4.11 7.74 -2.91 -0.02 4.08 16 9 C 0.04 2.22 4.26 29.84 0.13 2.35 16 10 C -0.10 -4.01 5.64 29.85 0.17 -3.85 16 11 C 0.51 20.61 7.95 87.66 0.70 21.31 16 12 O -0.59 -30.87 15.82 -3.03 -0.05 -30.91 16 13 N -0.52 -15.76 6.21 -173.53 -1.08 -16.83 16 14 N -0.54 -17.59 6.30 -50.93 -0.32 -17.91 16 15 C 0.26 6.36 6.72 38.74 0.26 6.62 16 16 C -0.23 -3.87 9.45 22.38 0.21 -3.66 16 17 C -0.01 -0.15 10.03 22.29 0.22 0.07 16 18 C -0.19 -1.99 10.02 22.24 0.22 -1.77 16 19 C 0.00 -0.07 9.61 22.53 0.22 0.15 16 20 C -0.24 -5.49 5.89 -19.99 -0.12 -5.61 16 21 C 0.53 13.59 8.25 70.20 0.58 14.17 16 22 O -0.57 -19.68 14.43 19.76 0.29 -19.39 16 23 O -0.50 -8.22 12.69 -56.75 -0.72 -8.94 16 24 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 25 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 26 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 27 H 0.12 3.84 8.14 -2.39 -0.02 3.83 16 28 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.44 9.03 6.62 -213.32 -1.41 7.62 16 30 H 0.43 17.13 4.51 -215.30 -0.97 16.16 16 31 H 0.14 1.88 6.23 -2.91 -0.02 1.86 16 32 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 33 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 34 H 0.16 1.63 7.62 -2.91 -0.02 1.61 16 35 H 0.43 3.73 9.11 -74.06 -0.67 3.05 16 Total: -1.00 -87.04 310.73 1.82 -85.22 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -1.90 Total: 22.99 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 3.28 Total: -0.46 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -1.11 Total: -94.54 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.48 Total: -59.24 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -87.04 1.82 -85.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.065 kcal (2) G-P(sol) polarization free energy of solvation -87.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds