Wall clock time and date at job start Mon Mar 30 2020 23:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48502 * 109.47209 * 269.99568 * 3 2 1 5 5 H 1.48497 * 109.47252 * 29.99978 * 3 2 1 6 6 H 1.48503 * 109.46933 * 149.99824 * 3 2 1 7 7 C 1.37876 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99860 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00319 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47413 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47419 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99461 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00343 * 180.02562 * 11 10 9 14 14 N 1.40095 * 120.00195 * 179.97438 * 13 11 10 15 15 C 1.39714 * 120.00134 * 180.02562 * 14 13 11 16 16 C 1.39026 * 120.00173 * 359.97438 * 15 14 13 17 17 C 1.38208 * 120.23228 * 180.02562 * 16 15 14 18 18 C 1.38014 * 120.23241 * 359.97359 * 17 16 15 19 19 C 1.39629 * 119.99973 * 0.02562 * 18 17 16 20 20 C 1.47746 * 120.11452 * 180.02562 * 19 18 17 21 21 O 1.21462 * 119.99816 * 179.97438 * 20 19 18 22 22 O 1.34710 * 119.99802 * 359.97438 * 20 19 18 23 23 C 1.38625 * 120.00137 * 179.97438 * 15 14 13 24 24 H 0.97005 * 119.99639 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46917 * 59.99593 * 9 7 2 26 26 H 1.09000 * 109.47175 * 300.00438 * 9 7 2 27 27 H 1.09003 * 109.47274 * 59.99980 * 10 9 7 28 28 H 1.09004 * 109.47545 * 299.99707 * 10 9 7 29 29 H 0.96999 * 119.99846 * 0.02562 * 13 11 10 30 30 H 0.96999 * 119.99959 * 359.97438 * 14 13 11 31 31 H 1.07999 * 119.88300 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.88739 * 180.02562 * 17 16 15 33 33 H 1.08003 * 120.00060 * 179.97438 * 18 17 16 34 34 H 0.96705 * 116.99582 * 180.02562 * 22 20 19 35 35 H 1.08006 * 120.11782 * 359.70666 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0023 11 6 5.5285 -2.6367 0.0022 12 8 6.1349 -1.5863 0.0018 13 7 6.2023 -3.8039 0.0026 14 7 7.6032 -3.8039 0.0021 15 6 8.3018 -5.0139 0.0019 16 6 7.6067 -6.2179 0.0029 17 6 8.2928 -7.4176 0.0034 18 6 9.6729 -7.4288 0.0023 19 6 10.3809 -6.2253 0.0012 20 6 11.8583 -6.2343 -0.0006 21 8 12.4720 -5.1861 -0.0019 22 8 12.5247 -7.4050 -0.0007 23 6 9.6880 -5.0140 0.0008 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.6584 -3.1511 -0.8875 28 1 3.6578 -3.1499 0.8925 29 1 5.7173 -4.6439 0.0026 30 1 8.0883 -2.9639 0.0010 31 1 6.5267 -6.2157 0.0034 32 1 7.7473 -8.3496 0.0037 33 1 10.2054 -8.3685 0.0030 34 1 13.4907 -7.3603 -0.0015 35 1 10.2300 -4.0798 -0.0048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:28 Heat of formation + Delta-G solvation = -69.119238 kcal Electronic energy + Delta-G solvation = -19915.176108 eV Core-core repulsion = 16493.301526 eV Total energy + Delta-G solvation = -3421.874582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78637 -39.90545 -38.88253 -36.44675 -35.97694 -33.62354 -32.43987 -31.60158 -31.27635 -28.56689 -26.02457 -25.13540 -22.73492 -22.08664 -21.04176 -20.16979 -18.73812 -18.17054 -17.53536 -17.09949 -16.37569 -16.27512 -15.97252 -15.38195 -15.20643 -14.83890 -14.16318 -14.03494 -13.85276 -13.73681 -13.59254 -12.85689 -12.63927 -12.17746 -11.99257 -11.69720 -11.64553 -11.53351 -11.04578 -10.96694 -10.31322 -10.17187 -9.89466 -9.59016 -9.56784 -9.44481 -9.27738 -8.57508 -7.45707 -6.09520 -4.09324 0.35206 1.14356 1.85082 2.23193 2.67264 2.84547 3.33405 3.40553 3.49658 3.50146 4.09722 4.44861 4.48325 4.54765 4.78936 4.89053 5.04750 5.15151 5.25751 5.33625 5.48001 5.82889 5.86804 5.90883 5.94729 6.06242 6.11666 6.30002 6.47370 6.76137 7.21241 7.29787 7.31679 7.51923 7.60986 7.70081 8.39403 8.47591 8.92447 9.52806 11.03019 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044013 B = 0.002723 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.025349 B =10281.630717 C =10897.208968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.110 4.110 11 C 0.510 3.490 12 O -0.537 6.537 13 N -0.536 5.536 14 N -0.541 5.541 15 C 0.215 3.785 16 C -0.167 4.167 17 C -0.077 4.077 18 C -0.125 4.125 19 C -0.076 4.076 20 C 0.528 3.472 21 O -0.512 6.512 22 O -0.511 6.511 23 C -0.131 4.131 24 H 0.264 0.736 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.420 0.580 30 H 0.435 0.565 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.414 0.586 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.661 -18.641 0.034 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.152 4.152 11 C 0.299 3.701 12 O -0.411 6.411 13 N -0.285 5.285 14 N -0.265 5.265 15 C 0.110 3.890 16 C -0.191 4.191 17 C -0.095 4.095 18 C -0.145 4.145 19 C -0.078 4.078 20 C 0.372 3.628 21 O -0.401 6.401 22 O -0.323 6.323 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.261 0.739 30 H 0.278 0.722 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.273 0.727 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 20.442 -17.429 0.038 26.863 hybrid contribution 0.958 0.828 -0.031 1.267 sum 21.400 -16.601 0.007 27.084 Atomic orbital electron populations 1.69905 1.06289 1.27084 1.50667 1.24963 0.94724 0.99251 0.94222 0.86797 0.80583 0.83385 0.78781 1.20200 1.21369 1.18570 1.21052 0.89000 0.94682 1.51827 0.90778 1.19398 0.96628 0.89625 0.97937 1.21682 0.85495 1.04001 1.04000 1.22014 0.91500 0.81657 0.74943 1.90690 1.70259 1.30983 1.49152 1.45410 0.93951 1.10694 1.78425 1.43419 0.94398 1.06582 1.82104 1.17527 0.90370 0.85399 0.95719 1.20771 1.00026 0.91122 1.07181 1.20879 0.93783 0.97575 0.97311 1.21192 0.94193 0.97188 1.01955 1.18603 0.88468 0.94250 1.06464 1.20923 0.88952 0.80894 0.72015 1.90904 1.69899 1.33363 1.45930 1.84557 1.26991 1.34920 1.85810 1.20431 0.91336 0.98218 1.05507 0.92611 0.95628 0.96070 0.88953 0.88915 0.73854 0.72178 0.85601 0.84845 0.84649 0.72714 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.53 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 10 C -0.11 -1.94 5.64 -27.88 -0.16 -2.10 16 11 C 0.51 8.54 7.95 -10.99 -0.09 8.45 16 12 O -0.54 -11.14 15.82 5.55 0.09 -11.05 16 13 N -0.54 -6.69 6.22 31.22 0.19 -6.50 16 14 N -0.54 -6.53 6.45 32.39 0.21 -6.32 16 15 C 0.22 2.23 6.71 -83.83 -0.56 1.67 16 16 C -0.17 -1.43 9.48 -39.30 -0.37 -1.80 16 17 C -0.08 -0.55 10.02 -39.67 -0.40 -0.95 16 18 C -0.12 -0.97 9.61 -39.14 -0.38 -1.35 16 19 C -0.08 -0.73 5.87 -105.01 -0.62 -1.35 16 20 C 0.53 5.12 8.27 34.62 0.29 5.40 16 21 O -0.51 -6.49 17.13 -19.24 -0.33 -6.82 16 22 O -0.51 -3.25 12.68 -40.52 -0.51 -3.76 16 23 C -0.13 -1.36 9.44 -38.95 -0.37 -1.73 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 26 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.42 3.88 6.59 -182.60 -1.20 2.68 16 30 H 0.43 5.53 8.01 -182.60 -1.46 4.07 16 31 H 0.13 0.86 6.19 -52.49 -0.32 0.54 16 32 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.14 0.83 7.60 -52.48 -0.40 0.43 16 34 H 0.41 0.82 9.11 45.56 0.42 1.23 16 35 H 0.14 1.46 7.65 -52.48 -0.40 1.06 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -35.72 312.41 -7.71 -43.43 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.99 Total: 2.19 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -3.17 Total: -6.73 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 1.18 Total: -39.37 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.76 Total: -21.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.72 -7.71 -43.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.694 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds