Wall clock time and date at job start Mon Mar 30 2020 23:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48502 * 109.47209 * 269.99568 * 3 2 1 5 5 H 1.48497 * 109.47252 * 29.99978 * 3 2 1 6 6 H 1.48503 * 109.46933 * 149.99824 * 3 2 1 7 7 C 1.37876 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99860 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00319 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47413 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47419 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99461 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00343 * 180.02562 * 11 10 9 14 14 N 1.40095 * 120.00195 * 179.97438 * 13 11 10 15 15 C 1.39714 * 120.00134 * 180.02562 * 14 13 11 16 16 C 1.39026 * 120.00173 * 359.97438 * 15 14 13 17 17 C 1.38208 * 120.23228 * 180.02562 * 16 15 14 18 18 C 1.38014 * 120.23241 * 359.97359 * 17 16 15 19 19 C 1.39629 * 119.99973 * 0.02562 * 18 17 16 20 20 C 1.47746 * 120.11452 * 180.02562 * 19 18 17 21 21 O 1.21462 * 119.99816 * 179.97438 * 20 19 18 22 22 O 1.34710 * 119.99802 * 359.97438 * 20 19 18 23 23 C 1.38625 * 120.00137 * 179.97438 * 15 14 13 24 24 H 0.97005 * 119.99639 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46917 * 59.99593 * 9 7 2 26 26 H 1.09000 * 109.47175 * 300.00438 * 9 7 2 27 27 H 1.09003 * 109.47274 * 59.99980 * 10 9 7 28 28 H 1.09004 * 109.47545 * 299.99707 * 10 9 7 29 29 H 0.96999 * 119.99846 * 0.02562 * 13 11 10 30 30 H 0.96999 * 119.99959 * 359.97438 * 14 13 11 31 31 H 1.07999 * 119.88300 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.88739 * 180.02562 * 17 16 15 33 33 H 1.08003 * 120.00060 * 179.97438 * 18 17 16 34 34 H 0.96705 * 116.99582 * 180.02562 * 22 20 19 35 35 H 1.08006 * 120.11782 * 359.70666 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0023 11 6 5.5285 -2.6367 0.0022 12 8 6.1349 -1.5863 0.0018 13 7 6.2023 -3.8039 0.0026 14 7 7.6032 -3.8039 0.0021 15 6 8.3018 -5.0139 0.0019 16 6 7.6067 -6.2179 0.0029 17 6 8.2928 -7.4176 0.0034 18 6 9.6729 -7.4288 0.0023 19 6 10.3809 -6.2253 0.0012 20 6 11.8583 -6.2343 -0.0006 21 8 12.4720 -5.1861 -0.0019 22 8 12.5247 -7.4050 -0.0007 23 6 9.6880 -5.0140 0.0008 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.6584 -3.1511 -0.8875 28 1 3.6578 -3.1499 0.8925 29 1 5.7173 -4.6439 0.0026 30 1 8.0883 -2.9639 0.0010 31 1 6.5267 -6.2157 0.0034 32 1 7.7473 -8.3496 0.0037 33 1 10.2054 -8.3685 0.0030 34 1 13.4907 -7.3603 -0.0015 35 1 10.2300 -4.0798 -0.0048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:27 Heat of formation + Delta-G solvation = -95.432051 kcal Electronic energy + Delta-G solvation = -19916.317117 eV Core-core repulsion = 16493.301526 eV Total energy + Delta-G solvation = -3423.015591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53286 -40.98410 -39.78803 -37.12278 -36.98593 -35.55284 -33.70792 -32.89434 -32.27981 -29.60399 -27.64232 -25.90847 -23.56425 -23.45683 -22.01784 -21.46386 -19.69310 -19.11255 -18.92337 -18.29241 -17.54844 -17.03126 -16.74605 -16.66120 -16.36759 -16.00266 -15.60917 -15.12583 -14.91793 -14.68933 -14.65616 -14.31909 -14.18834 -13.43286 -12.95797 -12.81807 -12.72403 -12.51875 -12.37547 -12.15268 -11.98379 -11.77704 -11.71957 -11.39969 -11.06228 -10.77554 -10.48109 -10.11506 -8.34662 -8.30795 -6.33364 -0.35006 0.45699 0.86833 1.33544 1.36472 1.47107 1.50071 1.60987 2.05421 2.35062 2.81078 3.05371 3.11926 3.80078 3.87070 3.94597 4.13230 4.25841 4.34746 4.48320 4.48885 4.62494 4.86350 4.96732 5.13849 5.29091 5.35041 5.42620 5.43810 5.52778 5.57115 5.62773 5.86694 6.21918 6.28060 6.62167 6.74119 6.94303 7.29419 7.32112 8.84541 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.044013 B = 0.002723 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.025349 B =10281.630717 C =10897.208968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.003 3.997 10 C -0.103 4.103 11 C 0.514 3.486 12 O -0.584 6.584 13 N -0.512 5.512 14 N -0.552 5.552 15 C 0.198 3.802 16 C -0.165 4.165 17 C -0.072 4.072 18 C -0.111 4.111 19 C -0.094 4.094 20 C 0.533 3.467 21 O -0.552 6.552 22 O -0.499 6.499 23 C -0.143 4.143 24 H 0.267 0.733 25 H 0.011 0.989 26 H 0.010 0.990 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.437 0.563 30 H 0.429 0.571 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.434 0.566 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.653 -21.129 0.002 30.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.035 4.035 10 C -0.144 4.144 11 C 0.303 3.697 12 O -0.462 6.462 13 N -0.260 5.260 14 N -0.277 5.277 15 C 0.095 3.905 16 C -0.188 4.188 17 C -0.090 4.090 18 C -0.132 4.132 19 C -0.095 4.095 20 C 0.379 3.621 21 O -0.444 6.444 22 O -0.312 6.312 23 C -0.167 4.167 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.282 0.718 30 H 0.271 0.729 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.296 0.704 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 21.466 -20.037 0.005 29.365 hybrid contribution 0.725 1.352 -0.021 1.534 sum 22.191 -18.685 -0.015 29.010 Atomic orbital electron populations 1.70016 1.07726 1.28030 1.52536 1.25770 0.95451 1.02732 0.94441 0.85872 0.79264 0.79788 0.79022 1.19542 1.20634 1.18563 1.21407 0.91073 0.93836 1.50116 0.92592 1.19250 0.94050 0.93585 0.96608 1.21461 0.86423 1.00360 1.06184 1.21597 0.91151 0.81985 0.74999 1.90677 1.70924 1.32837 1.51801 1.44913 0.94649 1.10243 1.76209 1.43468 0.93626 1.07120 1.83529 1.17662 0.90295 0.85400 0.97116 1.21124 1.01144 0.90774 1.05755 1.21289 0.93612 0.98399 0.95674 1.21522 0.94704 0.97190 0.99739 1.18749 0.88678 0.94692 1.07429 1.20982 0.89147 0.80982 0.71023 1.90892 1.70662 1.34842 1.48022 1.84505 1.28778 1.33035 1.84925 1.20431 0.91629 0.98371 1.06318 0.92427 0.97059 0.97172 0.86779 0.86792 0.71767 0.72915 0.83689 0.81392 0.82473 0.70416 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.94 45.89 27.47 68.60 1.88 47.77 16 4 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 7 C -0.53 -29.07 9.66 25.60 0.25 -28.82 16 8 H 0.06 3.22 7.99 -2.91 -0.02 3.20 16 9 C 0.00 0.15 3.33 29.84 0.10 0.25 16 10 C -0.10 -3.47 5.64 29.85 0.17 -3.30 16 11 C 0.51 16.63 7.95 87.66 0.70 17.33 16 12 O -0.58 -24.26 15.82 -3.05 -0.05 -24.31 16 13 N -0.51 -11.84 6.22 -173.53 -1.08 -12.92 16 14 N -0.55 -12.87 6.45 -51.45 -0.33 -13.21 16 15 C 0.20 3.84 6.71 38.17 0.26 4.10 16 16 C -0.16 -2.29 9.48 22.45 0.21 -2.08 16 17 C -0.07 -0.74 10.02 22.21 0.22 -0.51 16 18 C -0.11 -1.37 9.61 22.55 0.22 -1.15 16 19 C -0.09 -1.66 5.87 -20.11 -0.12 -1.78 16 20 C 0.53 9.81 8.27 70.34 0.58 10.39 16 21 O -0.55 -14.14 17.13 19.96 0.34 -13.80 16 22 O -0.50 -5.23 12.68 -56.19 -0.71 -5.94 16 23 C -0.14 -2.94 9.44 22.68 0.21 -2.73 16 24 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 25 H 0.01 0.55 7.16 -2.39 -0.02 0.53 16 26 H 0.01 0.49 7.53 -2.39 -0.02 0.47 16 27 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 29 H 0.44 6.75 6.59 -213.32 -1.41 5.34 16 30 H 0.43 11.10 8.01 -213.32 -1.71 9.39 16 31 H 0.15 1.39 6.19 -2.91 -0.02 1.37 16 32 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 33 H 0.16 1.25 7.60 -2.91 -0.02 1.23 16 34 H 0.43 0.79 9.11 -74.05 -0.67 0.11 16 35 H 0.13 2.83 7.65 -2.91 -0.02 2.80 16 Total: -1.00 -78.53 312.41 0.94 -77.59 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -2.68 Total: 9.38 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 3.26 Total: -7.04 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.11 Total: -83.65 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.42 Total: -44.05 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -78.53 0.94 -77.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.843 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds