Wall clock time and date at job start Tue Mar 31 2020 00:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00087 * 2 1 4 4 H 1.48503 * 109.46848 * 239.99664 * 3 2 1 5 5 H 1.48489 * 109.47413 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47036 * 120.00263 * 3 2 1 7 7 C 1.37878 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46900 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00530 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99945 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00094 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47175 * 180.02562 * 14 13 11 16 16 C 1.38356 * 119.45826 * 94.99776 * 15 14 13 17 17 C 1.38344 * 119.31234 * 180.02562 * 16 15 14 18 18 C 1.40079 * 118.28070 * 0.28031 * 17 16 15 19 19 C 1.47720 * 120.56133 * 179.70387 * 18 17 16 20 20 O 1.21470 * 120.00237 * 359.97438 * 19 18 17 21 21 O 1.34705 * 119.99761 * 179.97438 * 19 18 17 22 22 C 1.39567 * 118.87209 * 359.45202 * 18 17 16 23 23 N 1.31688 * 120.55808 * 0.55866 * 22 18 17 24 24 H 0.97005 * 119.99716 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47008 * 59.99956 * 9 7 2 26 26 H 1.09004 * 109.47133 * 300.00062 * 9 7 2 27 27 H 1.08994 * 109.46708 * 60.00208 * 10 9 7 28 28 H 1.08997 * 109.46751 * 300.00167 * 10 9 7 29 29 H 0.96998 * 120.00138 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47824 * 60.00206 * 14 13 11 31 31 H 1.08997 * 109.47274 * 299.99551 * 14 13 11 32 32 H 1.08003 * 120.34275 * 0.04528 * 16 15 14 33 33 H 1.08002 * 120.85636 * 179.97438 * 17 16 15 34 34 H 0.96702 * 117.00071 * 180.02562 * 21 19 18 35 35 H 1.07996 * 119.72506 * 180.27735 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4916 -4.9672 0.0001 12 8 0.2788 -4.9672 0.0000 13 7 2.1654 -6.1344 -0.0003 14 6 1.4329 -7.4031 -0.0003 15 6 2.4122 -8.5486 -0.0001 16 6 2.7745 -9.1339 1.2000 17 6 3.6740 -10.1849 1.1967 18 6 4.1901 -10.6129 -0.0333 19 6 5.1589 -11.7264 -0.0948 20 8 5.5149 -12.2789 0.9267 21 8 5.6475 -12.1291 -1.2837 22 6 3.7693 -9.9730 -1.2000 23 7 2.9103 -8.9764 -1.1445 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 3.1354 -6.1345 -0.0014 30 1 0.8059 -7.4608 -0.8900 31 1 0.8066 -7.4610 0.8899 32 1 2.3590 -8.7742 2.1298 33 1 3.9745 -10.6598 2.1190 34 1 6.2785 -12.8618 -1.2737 35 1 4.1549 -10.2947 -2.1561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:00 Heat of formation + Delta-G solvation = -103.368716 kcal Electronic energy + Delta-G solvation = -19784.914104 eV Core-core repulsion = 16361.554353 eV Total energy + Delta-G solvation = -3423.359751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27537 -40.07895 -39.01928 -36.65175 -34.99711 -33.44804 -33.08444 -32.14403 -30.91880 -27.88700 -25.58103 -24.32148 -23.79539 -21.85482 -21.38934 -19.76393 -18.86042 -17.98706 -17.17418 -16.84143 -16.40023 -16.20690 -15.71595 -15.34939 -15.08693 -14.70807 -14.44294 -14.06034 -13.72895 -13.62403 -13.17393 -13.05898 -12.43236 -12.15428 -12.12708 -11.96938 -11.34831 -11.16790 -10.90557 -10.62177 -10.51393 -10.00913 -9.95332 -9.82287 -9.66305 -9.18258 -9.01677 -8.89131 -8.31226 -5.95480 -3.99924 -0.10108 0.69736 1.95252 2.40061 3.10740 3.21012 3.35045 3.39733 3.41346 3.58548 3.80131 4.15009 4.25726 4.31179 4.48236 4.65927 4.74410 5.16960 5.22119 5.39398 5.42087 5.52428 5.61126 5.75271 5.89894 5.99445 6.21948 6.23869 6.56876 6.88185 7.27979 7.39489 7.74265 7.79537 7.86510 8.07548 8.38725 8.71930 9.08291 9.63516 11.15418 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037844 B = 0.002531 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.704372 B =11058.541229 C =11364.106221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.531 6.531 13 N -0.738 5.738 14 C 0.165 3.835 15 C 0.152 3.848 16 C -0.164 4.164 17 C -0.009 4.009 18 C -0.185 4.185 19 C 0.535 3.465 20 O -0.511 6.511 21 O -0.509 6.509 22 C 0.164 3.836 23 N -0.475 5.475 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.398 0.602 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.418 0.582 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.751 -25.040 -0.100 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.406 6.406 13 N -0.393 5.393 14 C 0.040 3.960 15 C 0.015 3.985 16 C -0.185 4.185 17 C -0.035 4.035 18 C -0.189 4.189 19 C 0.379 3.621 20 O -0.400 6.400 21 O -0.322 6.322 22 C 0.005 3.995 23 N -0.183 5.183 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.232 0.768 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.278 0.722 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.213 -24.307 -0.596 26.001 hybrid contribution 1.702 -0.162 0.778 1.879 sum 10.915 -24.469 0.182 26.793 Atomic orbital electron populations 1.69987 1.06048 1.26705 1.50085 1.25023 0.94834 0.99220 0.95303 0.86646 0.79539 0.83166 0.78538 1.20245 1.21292 1.20271 1.21183 0.92896 0.91019 1.51535 0.92658 1.18905 0.93166 0.89310 0.98677 1.21874 1.00755 0.91624 1.02608 1.21608 0.88657 0.85342 0.74218 1.90683 1.14396 1.87427 1.48099 1.46135 1.10090 1.04633 1.78464 1.20134 0.91727 0.79863 1.04230 1.21731 0.93535 0.94794 0.88462 1.22095 0.99166 0.97137 1.00074 1.21767 0.91320 0.92902 0.97499 1.20129 1.02531 0.99726 0.96473 1.20582 0.78935 0.81745 0.80873 1.90914 1.58062 1.55350 1.35711 1.84537 1.59704 1.53921 1.34003 1.23285 0.89699 0.88569 0.97945 1.67702 1.09552 1.12208 1.28877 0.92884 0.95747 0.95787 0.90170 0.90102 0.76804 0.89406 0.89567 0.83049 0.83025 0.72243 0.80888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.56 5.64 -27.88 -0.16 -2.72 16 11 C 0.51 9.58 7.83 -10.99 -0.09 9.49 16 12 O -0.53 -12.18 15.98 5.56 0.09 -12.09 16 13 N -0.74 -10.01 5.55 -61.48 -0.34 -10.35 16 14 C 0.16 1.94 5.97 -5.19 -0.03 1.91 16 15 C 0.15 1.49 6.15 -82.50 -0.51 0.98 16 16 C -0.16 -1.27 9.70 -39.50 -0.38 -1.66 16 17 C -0.01 -0.07 9.72 -38.85 -0.38 -0.45 16 18 C -0.19 -1.49 5.89 -104.84 -0.62 -2.10 16 19 C 0.54 4.21 8.28 34.60 0.29 4.50 16 20 O -0.51 -5.40 17.21 -19.24 -0.33 -5.73 16 21 O -0.51 -2.52 12.71 -40.51 -0.51 -3.03 16 22 C 0.16 1.36 10.79 -17.12 -0.18 1.17 16 23 N -0.47 -4.93 10.25 -9.12 -0.09 -5.02 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.40 4.48 8.46 -40.82 -0.35 4.14 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 32 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.15 0.96 7.74 -52.49 -0.41 0.56 16 34 H 0.42 0.26 9.11 45.56 0.42 0.67 16 35 H 0.17 1.07 7.62 -52.49 -0.40 0.67 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -36.71 320.34 -6.46 -43.18 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -3.23 Total: -0.09 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.59 Total: -1.66 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.30 Total: -42.02 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.76 Total: -20.85 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.71 -6.46 -43.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.193 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds