Wall clock time and date at job start Tue Mar 31 2020 00:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00087 * 2 1 4 4 H 1.48503 * 109.46848 * 239.99664 * 3 2 1 5 5 H 1.48489 * 109.47413 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47036 * 120.00263 * 3 2 1 7 7 C 1.37878 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99985 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46900 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00530 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99945 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00094 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47175 * 180.02562 * 14 13 11 16 16 C 1.38356 * 119.45826 * 94.99776 * 15 14 13 17 17 C 1.38344 * 119.31234 * 180.02562 * 16 15 14 18 18 C 1.40079 * 118.28070 * 0.28031 * 17 16 15 19 19 C 1.47720 * 120.56133 * 179.70387 * 18 17 16 20 20 O 1.21470 * 120.00237 * 359.97438 * 19 18 17 21 21 O 1.34705 * 119.99761 * 179.97438 * 19 18 17 22 22 C 1.39567 * 118.87209 * 359.45202 * 18 17 16 23 23 N 1.31688 * 120.55808 * 0.55866 * 22 18 17 24 24 H 0.97005 * 119.99716 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47008 * 59.99956 * 9 7 2 26 26 H 1.09004 * 109.47133 * 300.00062 * 9 7 2 27 27 H 1.08994 * 109.46708 * 60.00208 * 10 9 7 28 28 H 1.08997 * 109.46751 * 300.00167 * 10 9 7 29 29 H 0.96998 * 120.00138 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47824 * 60.00206 * 14 13 11 31 31 H 1.08997 * 109.47274 * 299.99551 * 14 13 11 32 32 H 1.08003 * 120.34275 * 0.04528 * 16 15 14 33 33 H 1.08002 * 120.85636 * 179.97438 * 17 16 15 34 34 H 0.96702 * 117.00071 * 180.02562 * 21 19 18 35 35 H 1.07996 * 119.72506 * 180.27735 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4916 -4.9672 0.0001 12 8 0.2788 -4.9672 0.0000 13 7 2.1654 -6.1344 -0.0003 14 6 1.4329 -7.4031 -0.0003 15 6 2.4122 -8.5486 -0.0001 16 6 2.7745 -9.1339 1.2000 17 6 3.6740 -10.1849 1.1967 18 6 4.1901 -10.6129 -0.0333 19 6 5.1589 -11.7264 -0.0948 20 8 5.5149 -12.2789 0.9267 21 8 5.6475 -12.1291 -1.2837 22 6 3.7693 -9.9730 -1.2000 23 7 2.9103 -8.9764 -1.1445 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 3.1354 -6.1345 -0.0014 30 1 0.8059 -7.4608 -0.8900 31 1 0.8066 -7.4610 0.8899 32 1 2.3590 -8.7742 2.1298 33 1 3.9745 -10.6598 2.1190 34 1 6.2785 -12.8618 -1.2737 35 1 4.1549 -10.2947 -2.1561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:59 Heat of formation + Delta-G solvation = -131.727526 kcal Electronic energy + Delta-G solvation = -19786.143835 eV Core-core repulsion = 16361.554353 eV Total energy + Delta-G solvation = -3424.589481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.92627 -40.87137 -40.32317 -37.18577 -36.18900 -35.51037 -33.77568 -33.26576 -32.60444 -29.03625 -27.29694 -25.07394 -24.62419 -23.38967 -22.29485 -21.26645 -19.42552 -18.89025 -18.55072 -17.79938 -17.49725 -17.26792 -16.77849 -16.51938 -16.42730 -16.26123 -15.40956 -14.96342 -14.71856 -14.57976 -14.24286 -14.16944 -14.10302 -13.53434 -13.24335 -13.14279 -12.75751 -12.66033 -12.49745 -11.98678 -11.88435 -11.62175 -11.30542 -11.17451 -10.90411 -10.65470 -10.54178 -10.29360 -10.13787 -8.15995 -6.29783 -0.76160 0.09210 1.31607 1.43573 1.47840 1.55555 1.71443 1.91359 2.18826 2.45111 2.72583 2.98900 3.16941 3.48887 3.66048 3.72970 3.97631 4.10125 4.19084 4.42159 4.52982 4.59255 4.62657 4.68272 4.90603 4.93467 5.10114 5.33873 5.38272 5.48525 5.52721 5.66563 5.88014 6.19972 6.53461 6.68764 6.88565 6.89257 7.30985 7.40301 8.96380 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037844 B = 0.002531 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.704372 B =11058.541229 C =11364.106221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.517 3.483 12 O -0.583 6.583 13 N -0.713 5.713 14 C 0.166 3.834 15 C 0.141 3.859 16 C -0.154 4.154 17 C -0.008 4.008 18 C -0.186 4.186 19 C 0.543 3.457 20 O -0.542 6.542 21 O -0.501 6.501 22 C 0.164 3.836 23 N -0.499 5.499 24 H 0.263 0.737 25 H -0.018 1.018 26 H -0.015 1.015 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.414 0.586 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.438 0.562 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.472 -25.832 0.102 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.158 4.158 11 C 0.305 3.695 12 O -0.463 6.463 13 N -0.367 5.367 14 C 0.042 3.958 15 C 0.004 3.996 16 C -0.174 4.174 17 C -0.033 4.033 18 C -0.189 4.189 19 C 0.388 3.612 20 O -0.433 6.433 21 O -0.315 6.315 22 C 0.005 3.995 23 N -0.208 5.208 24 H 0.071 0.929 25 H 0.001 0.999 26 H 0.004 0.996 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.250 0.750 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.301 0.699 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.011 -25.158 -0.415 27.881 hybrid contribution 0.889 -0.059 0.667 1.113 sum 12.900 -25.216 0.253 28.326 Atomic orbital electron populations 1.70169 1.08259 1.27838 1.51444 1.26127 0.95729 1.03897 0.94700 0.85387 0.78059 0.77438 0.79438 1.18794 1.21386 1.18682 1.21695 0.93988 0.91673 1.50812 0.90657 1.18697 0.93729 0.92345 0.94853 1.21635 0.99347 0.89960 1.04904 1.21284 0.87783 0.86373 0.74023 1.90670 1.16482 1.88194 1.50928 1.45788 1.10801 1.04051 1.76067 1.20156 0.92182 0.79525 1.03915 1.21408 0.94035 0.94825 0.89299 1.22223 0.98549 0.96608 0.99996 1.21975 0.90818 0.92558 0.97984 1.20269 1.02374 0.99649 0.96656 1.20491 0.78466 0.81250 0.81026 1.90911 1.59200 1.56381 1.36838 1.84499 1.59938 1.54674 1.32387 1.23516 0.89167 0.87973 0.98855 1.67626 1.10447 1.13306 1.29442 0.92870 0.99912 0.99647 0.87523 0.87950 0.74996 0.91038 0.88722 0.81077 0.81694 0.69938 0.79149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.40 13.29 21.45 0.28 -59.11 16 2 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.59 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.04 2.29 4.26 29.85 0.13 2.42 16 10 C -0.12 -4.67 5.64 29.85 0.17 -4.50 16 11 C 0.52 19.33 7.83 87.66 0.69 20.02 16 12 O -0.58 -27.79 15.98 -3.03 -0.05 -27.84 16 13 N -0.71 -18.52 5.55 -466.80 -2.59 -21.11 16 14 C 0.17 3.80 5.97 85.64 0.51 4.31 16 15 C 0.14 2.54 6.15 42.57 0.26 2.81 16 16 C -0.15 -2.03 9.70 22.32 0.22 -1.81 16 17 C -0.01 -0.10 9.72 22.74 0.22 0.12 16 18 C -0.19 -2.59 5.89 -20.00 -0.12 -2.71 16 19 C 0.54 7.40 8.28 70.33 0.58 7.98 16 20 O -0.54 -10.51 17.21 19.93 0.34 -10.17 16 21 O -0.50 -3.68 12.71 -56.15 -0.71 -4.40 16 22 C 0.16 2.40 10.79 85.04 0.92 3.31 16 23 N -0.50 -9.64 10.25 -182.78 -1.87 -11.52 16 24 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 25 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 26 H -0.01 -0.93 8.10 -2.38 -0.02 -0.95 16 27 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 28 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.41 8.37 8.46 -92.71 -0.78 7.58 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 31 H 0.09 2.03 8.04 -2.39 -0.02 2.01 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.17 1.69 7.74 -2.91 -0.02 1.66 16 34 H 0.44 -0.59 9.11 -74.06 -0.67 -1.27 16 35 H 0.19 1.94 7.62 -2.91 -0.02 1.92 16 Total: -1.00 -82.21 320.34 1.38 -80.83 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -0.32 Total: 5.69 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.27 Total: 1.41 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -4.18 Total: -91.74 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.42 Total: -42.40 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -82.21 1.38 -80.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.897 kcal (2) G-P(sol) polarization free energy of solvation -82.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds