Wall clock time and date at job start Tue Mar 31 2020 00:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00186 * 2 1 4 4 H 1.48497 * 109.47219 * 240.00020 * 3 2 1 5 5 H 1.48502 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47044 * 120.00144 * 3 2 1 7 7 C 1.37881 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00289 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47262 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46871 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00323 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99529 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00057 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.46704 * 324.99180 * 14 13 11 16 16 C 1.50693 * 109.47796 * 84.99335 * 14 13 11 17 17 O 1.20837 * 119.99516 * 0.02562 * 16 14 13 18 18 O 1.34221 * 120.00514 * 180.02562 * 16 14 13 19 19 C 1.50707 * 109.47362 * 205.00007 * 14 13 11 20 20 C 1.38227 * 119.62059 * 155.01832 * 19 14 13 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 14 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 334.99261 * 19 14 13 25 25 H 0.96999 * 119.99386 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46892 * 60.00799 * 9 7 2 27 27 H 1.08998 * 109.47598 * 300.00804 * 9 7 2 28 28 H 1.08995 * 109.47011 * 60.00895 * 10 9 7 29 29 H 1.08991 * 109.47379 * 300.00392 * 10 9 7 30 30 H 0.97000 * 120.00329 * 359.97438 * 13 11 10 31 31 H 0.96704 * 117.00277 * 179.97438 * 18 16 14 32 32 H 1.07997 * 120.41915 * 359.97438 * 20 19 14 33 33 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 34 34 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 35 35 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0021 13 7 2.1655 -6.1344 -0.0008 14 6 1.4330 -7.4031 -0.0019 15 1 0.5217 -7.2970 0.5867 16 6 1.0760 -7.7758 -1.4177 17 8 1.4006 -7.0557 -2.3322 18 8 0.3975 -8.9076 -1.6630 19 6 2.2964 -8.4822 0.5992 20 6 1.7032 -9.5891 1.1769 21 6 2.5066 -10.5785 1.7222 22 6 3.8825 -10.4122 1.6747 23 6 4.4037 -9.2788 1.0803 24 7 3.6088 -8.3598 0.5674 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6045 0.8895 29 1 2.8719 -3.6044 -0.8904 30 1 3.1355 -6.1344 -0.0004 31 1 0.1910 -9.1043 -2.5871 32 1 0.6276 -9.6836 1.1998 33 1 2.0712 -11.4561 2.1768 34 1 4.5386 -11.1612 2.0929 35 1 5.4742 -9.1437 1.0357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067448.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:20 Heat of formation + Delta-G solvation = -93.750624 kcal Electronic energy + Delta-G solvation = -20838.888466 eV Core-core repulsion = 17415.945787 eV Total energy + Delta-G solvation = -3422.942679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11484 -39.94537 -38.89354 -36.19765 -34.96959 -33.40631 -32.77099 -31.96397 -30.81367 -28.12741 -25.48548 -23.93821 -23.43820 -22.13938 -20.83816 -19.72616 -18.33790 -17.53366 -17.09311 -16.69355 -16.62267 -16.12842 -15.55760 -15.41000 -14.87927 -14.52876 -14.36485 -14.24334 -13.59235 -13.30948 -13.21161 -12.83707 -12.17166 -12.16537 -12.04363 -11.55672 -11.11761 -10.89941 -10.85092 -10.57932 -10.26021 -9.90991 -9.89207 -9.64372 -9.45829 -9.19900 -9.03127 -8.98120 -8.26647 -5.90975 -3.95001 0.63192 0.90218 2.12043 2.62057 3.24762 3.34833 3.38836 3.42957 3.45203 3.56646 3.81747 4.36628 4.49543 4.52390 4.69375 4.77232 4.99177 5.10975 5.16494 5.35424 5.43908 5.64305 5.74009 5.78801 6.24294 6.28876 6.32779 6.39229 6.50151 6.94754 7.55039 7.78939 7.80646 7.85522 7.92106 8.12475 8.43471 8.71927 9.12976 9.68046 11.20068 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.003619 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.340117 B = 7735.045637 C = 8291.918000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.126 4.126 11 C 0.518 3.482 12 O -0.533 6.533 13 N -0.714 5.714 14 C 0.213 3.787 15 H 0.139 0.861 16 C 0.470 3.530 17 O -0.488 6.488 18 O -0.517 6.517 19 C 0.120 3.880 20 C -0.142 4.142 21 C -0.072 4.072 22 C -0.168 4.168 23 C 0.105 3.895 24 N -0.473 5.473 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.415 0.585 31 H 0.410 0.590 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 -25.625 3.123 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.166 4.166 11 C 0.308 3.692 12 O -0.408 6.408 13 N -0.370 5.370 14 C 0.103 3.897 15 H 0.157 0.843 16 C 0.307 3.693 17 O -0.372 6.372 18 O -0.329 6.329 19 C -0.018 4.018 20 C -0.162 4.162 21 C -0.099 4.099 22 C -0.188 4.188 23 C -0.053 4.053 24 N -0.183 5.183 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.253 0.747 31 H 0.269 0.731 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.301 -24.417 2.878 25.381 hybrid contribution 0.420 -0.084 -0.315 0.531 sum 6.721 -24.502 2.563 25.536 Atomic orbital electron populations 1.69992 1.06055 1.26640 1.50236 1.25022 0.94829 0.99204 0.95336 0.86640 0.79525 0.83140 0.78546 1.20239 1.21329 1.20258 1.21190 0.92948 0.90976 1.51355 0.92579 1.18912 0.93170 0.89291 0.98665 1.21864 1.00781 0.91110 1.02860 1.21744 0.88671 0.85496 0.73306 1.90661 1.14462 1.87452 1.48189 1.45961 1.11084 1.02804 1.77148 1.18938 0.96935 0.84048 0.89771 0.84326 1.23819 0.74523 0.78189 0.92739 1.90763 1.49983 1.50483 1.46009 1.84488 1.69735 1.41920 1.36738 1.20644 0.90608 0.93987 0.96573 1.21898 1.02101 0.93987 0.98253 1.21608 0.93627 0.98406 0.96210 1.22230 0.96163 0.99564 1.00840 1.22767 0.99989 0.89328 0.93170 1.67209 1.04395 1.30141 1.16532 0.92937 0.95736 0.95771 0.89942 0.89797 0.74712 0.73134 0.83811 0.84267 0.84428 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.96 13.29 55.43 0.74 -27.22 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -15.33 9.11 -34.44 -0.31 -15.64 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 11 C 0.52 10.66 7.66 -10.98 -0.08 10.57 16 12 O -0.53 -12.85 15.64 5.56 0.09 -12.76 16 13 N -0.71 -11.55 4.58 -56.07 -0.26 -11.81 16 14 C 0.21 2.96 2.73 -70.24 -0.19 2.77 16 15 H 0.14 1.88 7.55 -51.93 -0.39 1.49 16 16 C 0.47 6.86 7.65 36.00 0.28 7.14 16 17 O -0.49 -9.03 17.08 -18.76 -0.32 -9.35 16 18 O -0.52 -5.35 13.27 -39.23 -0.52 -5.87 16 19 C 0.12 1.36 5.82 -82.58 -0.48 0.88 16 20 C -0.14 -1.22 9.69 -39.44 -0.38 -1.60 16 21 C -0.07 -0.48 10.18 -39.28 -0.40 -0.88 16 22 C -0.17 -1.07 10.11 -39.44 -0.40 -1.47 16 23 C 0.10 0.86 11.18 -17.55 -0.20 0.67 16 24 N -0.47 -5.36 9.04 -9.47 -0.09 -5.44 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.02 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 30 H 0.42 6.06 7.63 -40.82 -0.31 5.75 16 31 H 0.41 2.61 9.10 45.56 0.41 3.02 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 34 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -38.33 318.27 -6.34 -44.67 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.21 Total: 3.81 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.54 Total: 2.09 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.39 Total: -44.47 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.75 Total: -27.99 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.33 -6.34 -44.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067448.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.080 kcal (2) G-P(sol) polarization free energy of solvation -38.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds