Wall clock time and date at job start Tue Mar 31 2020 00:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00186 * 2 1 4 4 H 1.48497 * 109.47219 * 240.00020 * 3 2 1 5 5 H 1.48502 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47044 * 120.00144 * 3 2 1 7 7 C 1.37881 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00289 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47262 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46871 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00323 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99529 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00057 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.46704 * 324.99180 * 14 13 11 16 16 C 1.50693 * 109.47796 * 84.99335 * 14 13 11 17 17 O 1.20837 * 119.99516 * 0.02562 * 16 14 13 18 18 O 1.34221 * 120.00514 * 180.02562 * 16 14 13 19 19 C 1.50707 * 109.47362 * 205.00007 * 14 13 11 20 20 C 1.38227 * 119.62059 * 155.01832 * 19 14 13 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 14 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 334.99261 * 19 14 13 25 25 H 0.96999 * 119.99386 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46892 * 60.00799 * 9 7 2 27 27 H 1.08998 * 109.47598 * 300.00804 * 9 7 2 28 28 H 1.08995 * 109.47011 * 60.00895 * 10 9 7 29 29 H 1.08991 * 109.47379 * 300.00392 * 10 9 7 30 30 H 0.97000 * 120.00329 * 359.97438 * 13 11 10 31 31 H 0.96704 * 117.00277 * 179.97438 * 18 16 14 32 32 H 1.07997 * 120.41915 * 359.97438 * 20 19 14 33 33 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 34 34 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 35 35 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2789 -4.9672 -0.0021 13 7 2.1655 -6.1344 -0.0008 14 6 1.4330 -7.4031 -0.0019 15 1 0.5217 -7.2970 0.5867 16 6 1.0760 -7.7758 -1.4177 17 8 1.4006 -7.0557 -2.3322 18 8 0.3975 -8.9076 -1.6630 19 6 2.2964 -8.4822 0.5992 20 6 1.7032 -9.5891 1.1769 21 6 2.5066 -10.5785 1.7222 22 6 3.8825 -10.4122 1.6747 23 6 4.4037 -9.2788 1.0803 24 7 3.6088 -8.3598 0.5674 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.8718 -3.6045 0.8895 29 1 2.8719 -3.6044 -0.8904 30 1 3.1355 -6.1344 -0.0004 31 1 0.1910 -9.1043 -2.5871 32 1 0.6276 -9.6836 1.1998 33 1 2.0712 -11.4561 2.1768 34 1 4.5386 -11.1612 2.0929 35 1 5.4742 -9.1437 1.0357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067448.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:19 Heat of formation + Delta-G solvation = -123.400001 kcal Electronic energy + Delta-G solvation = -20840.174159 eV Core-core repulsion = 17415.945787 eV Total energy + Delta-G solvation = -3424.228373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11855 -40.80781 -40.42972 -37.30320 -36.23664 -35.55783 -33.40498 -33.32661 -32.46420 -29.29287 -27.44068 -24.68110 -24.24274 -23.79983 -22.13581 -21.29942 -19.38939 -19.00727 -18.21151 -18.16460 -17.60017 -17.20777 -16.82478 -16.58236 -16.37458 -16.31198 -15.63928 -15.06091 -14.82737 -14.41209 -14.20028 -14.17285 -13.92264 -13.75694 -13.25707 -12.78351 -12.75011 -12.61072 -12.50278 -12.10208 -11.93759 -11.66736 -11.34014 -10.95996 -10.84646 -10.65928 -10.55163 -10.37661 -10.00835 -8.17649 -6.31827 -0.00808 0.34030 0.98907 1.36974 1.42294 1.47342 1.54929 1.82698 2.21668 2.44264 2.81959 2.94143 3.15042 3.65841 3.89961 4.04680 4.08942 4.16221 4.21542 4.27325 4.48794 4.51727 4.55078 4.83072 5.00725 5.11674 5.19879 5.26402 5.43014 5.49069 5.61617 5.73156 5.84282 6.17337 6.41499 6.80163 6.84940 6.90098 7.16344 7.37966 8.95006 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.003619 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.340117 B = 7735.045637 C = 8291.918000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.044 3.956 10 C -0.118 4.118 11 C 0.520 3.480 12 O -0.578 6.578 13 N -0.696 5.696 14 C 0.207 3.793 15 H 0.138 0.862 16 C 0.475 3.525 17 O -0.536 6.536 18 O -0.498 6.498 19 C 0.095 3.905 20 C -0.145 4.145 21 C -0.070 4.070 22 C -0.154 4.154 23 C 0.090 3.910 24 N -0.505 5.505 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.011 1.011 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.424 0.576 31 H 0.429 0.571 32 H 0.156 0.844 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.125 -27.461 4.111 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.093 0.907 9 C 0.006 3.994 10 C -0.157 4.157 11 C 0.310 3.690 12 O -0.457 6.457 13 N -0.351 5.351 14 C 0.099 3.901 15 H 0.155 0.845 16 C 0.315 3.685 17 O -0.425 6.425 18 O -0.311 6.311 19 C -0.042 4.042 20 C -0.165 4.165 21 C -0.095 4.095 22 C -0.174 4.174 23 C -0.067 4.067 24 N -0.215 5.215 25 H 0.072 0.928 26 H -0.001 1.001 27 H 0.007 0.993 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.263 0.737 31 H 0.291 0.709 32 H 0.174 0.826 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.661 -26.331 3.866 27.987 hybrid contribution -0.301 0.282 -0.599 0.727 sum 8.359 -26.050 3.267 27.552 Atomic orbital electron populations 1.70174 1.08295 1.27909 1.51317 1.26149 0.95767 1.03957 0.94526 0.85344 0.78042 0.77200 0.79471 1.18891 1.21167 1.18508 1.21673 0.94003 0.91586 1.51090 0.90665 1.18684 0.93599 0.92208 0.94874 1.21639 0.99506 0.89687 1.04884 1.21452 0.87933 0.86504 0.73132 1.90639 1.16204 1.88158 1.50733 1.45620 1.11460 1.02761 1.75228 1.19111 0.97493 0.83723 0.89815 0.84509 1.23914 0.73781 0.78324 0.92490 1.90746 1.52219 1.52180 1.47375 1.84432 1.68336 1.39780 1.38532 1.20322 0.90708 0.94297 0.98918 1.22090 1.03115 0.93524 0.97742 1.22047 0.93683 0.98658 0.95162 1.22650 0.96665 0.99178 0.98881 1.23256 1.00803 0.89539 0.93107 1.67081 1.04618 1.31902 1.17894 0.92801 1.00121 0.99296 0.87210 0.88275 0.73676 0.70857 0.82613 0.80910 0.80944 0.80057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.76 13.29 21.45 0.28 -60.47 16 2 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 3 Si 0.98 45.45 29.54 68.60 2.03 47.48 16 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 8 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 9 C 0.04 2.57 4.26 29.85 0.13 2.69 16 10 C -0.12 -5.17 5.64 29.85 0.17 -5.00 16 11 C 0.52 22.19 7.66 87.66 0.67 22.86 16 12 O -0.58 -29.51 15.64 -3.01 -0.05 -29.56 16 13 N -0.70 -22.94 4.58 -449.69 -2.06 -25.00 16 14 C 0.21 5.85 2.73 43.50 0.12 5.97 16 15 H 0.14 3.86 7.55 -2.38 -0.02 3.84 16 16 C 0.47 14.04 7.65 71.23 0.54 14.59 16 17 O -0.54 -20.46 17.08 21.93 0.37 -20.08 16 18 O -0.50 -9.87 13.27 -51.33 -0.68 -10.56 16 19 C 0.09 2.06 5.82 42.55 0.25 2.31 16 20 C -0.14 -2.18 9.69 22.36 0.22 -1.96 16 21 C -0.07 -0.66 10.18 22.47 0.23 -0.43 16 22 C -0.15 -1.37 10.11 22.36 0.23 -1.14 16 23 C 0.09 1.26 11.18 84.67 0.95 2.21 16 24 N -0.50 -10.82 9.04 -183.88 -1.66 -12.48 16 25 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 26 H -0.02 -1.30 8.10 -2.38 -0.02 -1.32 16 27 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 16 28 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 29 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 30 H 0.42 12.38 7.63 -92.71 -0.71 11.67 16 31 H 0.43 4.96 9.10 -74.05 -0.67 4.28 16 32 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 35 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -87.62 318.27 2.18 -85.43 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.24 Total: 15.07 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 4.19 Total: 10.17 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.44 Total: -97.95 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -0.35 Total: -60.20 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -87.62 2.18 -85.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067448.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.968 kcal (2) G-P(sol) polarization free energy of solvation -87.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds