Wall clock time and date at job start Mon Mar 30 2020 23:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99918 * 2 1 4 4 H 1.48502 * 109.46942 * 270.00114 * 3 2 1 5 5 H 1.48500 * 109.47262 * 29.99834 * 3 2 1 6 6 H 1.48499 * 109.46898 * 150.00300 * 3 2 1 7 7 C 1.37875 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00002 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99839 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.47191 * 180.02562 * 13 11 10 15 15 C 1.38831 * 120.00124 * 180.02562 * 14 13 11 16 16 C 1.38960 * 120.18014 * 5.59486 * 15 14 13 17 17 C 1.37948 * 120.06731 * 180.02562 * 16 15 14 18 18 C 1.38624 * 120.43864 * 0.02562 * 17 16 15 19 19 C 1.37724 * 120.36348 * 359.97438 * 18 17 16 20 20 C 1.39802 * 119.91697 * 359.97438 * 19 18 17 21 21 C 1.47288 * 120.21121 * 179.97438 * 20 19 18 22 22 O 1.21524 * 119.99977 * 174.14954 * 21 20 19 23 23 O 1.34763 * 120.00037 * 354.14255 * 21 20 19 24 24 H 0.97004 * 119.99879 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46354 * 60.00451 * 9 7 2 26 26 H 1.09000 * 109.46773 * 300.00659 * 9 7 2 27 27 H 0.96998 * 119.99880 * 0.02562 * 10 9 7 28 28 H 1.09006 * 109.46820 * 60.00503 * 13 11 10 29 29 H 1.08994 * 109.47398 * 300.01017 * 13 11 10 30 30 H 0.97000 * 120.00056 * 0.02562 * 14 13 11 31 31 H 1.08004 * 119.96512 * 0.29810 * 16 15 14 32 32 H 1.08006 * 119.77816 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.82044 * 179.97438 * 18 17 16 34 34 H 1.07997 * 120.04523 * 180.02562 * 19 18 17 35 35 H 0.96708 * 117.00050 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7331 -6.0287 -0.0006 14 7 2.0006 -7.2975 -0.0005 15 6 2.6948 -8.4998 -0.0004 16 6 4.0794 -8.5070 0.1167 17 6 4.7669 -9.7030 0.1159 18 6 4.0857 -10.9045 -0.0017 19 6 2.7135 -10.9183 -0.1187 20 6 2.0016 -9.7151 -0.1186 21 6 0.5341 -9.7222 -0.2440 22 8 -0.0899 -8.6849 -0.1370 23 8 -0.1167 -10.8789 -0.4775 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5566 -0.8904 26 1 0.6247 -2.5570 0.8896 27 1 3.1567 -3.4353 -0.0002 28 1 3.3604 -5.9709 0.8890 29 1 3.3592 -5.9711 -0.8909 30 1 1.0306 -7.2975 -0.0004 31 1 4.6176 -7.5755 0.2127 32 1 5.8431 -9.7032 0.2076 33 1 4.6339 -11.8350 -0.0015 34 1 2.1879 -11.8573 -0.2097 35 1 -1.0798 -10.8335 -0.5525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:05 Heat of formation + Delta-G solvation = -99.637068 kcal Electronic energy + Delta-G solvation = -20471.546142 eV Core-core repulsion = 17048.348207 eV Total energy + Delta-G solvation = -3423.197935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70933 -39.23756 -38.59275 -36.34879 -35.21344 -34.24160 -32.42171 -31.54940 -30.12870 -27.91547 -26.12390 -24.55884 -22.87427 -21.79112 -21.32809 -19.81586 -18.23186 -17.83829 -17.39197 -16.70077 -16.00257 -15.75230 -15.46707 -15.31050 -14.97522 -14.77629 -14.27415 -14.10375 -13.61540 -13.48202 -13.22900 -12.65131 -12.62352 -12.13441 -12.00636 -11.72364 -11.64981 -11.41590 -11.02594 -10.92319 -10.44008 -10.36269 -10.30138 -9.45573 -9.25725 -9.22283 -8.79579 -8.00396 -7.58860 -6.20528 -4.28216 0.68193 1.44945 2.49864 2.97952 3.17133 3.21846 3.22445 3.28681 3.31089 3.72604 4.05348 4.32769 4.64097 4.79082 4.96918 5.14859 5.15599 5.24110 5.32411 5.34350 5.37685 5.50331 5.73925 5.99474 6.15917 6.34491 6.38091 6.60736 7.10936 7.24623 7.30870 7.45044 7.59389 7.74130 7.91079 8.04420 8.49443 8.69280 8.95180 9.38261 10.89618 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031493 B = 0.003221 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.864117 B = 8690.315139 C = 9552.618078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.706 5.706 11 C 0.490 3.510 12 O -0.543 6.543 13 C 0.091 3.909 14 N -0.706 5.706 15 C 0.289 3.711 16 C -0.219 4.219 17 C -0.029 4.029 18 C -0.207 4.207 19 C -0.009 4.009 20 C -0.225 4.225 21 C 0.530 3.470 22 O -0.515 6.515 23 O -0.515 6.515 24 H 0.267 0.733 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.393 0.607 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.430 0.570 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 -21.574 -0.301 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.355 5.355 11 C 0.274 3.726 12 O -0.422 6.422 13 C -0.038 4.038 14 N -0.344 5.344 15 C 0.176 3.824 16 C -0.242 4.242 17 C -0.049 4.049 18 C -0.227 4.227 19 C -0.028 4.028 20 C -0.232 4.232 21 C 0.377 3.623 22 O -0.405 6.405 23 O -0.326 6.326 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.226 0.774 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.282 0.718 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 8.683 -21.070 -0.237 22.790 hybrid contribution -0.061 1.134 -0.052 1.137 sum 8.622 -19.935 -0.290 21.722 Atomic orbital electron populations 1.69978 1.06142 1.27406 1.48654 1.24964 0.94929 0.99523 0.94617 0.86390 0.79597 0.82527 0.78246 1.20428 1.20979 1.19702 1.21205 0.93288 0.90335 1.53530 0.91784 1.19162 0.88255 0.81761 0.97952 1.46392 1.11381 1.05737 1.71958 1.20279 0.89423 0.84618 0.78320 1.90711 1.16524 1.84380 1.50550 1.21292 0.95030 0.84048 1.03411 1.45581 1.12288 1.01130 1.75417 1.17798 0.91442 0.84904 0.88300 1.20703 0.91515 0.99503 1.12436 1.21141 0.99793 0.91825 0.92100 1.20820 0.93970 0.98170 1.09745 1.21155 0.94096 0.96347 0.91191 1.18357 0.88868 0.93625 1.22375 1.20816 0.88583 0.80683 0.72225 1.90686 1.68512 1.32829 1.48442 1.84538 1.27627 1.36177 1.84278 0.92371 0.95352 0.95349 0.77444 0.89117 0.89107 0.71766 0.85004 0.85561 0.85766 0.84865 0.72903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.55 -14.62 9.28 -34.44 -0.32 -14.94 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 10 N -0.71 -14.46 5.55 -61.48 -0.34 -14.80 16 11 C 0.49 9.75 7.90 -10.99 -0.09 9.67 16 12 O -0.54 -13.40 15.67 5.56 0.09 -13.31 16 13 C 0.09 1.29 5.42 -5.20 -0.03 1.27 16 14 N -0.71 -11.21 5.56 -59.62 -0.33 -11.54 16 15 C 0.29 3.87 6.65 -83.61 -0.56 3.32 16 16 C -0.22 -2.30 9.30 -39.42 -0.37 -2.67 16 17 C -0.03 -0.25 10.03 -39.55 -0.40 -0.65 16 18 C -0.21 -1.76 10.02 -39.63 -0.40 -2.15 16 19 C -0.01 -0.09 9.61 -39.18 -0.38 -0.47 16 20 C -0.23 -2.88 5.89 -104.82 -0.62 -3.50 16 21 C 0.53 7.22 8.25 34.41 0.28 7.51 16 22 O -0.51 -8.95 14.43 -19.28 -0.28 -9.23 16 23 O -0.51 -5.01 12.70 -40.66 -0.52 -5.52 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 28 H 0.09 1.05 7.72 -51.93 -0.40 0.65 16 29 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 30 H 0.43 8.15 3.95 -40.94 -0.16 7.99 16 31 H 0.13 1.16 6.72 -52.48 -0.35 0.81 16 32 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.13 1.07 7.62 -52.49 -0.40 0.67 16 35 H 0.41 2.32 9.11 45.56 0.42 2.73 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -35.06 311.16 -6.85 -41.91 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -2.89 Total: 11.88 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.99 Total: 5.57 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.06 Total: -51.63 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.71 Total: -28.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.06 -6.85 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.730 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds