Wall clock time and date at job start Mon Mar 30 2020 23:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99918 * 2 1 4 4 H 1.48502 * 109.46942 * 270.00114 * 3 2 1 5 5 H 1.48500 * 109.47262 * 29.99834 * 3 2 1 6 6 H 1.48499 * 109.46898 * 150.00300 * 3 2 1 7 7 C 1.37875 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00002 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99839 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.47191 * 180.02562 * 13 11 10 15 15 C 1.38831 * 120.00124 * 180.02562 * 14 13 11 16 16 C 1.38960 * 120.18014 * 5.59486 * 15 14 13 17 17 C 1.37948 * 120.06731 * 180.02562 * 16 15 14 18 18 C 1.38624 * 120.43864 * 0.02562 * 17 16 15 19 19 C 1.37724 * 120.36348 * 359.97438 * 18 17 16 20 20 C 1.39802 * 119.91697 * 359.97438 * 19 18 17 21 21 C 1.47288 * 120.21121 * 179.97438 * 20 19 18 22 22 O 1.21524 * 119.99977 * 174.14954 * 21 20 19 23 23 O 1.34763 * 120.00037 * 354.14255 * 21 20 19 24 24 H 0.97004 * 119.99879 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46354 * 60.00451 * 9 7 2 26 26 H 1.09000 * 109.46773 * 300.00659 * 9 7 2 27 27 H 0.96998 * 119.99880 * 0.02562 * 10 9 7 28 28 H 1.09006 * 109.46820 * 60.00503 * 13 11 10 29 29 H 1.08994 * 109.47398 * 300.01017 * 13 11 10 30 30 H 0.97000 * 120.00056 * 0.02562 * 14 13 11 31 31 H 1.08004 * 119.96512 * 0.29810 * 16 15 14 32 32 H 1.08006 * 119.77816 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.82044 * 179.97438 * 18 17 16 34 34 H 1.07997 * 120.04523 * 180.02562 * 19 18 17 35 35 H 0.96708 * 117.00050 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7331 -6.0287 -0.0006 14 7 2.0006 -7.2975 -0.0005 15 6 2.6948 -8.4998 -0.0004 16 6 4.0794 -8.5070 0.1167 17 6 4.7669 -9.7030 0.1159 18 6 4.0857 -10.9045 -0.0017 19 6 2.7135 -10.9183 -0.1187 20 6 2.0016 -9.7151 -0.1186 21 6 0.5341 -9.7222 -0.2440 22 8 -0.0899 -8.6849 -0.1370 23 8 -0.1167 -10.8789 -0.4775 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5566 -0.8904 26 1 0.6247 -2.5570 0.8896 27 1 3.1567 -3.4353 -0.0002 28 1 3.3604 -5.9709 0.8890 29 1 3.3592 -5.9711 -0.8909 30 1 1.0306 -7.2975 -0.0004 31 1 4.6176 -7.5755 0.2127 32 1 5.8431 -9.7032 0.2076 33 1 4.6339 -11.8350 -0.0015 34 1 2.1879 -11.8573 -0.2097 35 1 -1.0798 -10.8335 -0.5525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:04 Heat of formation + Delta-G solvation = -127.586713 kcal Electronic energy + Delta-G solvation = -20472.758129 eV Core-core repulsion = 17048.348207 eV Total energy + Delta-G solvation = -3424.409922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68286 -40.71420 -39.61384 -37.31961 -36.43969 -35.97554 -34.42616 -32.35700 -31.19517 -29.56540 -27.53384 -25.42238 -24.67394 -22.93078 -22.18349 -21.44891 -19.32301 -19.04359 -18.47271 -18.05819 -17.43050 -16.97114 -16.87986 -16.65165 -16.59200 -15.70244 -15.56825 -15.03439 -14.98949 -14.73631 -14.23370 -14.09986 -13.98377 -13.92592 -13.30531 -12.97159 -12.87660 -12.72399 -12.63768 -12.24544 -12.11725 -11.51863 -11.43482 -11.19074 -10.97429 -10.83338 -9.99166 -9.93884 -8.51609 -8.31122 -6.48450 -0.14647 0.67503 1.42909 1.45569 1.56800 1.57056 1.58773 2.02591 2.14791 2.37456 2.70031 2.94203 3.04105 3.76943 3.86360 4.14160 4.20039 4.27255 4.32238 4.49936 4.58702 4.70419 5.03701 5.07391 5.18455 5.19111 5.41538 5.46867 5.55391 5.61378 5.65203 5.80236 5.89411 6.25929 6.61021 6.66752 6.80307 6.99826 7.19794 7.37417 8.81249 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031493 B = 0.003221 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.864117 B = 8690.315139 C = 9552.618078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.555 4.555 8 H 0.089 0.911 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.486 3.514 12 O -0.598 6.598 13 C 0.107 3.893 14 N -0.733 5.733 15 C 0.262 3.738 16 C -0.223 4.223 17 C -0.021 4.021 18 C -0.197 4.197 19 C -0.013 4.013 20 C -0.250 4.250 21 C 0.528 3.472 22 O -0.563 6.563 23 O -0.502 6.502 24 H 0.269 0.731 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.414 0.586 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.414 0.586 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.656 -22.753 -0.261 26.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.593 4.593 8 H 0.107 0.893 9 C 0.142 3.858 10 N -0.347 5.347 11 C 0.272 3.728 12 O -0.480 6.480 13 C -0.020 4.020 14 N -0.371 5.371 15 C 0.152 3.848 16 C -0.245 4.245 17 C -0.040 4.040 18 C -0.216 4.216 19 C -0.031 4.031 20 C -0.257 4.257 21 C 0.377 3.623 22 O -0.457 6.457 23 O -0.315 6.315 24 H 0.077 0.923 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.251 0.749 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.262 0.738 31 H 0.168 0.832 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 12.941 -22.331 -0.202 25.811 hybrid contribution -1.363 1.286 -0.073 1.875 sum 11.578 -21.045 -0.275 24.022 Atomic orbital electron populations 1.70154 1.08427 1.28623 1.49956 1.26122 0.95773 1.04114 0.93804 0.85112 0.78528 0.76692 0.78608 1.19597 1.21155 1.17566 1.21625 0.94494 0.90274 1.52925 0.89289 1.18585 0.88740 0.84349 0.94125 1.46050 1.11563 1.04936 1.72176 1.21338 0.89754 0.85509 0.76156 1.90689 1.19534 1.85211 1.52536 1.21305 0.93171 0.81064 1.06460 1.45636 1.11712 1.02261 1.77522 1.18174 0.92715 0.84124 0.89815 1.21018 0.90205 1.01342 1.11954 1.21609 1.01585 0.90895 0.89883 1.21277 0.93366 0.99696 1.07303 1.21401 0.95012 0.95816 0.90875 1.18629 0.88481 0.94824 1.23743 1.21201 0.89363 0.80576 0.71182 1.90677 1.69585 1.34540 1.50905 1.84495 1.29144 1.34402 1.83447 0.92257 0.99537 0.99499 0.74923 0.85677 0.85851 0.73810 0.83168 0.81916 0.82563 0.83330 0.70992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.99 42.04 29.54 68.60 2.03 44.07 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.56 -29.97 9.28 25.60 0.24 -29.74 16 8 H 0.09 4.25 7.60 -2.91 -0.02 4.23 16 9 C 0.26 14.64 5.43 85.63 0.46 15.11 16 10 N -0.70 -28.95 5.55 -466.80 -2.59 -31.54 16 11 C 0.49 19.86 7.90 87.65 0.69 20.55 16 12 O -0.60 -31.49 15.67 -3.02 -0.05 -31.54 16 13 C 0.11 2.94 5.42 85.63 0.46 3.40 16 14 N -0.73 -23.54 5.56 -342.53 -1.90 -25.44 16 15 C 0.26 6.78 6.65 38.74 0.26 7.04 16 16 C -0.22 -3.97 9.30 22.37 0.21 -3.76 16 17 C -0.02 -0.26 10.03 22.29 0.22 -0.04 16 18 C -0.20 -2.51 10.02 22.24 0.22 -2.29 16 19 C -0.01 -0.22 9.61 22.53 0.22 0.00 16 20 C -0.25 -6.28 5.89 -19.99 -0.12 -6.39 16 21 C 0.53 14.89 8.25 70.20 0.58 15.47 16 22 O -0.56 -21.04 14.43 19.76 0.29 -20.75 16 23 O -0.50 -9.74 12.70 -56.74 -0.72 -10.46 16 24 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 27 H 0.41 13.42 8.32 -92.71 -0.77 12.65 16 28 H 0.13 2.55 7.72 -2.38 -0.02 2.53 16 29 H 0.12 2.56 8.13 -2.39 -0.02 2.54 16 30 H 0.41 16.61 3.95 -94.55 -0.37 16.23 16 31 H 0.15 2.01 6.72 -2.91 -0.02 1.99 16 32 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.15 2.03 7.62 -2.91 -0.02 2.01 16 35 H 0.43 4.90 9.11 -74.05 -0.67 4.22 16 Total: -1.00 -82.82 311.16 0.59 -82.23 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.66 Total: 30.07 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 3.91 Total: 19.88 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -4.21 Total: -113.50 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -0.48 Total: -62.75 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -82.82 0.59 -82.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.355 kcal (2) G-P(sol) polarization free energy of solvation -82.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds