Wall clock time and date at job start Tue Mar 31 2020 00:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48498 * 109.47030 * 271.24486 * 3 2 1 5 5 H 1.48500 * 109.46667 * 31.24374 * 3 2 1 6 6 H 1.48499 * 109.47094 * 151.24083 * 3 2 1 7 7 C 1.38979 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99797 * 351.17336 * 7 2 1 9 9 N 1.36971 * 119.99898 * 171.17402 * 7 2 1 10 10 C 1.46495 * 120.00385 * 308.53124 * 9 7 2 11 11 C 1.50709 * 109.47102 * 270.15511 * 10 9 7 12 12 O 1.20829 * 119.99716 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99877 * 179.97438 * 11 10 9 14 14 C 1.34779 * 119.99856 * 128.52947 * 9 7 2 15 15 O 1.21649 * 120.00034 * 183.31439 * 14 9 7 16 16 C 1.47188 * 119.99948 * 3.31684 * 14 9 7 17 17 C 1.46710 * 127.01859 * 353.26851 * 16 14 9 18 18 C 1.34447 * 106.38945 * 179.73968 * 17 16 14 19 19 N 1.36422 * 109.09024 * 359.97438 * 18 17 16 20 20 H 0.96996 * 124.82629 * 179.97438 * 19 18 17 21 21 C 1.34710 * 110.35863 * 0.02562 * 19 18 17 22 22 C 1.50696 * 125.90049 * 179.97438 * 21 19 18 23 23 C 1.53008 * 117.49784 * 8.74998 * 22 21 19 24 24 C 1.53002 * 117.50127 * 300.08813 * 22 21 19 25 25 H 0.96999 * 120.00353 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47244 * 30.15156 * 10 9 7 27 27 H 1.08999 * 109.47521 * 150.15332 * 10 9 7 28 28 H 0.96701 * 116.99375 * 179.97438 * 13 11 10 29 29 H 1.08000 * 126.80622 * 359.75976 * 17 16 14 30 30 H 1.08003 * 125.45476 * 179.97438 * 18 17 16 31 31 H 1.08995 * 115.55137 * 154.41435 * 22 21 19 32 32 H 1.08994 * 117.49765 * 359.97438 * 23 22 21 33 33 H 1.08999 * 117.49785 * 145.02284 * 23 22 21 34 34 H 1.08993 * 117.50372 * 214.97613 * 24 22 21 35 35 H 1.09002 * 117.49746 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4693 2.0616 -1.3997 5 1 1.4589 2.6448 0.7262 6 1 3.5586 1.4326 0.6736 7 6 2.0090 -1.2036 -0.0005 8 1 1.4786 -2.1334 0.1426 9 7 3.3666 -1.2105 -0.1825 10 6 3.9567 -0.5019 -1.3209 11 6 4.0436 -1.4336 -2.5023 12 8 3.6532 -2.5728 -2.4032 13 8 4.5549 -0.9979 -3.6644 14 6 4.1595 -1.8692 0.6857 15 8 5.3686 -1.8254 0.5589 16 6 3.5626 -2.6415 1.7873 17 6 2.1461 -2.6897 2.1661 18 6 2.0629 -3.5225 3.2184 19 7 3.3092 -3.9900 3.5170 20 1 3.5115 -4.6069 4.2376 21 6 4.2195 -3.4722 2.6697 22 6 5.7001 -3.7524 2.6841 23 6 6.2004 -4.8600 3.6136 24 6 6.4748 -3.3929 3.9536 25 1 -0.4850 0.8400 0.0004 26 1 3.3334 0.3543 -1.5786 27 1 4.9561 -0.1570 -1.0558 28 1 4.5903 -1.6321 -4.3935 29 1 1.3315 -2.1613 1.6932 30 1 1.1548 -3.7801 3.7432 31 1 6.2116 -3.6269 1.7299 32 1 5.4587 -5.3857 4.2148 33 1 7.0414 -5.4629 3.2709 34 1 7.4961 -3.0313 3.8345 35 1 5.9134 -2.9541 4.7785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:47 Heat of formation + Delta-G solvation = -29.676551 kcal Electronic energy + Delta-G solvation = -22083.133146 eV Core-core repulsion = 18662.968927 eV Total energy + Delta-G solvation = -3420.164219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63977 -39.64520 -38.04903 -36.56274 -35.48917 -34.71866 -31.96551 -30.56624 -28.47279 -27.89342 -24.96454 -22.81965 -22.31002 -21.69565 -20.63859 -19.75307 -18.65647 -17.54312 -17.34695 -16.81278 -15.84064 -15.51868 -15.23247 -14.89584 -14.73269 -14.05305 -13.88699 -13.53336 -13.25976 -12.89503 -12.43554 -12.27775 -11.99259 -11.86254 -11.52769 -11.50057 -11.31700 -10.99977 -10.90461 -10.47254 -10.39675 -10.15378 -9.96636 -9.83396 -9.13882 -8.67763 -7.97995 -7.74506 -7.34491 -6.40544 -4.19098 2.38364 2.92700 3.04998 3.18857 3.28398 3.29657 3.56268 3.70855 4.07261 4.12891 4.49109 4.60987 4.80621 5.01163 5.02514 5.21787 5.49895 5.66581 5.70176 5.78061 5.93945 5.94623 5.99578 6.13163 6.29668 6.33682 6.40623 6.82387 7.06350 7.08674 7.37453 7.60477 7.78714 8.06117 8.08965 8.32804 8.57518 8.99525 9.32713 9.67732 10.66640 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.007504 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.986351 B = 3730.469440 C = 4580.158935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.066 3.934 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.332 4.332 8 H 0.116 0.884 9 N -0.454 5.454 10 C 0.108 3.892 11 C 0.464 3.536 12 O -0.498 6.498 13 O -0.528 6.528 14 C 0.579 3.421 15 O -0.597 6.597 16 C -0.186 4.186 17 C -0.130 4.130 18 C -0.057 4.057 19 N -0.557 5.557 20 H 0.403 0.597 21 C 0.099 3.901 22 C -0.070 4.070 23 C -0.190 4.190 24 C -0.169 4.169 25 H 0.275 0.725 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.398 0.602 29 H 0.185 0.815 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.741 -4.279 4.515 9.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.141 4.141 3 Si 0.694 3.306 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.459 4.459 8 H 0.133 0.867 9 N -0.176 5.176 10 C -0.017 4.017 11 C 0.303 3.697 12 O -0.384 6.384 13 O -0.340 6.340 14 C 0.372 3.628 15 O -0.482 6.482 16 C -0.197 4.197 17 C -0.153 4.153 18 C -0.182 4.182 19 N -0.153 5.153 20 H 0.238 0.762 21 C -0.018 4.018 22 C -0.089 4.089 23 C -0.227 4.227 24 C -0.207 4.207 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.129 0.871 28 H 0.255 0.745 29 H 0.202 0.798 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.976 -4.248 4.902 9.526 hybrid contribution 0.122 0.198 -0.295 0.376 sum 7.099 -4.051 4.607 9.382 Atomic orbital electron populations 1.69642 1.05917 1.28098 1.46616 1.25507 0.95289 0.98409 0.94911 0.87002 0.81374 0.83580 0.78620 1.19787 1.20908 1.17993 1.19324 0.79754 0.95559 1.51293 0.86654 1.43096 1.07355 1.48573 1.18526 1.21321 1.02231 0.93878 0.84285 1.24598 0.72925 0.88668 0.83461 1.90668 1.43965 1.20469 1.83293 1.84586 1.77454 1.48896 1.23030 1.17500 0.84925 0.79508 0.80844 1.90581 1.14650 1.66393 1.76579 1.20167 0.93859 1.05239 1.00389 1.23449 0.96891 0.99179 0.95824 1.21816 0.87175 1.05547 1.03693 1.41358 1.07075 1.39046 1.27782 0.76200 1.19410 0.89414 0.99245 0.93723 1.20683 0.89181 1.01903 0.97136 1.23003 1.03592 0.91837 1.04290 1.22982 1.01537 0.97145 0.99009 0.91411 0.87882 0.87136 0.74465 0.79809 0.82279 0.84409 0.89659 0.88311 0.88281 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.24 13.96 55.50 0.77 -22.46 16 2 C 0.07 1.69 5.43 -17.46 -0.09 1.60 16 3 Si 0.87 19.79 24.98 -169.99 -4.25 15.55 16 4 H -0.27 -5.88 6.77 56.52 0.38 -5.50 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.33 -8.63 7.00 -14.98 -0.10 -8.73 16 8 H 0.12 3.20 5.78 -52.48 -0.30 2.90 16 9 N -0.45 -11.30 1.46 -117.39 -0.17 -11.47 16 10 C 0.11 2.42 4.73 -5.19 -0.02 2.39 16 11 C 0.46 9.96 8.40 36.01 0.30 10.26 16 12 O -0.50 -12.27 17.19 -18.75 -0.32 -12.59 16 13 O -0.53 -8.84 13.42 -39.26 -0.53 -9.37 16 14 C 0.58 14.42 7.62 -12.63 -0.10 14.32 16 15 O -0.60 -15.12 14.59 5.23 0.08 -15.04 16 16 C -0.19 -4.20 6.18 -102.99 -0.64 -4.84 16 17 C -0.13 -2.75 9.17 -37.50 -0.34 -3.10 16 18 C -0.06 -0.95 11.87 -16.85 -0.20 -1.15 16 19 N -0.56 -8.58 5.80 -8.87 -0.05 -8.63 16 20 H 0.40 4.64 7.85 -40.82 -0.32 4.32 16 21 C 0.10 1.85 6.73 -81.48 -0.55 1.31 16 22 C -0.07 -1.15 5.59 -91.77 -0.51 -1.67 16 23 C -0.19 -2.29 10.13 -26.68 -0.27 -2.56 16 24 C -0.17 -2.24 10.24 -26.69 -0.27 -2.51 16 25 H 0.28 6.93 8.31 -40.82 -0.34 6.60 16 26 H 0.10 2.26 4.08 -51.93 -0.21 2.05 16 27 H 0.11 2.32 7.37 -51.93 -0.38 1.94 16 28 H 0.40 4.70 9.10 45.56 0.41 5.11 16 29 H 0.19 4.30 5.03 -52.49 -0.26 4.03 16 30 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 31 H 0.14 2.58 6.81 -51.93 -0.35 2.22 16 32 H 0.08 0.89 7.09 -51.93 -0.37 0.52 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 299.39 15.07 4.51 4.51 Total: -1.00 -32.29 299.39 -5.39 -37.69 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -2.63 Total: 16.50 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.80 Total: 5.32 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.55 Total: -42.56 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.77 Total: -37.00 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.25 Total: 15.55 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.29 -5.39 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.012 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds