Wall clock time and date at job start Tue Mar 31 2020 00:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48498 * 109.47030 * 271.24486 * 3 2 1 5 5 H 1.48500 * 109.46667 * 31.24374 * 3 2 1 6 6 H 1.48499 * 109.47094 * 151.24083 * 3 2 1 7 7 C 1.38979 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99797 * 351.17336 * 7 2 1 9 9 N 1.36971 * 119.99898 * 171.17402 * 7 2 1 10 10 C 1.46495 * 120.00385 * 308.53124 * 9 7 2 11 11 C 1.50709 * 109.47102 * 270.15511 * 10 9 7 12 12 O 1.20829 * 119.99716 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99877 * 179.97438 * 11 10 9 14 14 C 1.34779 * 119.99856 * 128.52947 * 9 7 2 15 15 O 1.21649 * 120.00034 * 183.31439 * 14 9 7 16 16 C 1.47188 * 119.99948 * 3.31684 * 14 9 7 17 17 C 1.46710 * 127.01859 * 353.26851 * 16 14 9 18 18 C 1.34447 * 106.38945 * 179.73968 * 17 16 14 19 19 N 1.36422 * 109.09024 * 359.97438 * 18 17 16 20 20 H 0.96996 * 124.82629 * 179.97438 * 19 18 17 21 21 C 1.34710 * 110.35863 * 0.02562 * 19 18 17 22 22 C 1.50696 * 125.90049 * 179.97438 * 21 19 18 23 23 C 1.53008 * 117.49784 * 8.74998 * 22 21 19 24 24 C 1.53002 * 117.50127 * 300.08813 * 22 21 19 25 25 H 0.96999 * 120.00353 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47244 * 30.15156 * 10 9 7 27 27 H 1.08999 * 109.47521 * 150.15332 * 10 9 7 28 28 H 0.96701 * 116.99375 * 179.97438 * 13 11 10 29 29 H 1.08000 * 126.80622 * 359.75976 * 17 16 14 30 30 H 1.08003 * 125.45476 * 179.97438 * 18 17 16 31 31 H 1.08995 * 115.55137 * 154.41435 * 22 21 19 32 32 H 1.08994 * 117.49765 * 359.97438 * 23 22 21 33 33 H 1.08999 * 117.49785 * 145.02284 * 23 22 21 34 34 H 1.08993 * 117.50372 * 214.97613 * 24 22 21 35 35 H 1.09002 * 117.49746 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4693 2.0616 -1.3997 5 1 1.4589 2.6448 0.7262 6 1 3.5586 1.4326 0.6736 7 6 2.0090 -1.2036 -0.0005 8 1 1.4786 -2.1334 0.1426 9 7 3.3666 -1.2105 -0.1825 10 6 3.9567 -0.5019 -1.3209 11 6 4.0436 -1.4336 -2.5023 12 8 3.6532 -2.5728 -2.4032 13 8 4.5549 -0.9979 -3.6644 14 6 4.1595 -1.8692 0.6857 15 8 5.3686 -1.8254 0.5589 16 6 3.5626 -2.6415 1.7873 17 6 2.1461 -2.6897 2.1661 18 6 2.0629 -3.5225 3.2184 19 7 3.3092 -3.9900 3.5170 20 1 3.5115 -4.6069 4.2376 21 6 4.2195 -3.4722 2.6697 22 6 5.7001 -3.7524 2.6841 23 6 6.2004 -4.8600 3.6136 24 6 6.4748 -3.3929 3.9536 25 1 -0.4850 0.8400 0.0004 26 1 3.3334 0.3543 -1.5786 27 1 4.9561 -0.1570 -1.0558 28 1 4.5903 -1.6321 -4.3935 29 1 1.3315 -2.1613 1.6932 30 1 1.1548 -3.7801 3.7432 31 1 6.2116 -3.6269 1.7299 32 1 5.4587 -5.3857 4.2148 33 1 7.0414 -5.4629 3.2709 34 1 7.4961 -3.0313 3.8345 35 1 5.9134 -2.9541 4.7785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:46 Heat of formation + Delta-G solvation = -52.531347 kcal Electronic energy + Delta-G solvation = -22084.124204 eV Core-core repulsion = 18662.968927 eV Total energy + Delta-G solvation = -3421.155277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.12102 -41.33331 -39.81994 -37.72679 -37.13524 -36.57700 -33.93460 -32.13057 -29.93454 -29.59101 -26.89901 -24.34583 -23.30204 -23.13054 -22.27834 -21.27144 -20.50685 -19.20822 -18.73671 -18.51194 -17.51075 -17.24423 -16.89045 -16.48876 -16.20127 -15.64460 -15.52855 -14.96009 -14.85289 -14.58721 -14.19140 -14.02732 -13.62372 -13.49707 -13.07154 -12.83373 -12.72844 -12.56549 -12.44221 -12.19179 -11.87133 -11.62874 -11.59285 -11.31054 -11.03378 -10.55627 -9.67706 -9.47527 -8.81189 -8.38333 -6.20167 0.83581 1.19358 1.23062 1.37184 1.46461 1.70925 1.98283 2.22947 2.37007 2.68486 2.78508 3.00024 3.15757 3.65026 3.91027 3.99718 4.14981 4.19253 4.34844 4.41314 4.43735 4.64660 4.72014 4.85048 4.96543 5.09142 5.18939 5.37877 5.47989 5.50211 5.59951 6.07702 6.17980 6.20983 6.27812 6.82818 7.01068 7.03810 7.39625 7.77845 8.71649 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.007504 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.986351 B = 3730.469440 C = 4580.158935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.030 3.970 3 Si 0.916 3.084 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.086 0.914 9 N -0.466 5.466 10 C 0.099 3.901 11 C 0.472 3.528 12 O -0.537 6.537 13 O -0.508 6.508 14 C 0.566 3.434 15 O -0.614 6.614 16 C -0.247 4.247 17 C -0.171 4.171 18 C -0.026 4.026 19 N -0.532 5.532 20 H 0.428 0.572 21 C 0.118 3.882 22 C -0.114 4.114 23 C -0.154 4.154 24 C -0.158 4.158 25 H 0.279 0.721 26 H 0.109 0.891 27 H 0.123 0.877 28 H 0.424 0.576 29 H 0.153 0.847 30 H 0.202 0.798 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.024 -4.953 5.971 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.173 4.173 3 Si 0.740 3.260 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.452 4.452 8 H 0.103 0.897 9 N -0.187 5.187 10 C -0.026 4.026 11 C 0.313 3.687 12 O -0.427 6.427 13 O -0.321 6.321 14 C 0.361 3.639 15 O -0.501 6.501 16 C -0.257 4.257 17 C -0.194 4.194 18 C -0.153 4.153 19 N -0.129 5.129 20 H 0.268 0.732 21 C -0.001 4.001 22 C -0.134 4.134 23 C -0.191 4.191 24 C -0.196 4.196 25 H 0.089 0.911 26 H 0.127 0.873 27 H 0.140 0.860 28 H 0.285 0.715 29 H 0.170 0.830 30 H 0.219 0.781 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.270 -4.932 6.337 11.527 hybrid contribution -0.204 0.307 -0.755 0.840 sum 8.066 -4.626 5.582 10.845 Atomic orbital electron populations 1.69719 1.07070 1.28981 1.48133 1.25981 0.95807 1.00878 0.94680 0.86240 0.79730 0.80233 0.79782 1.17310 1.20452 1.18869 1.19040 0.80256 0.94827 1.51097 0.89674 1.43151 1.06897 1.49111 1.19564 1.21397 1.02770 0.94073 0.84356 1.24276 0.72313 0.87681 0.84393 1.90660 1.45897 1.21927 1.84167 1.84494 1.76020 1.49166 1.22407 1.18029 0.84977 0.79500 0.81442 1.90532 1.15066 1.67185 1.77282 1.20331 0.95162 1.08107 1.02074 1.23122 0.95864 1.01989 0.98450 1.22180 0.88692 1.02814 1.01597 1.41270 1.05948 1.38278 1.27428 0.73225 1.19612 0.90761 0.97226 0.92518 1.20560 0.87844 1.07387 0.97571 1.23172 1.03784 0.91117 1.00990 1.23087 1.01397 0.98472 0.96617 0.91064 0.87331 0.85972 0.71455 0.83006 0.78122 0.87531 0.87195 0.86496 0.87343 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.91 13.96 21.67 0.30 -49.60 16 2 C 0.03 1.60 5.43 84.93 0.46 2.06 16 3 Si 0.92 41.08 24.98 68.60 1.71 42.79 16 4 H -0.25 -10.12 6.77 99.48 0.67 -9.45 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.32 -17.71 7.00 84.07 0.59 -17.13 16 8 H 0.09 5.10 5.78 -2.91 -0.02 5.09 16 9 N -0.47 -24.04 1.46 -643.55 -0.94 -24.98 16 10 C 0.10 4.47 4.73 85.64 0.41 4.87 16 11 C 0.47 20.32 8.40 71.24 0.60 20.92 16 12 O -0.54 -27.10 17.19 21.95 0.38 -26.72 16 13 O -0.51 -16.14 13.42 -51.41 -0.69 -16.83 16 14 C 0.57 29.37 7.62 86.59 0.66 30.03 16 15 O -0.61 -32.22 14.59 -4.19 -0.06 -32.28 16 16 C -0.25 -11.51 6.18 -18.81 -0.12 -11.63 16 17 C -0.17 -7.49 9.17 23.62 0.22 -7.28 16 18 C -0.03 -0.84 11.87 83.11 0.99 0.15 16 19 N -0.53 -15.03 5.80 -181.97 -1.06 -16.08 16 20 H 0.43 7.96 7.85 -92.71 -0.73 7.24 16 21 C 0.12 4.35 6.73 42.02 0.28 4.63 16 22 C -0.11 -3.64 5.59 -11.54 -0.06 -3.70 16 23 C -0.15 -3.12 10.13 30.62 0.31 -2.81 16 24 C -0.16 -3.76 10.24 30.62 0.31 -3.44 16 25 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.11 4.72 4.08 -2.39 -0.01 4.71 16 27 H 0.12 5.16 7.37 -2.39 -0.02 5.15 16 28 H 0.42 9.08 9.10 -74.06 -0.67 8.40 16 29 H 0.15 7.63 5.03 -2.91 -0.01 7.62 16 30 H 0.20 4.68 8.06 -2.91 -0.02 4.65 16 31 H 0.11 4.09 6.81 -2.39 -0.02 4.07 16 32 H 0.11 1.70 7.09 -2.39 -0.02 1.68 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -74.70 299.39 4.03 -70.67 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.26 Total: 36.35 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 4.64 Total: 16.68 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -1.69 Total: -90.67 kcal Atomic # 8 Polarization: -75.45 SS G_CDS: -0.37 Total: -75.83 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.71 Total: 42.79 kcal Total: -74.70 4.03 -70.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.135 kcal (2) G-P(sol) polarization free energy of solvation -74.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds