Wall clock time and date at job start Tue Mar 31 2020 00:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47242 * 239.99851 * 3 2 1 5 5 H 1.48501 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46925 * 120.00063 * 3 2 1 7 7 C 1.38955 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00284 * 157.26746 * 7 2 1 9 9 N 1.37104 * 119.99639 * 337.26718 * 7 2 1 10 10 C 1.46496 * 120.00415 * 325.30800 * 9 7 2 11 11 C 1.53003 * 109.47381 * 270.00253 * 10 9 7 12 12 C 1.50693 * 109.47088 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00445 * 359.97438 * 12 11 10 14 14 O 1.34236 * 119.99967 * 179.97438 * 12 11 10 15 15 C 1.34775 * 119.99546 * 145.30950 * 9 7 2 16 16 O 1.21297 * 119.99592 * 184.88500 * 15 9 7 17 17 C 1.50694 * 120.00515 * 4.88485 * 15 9 7 18 18 C 1.50701 * 109.47593 * 177.77862 * 17 15 9 19 19 C 1.38647 * 120.78903 * 269.72138 * 18 17 15 20 20 C 1.38210 * 119.15982 * 179.79253 * 19 18 17 21 21 N 1.31864 * 120.76378 * 0.49241 * 20 19 18 22 22 C 1.31878 * 121.72850 * 359.73521 * 21 20 19 23 23 C 1.38209 * 120.75893 * 0.02657 * 22 21 20 24 24 H 0.96993 * 120.00281 * 5.01034 * 1 2 3 25 25 H 1.09009 * 109.47022 * 29.99912 * 10 9 7 26 26 H 1.08994 * 109.47431 * 149.99764 * 10 9 7 27 27 H 1.08995 * 109.46843 * 299.99727 * 11 10 9 28 28 H 1.09006 * 109.46902 * 59.99472 * 11 10 9 29 29 H 0.96700 * 117.00240 * 180.02562 * 14 12 11 30 30 H 1.09003 * 109.47150 * 297.78044 * 17 15 9 31 31 H 1.09004 * 109.47348 * 57.77750 * 17 15 9 32 32 H 1.08001 * 120.42069 * 0.02562 * 19 18 17 33 33 H 1.07996 * 119.61789 * 180.20244 * 20 19 18 34 34 H 1.07996 * 119.61735 * 180.02562 * 22 21 20 35 35 H 1.08002 * 120.41364 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0259 -1.2396 -0.3620 9 7 1.4032 -2.3448 0.4578 10 6 0.4529 -2.2737 1.5705 11 6 1.2024 -2.4466 2.8931 12 6 0.2250 -2.3728 4.0377 13 8 -0.9504 -2.1992 3.8183 14 8 0.6601 -2.4999 5.3012 15 6 1.6821 -3.5323 -0.1154 16 8 1.0816 -4.5281 0.2297 17 6 2.7398 -3.6229 -1.1849 18 6 2.8944 -5.0580 -1.6183 19 6 3.8032 -5.8952 -0.9896 20 6 3.9143 -7.2066 -1.4116 21 7 3.1756 -7.6603 -2.4052 22 6 2.3045 -6.8915 -3.0291 23 6 2.1352 -5.5707 -2.6590 24 1 -0.4850 0.8367 -0.0734 25 1 -0.0469 -1.3050 1.5601 26 1 -0.2882 -3.0660 1.4666 27 1 1.7022 -3.4151 2.9036 28 1 1.9436 -1.6541 2.9970 29 1 -0.0041 -2.4461 6.0019 30 1 2.4448 -3.0148 -2.0401 31 1 3.6881 -3.2585 -0.7899 32 1 4.4140 -5.5283 -0.1780 33 1 4.6175 -7.8662 -0.9249 34 1 1.7168 -7.2986 -3.8385 35 1 1.4204 -4.9459 -3.1740 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:33 Heat of formation + Delta-G solvation = -92.602963 kcal Electronic energy + Delta-G solvation = -21253.935343 eV Core-core repulsion = 17831.042430 eV Total energy + Delta-G solvation = -3422.892913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97428 -39.79517 -38.48721 -35.86234 -35.10799 -33.32691 -32.02022 -30.87283 -30.78322 -27.89116 -25.30516 -23.97252 -23.12514 -21.89779 -20.47254 -19.23304 -17.84050 -17.04264 -16.30367 -16.17270 -16.02396 -15.80241 -15.48214 -15.24481 -14.61034 -14.17295 -13.99434 -13.49587 -13.35068 -12.86979 -12.81814 -12.51621 -12.11444 -11.95191 -11.58311 -11.34143 -11.21394 -11.15699 -10.84189 -10.82247 -10.53529 -10.19161 -10.12057 -9.39977 -9.22353 -9.19512 -8.81989 -8.54684 -7.70524 -6.51098 -4.20873 1.47368 1.62075 2.62671 3.02102 3.13240 3.13718 3.35903 3.73049 4.00552 4.12483 4.70013 4.73605 4.84080 5.09229 5.13147 5.46323 5.48918 5.54598 5.73259 5.83887 5.89484 5.93782 6.12461 6.14551 6.24682 6.28283 6.38448 6.76292 6.77644 6.82409 7.03871 7.21392 7.38699 7.74689 8.19565 8.25274 8.26832 8.91848 9.32296 9.75917 10.50234 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.005788 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.781127 B = 4836.198589 C = 6202.245489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.437 5.437 10 C 0.122 3.878 11 C -0.124 4.124 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.525 6.525 15 C 0.475 3.525 16 O -0.596 6.596 17 C -0.090 4.090 18 C -0.002 4.002 19 C -0.164 4.164 20 C 0.092 3.908 21 N -0.498 5.498 22 C 0.093 3.907 23 C -0.159 4.159 24 H 0.274 0.726 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.401 0.599 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 -3.360 1.281 7.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.161 4.161 3 Si 0.741 3.259 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.484 4.484 8 H 0.112 0.888 9 N -0.155 5.155 10 C -0.002 4.002 11 C -0.163 4.163 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.264 3.736 16 O -0.482 6.482 17 C -0.130 4.130 18 C -0.010 4.010 19 C -0.184 4.184 20 C -0.065 4.065 21 N -0.208 5.208 22 C -0.064 4.064 23 C -0.179 4.179 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.259 0.741 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.869 -4.519 0.866 7.458 hybrid contribution -0.168 1.980 0.809 2.146 sum 5.701 -2.539 1.676 6.461 Atomic orbital electron populations 1.69833 1.06367 1.28505 1.43881 1.25390 0.95062 0.99994 0.95618 0.86199 0.79409 0.81069 0.79273 1.19584 1.20818 1.19642 1.19402 0.97948 0.85201 1.45801 0.88823 1.43367 1.39286 1.05648 1.27183 1.21238 0.91143 1.06133 0.81705 1.21840 0.98070 1.04945 0.91403 1.23762 0.89150 0.71430 0.83176 1.90706 1.19363 1.44901 1.85101 1.84588 1.46152 1.85271 1.17628 1.20151 0.85707 0.84197 0.83556 1.90583 1.54490 1.36813 1.66288 1.20516 1.00331 0.91895 1.00213 1.20028 0.92479 0.95872 0.92645 1.21972 1.00346 0.95105 1.00936 1.22586 0.96957 0.93530 0.93414 1.67589 1.06422 1.38305 1.08449 1.22612 0.95085 0.90541 0.98150 1.22016 1.00156 0.97131 0.98578 0.91498 0.86297 0.91488 0.88667 0.87692 0.74091 0.87955 0.88794 0.85262 0.83309 0.83237 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.62 11.34 55.50 0.63 -20.99 16 2 C 0.05 1.11 4.95 -17.47 -0.09 1.02 16 3 Si 0.91 18.14 29.61 -169.99 -5.03 13.11 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.36 -8.21 8.73 -14.93 -0.13 -8.35 16 8 H 0.09 2.00 6.95 -52.49 -0.37 1.63 16 9 N -0.44 -10.18 2.54 -114.81 -0.29 -10.47 16 10 C 0.12 2.83 4.34 -4.04 -0.02 2.81 16 11 C -0.12 -2.36 6.13 -27.89 -0.17 -2.53 16 12 C 0.48 8.74 8.33 36.00 0.30 9.04 16 13 O -0.51 -10.88 16.74 -18.75 -0.31 -11.19 16 14 O -0.52 -7.37 13.42 -39.27 -0.53 -7.90 16 15 C 0.48 10.71 7.62 -10.99 -0.08 10.63 16 16 O -0.60 -15.06 15.59 5.54 0.09 -14.97 16 17 C -0.09 -1.63 4.50 -29.04 -0.13 -1.76 16 18 C 0.00 -0.03 4.41 -104.32 -0.46 -0.49 16 19 C -0.16 -2.54 9.82 -39.44 -0.39 -2.93 16 20 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 21 N -0.50 -8.02 10.36 -13.25 -0.14 -8.16 16 22 C 0.09 1.41 11.18 -17.54 -0.20 1.21 16 23 C -0.16 -2.58 9.82 -39.44 -0.39 -2.96 16 24 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 25 H 0.12 3.02 5.32 -51.92 -0.28 2.75 16 26 H 0.07 1.69 7.32 -51.93 -0.38 1.31 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 29 H 0.40 3.71 9.10 45.56 0.41 4.12 16 30 H 0.10 1.81 8.05 -51.93 -0.42 1.39 16 31 H 0.09 1.52 7.65 -51.93 -0.40 1.12 16 32 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -31.18 313.16 -5.91 -37.09 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -3.09 Total: 11.90 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.95 Total: 6.86 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.20 Total: -39.62 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.75 Total: -34.06 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.18 -5.91 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.512 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds