Wall clock time and date at job start Tue Mar 31 2020 00:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47242 * 239.99851 * 3 2 1 5 5 H 1.48501 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46925 * 120.00063 * 3 2 1 7 7 C 1.38955 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00284 * 157.26746 * 7 2 1 9 9 N 1.37104 * 119.99639 * 337.26718 * 7 2 1 10 10 C 1.46496 * 120.00415 * 325.30800 * 9 7 2 11 11 C 1.53003 * 109.47381 * 270.00253 * 10 9 7 12 12 C 1.50693 * 109.47088 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00445 * 359.97438 * 12 11 10 14 14 O 1.34236 * 119.99967 * 179.97438 * 12 11 10 15 15 C 1.34775 * 119.99546 * 145.30950 * 9 7 2 16 16 O 1.21297 * 119.99592 * 184.88500 * 15 9 7 17 17 C 1.50694 * 120.00515 * 4.88485 * 15 9 7 18 18 C 1.50701 * 109.47593 * 177.77862 * 17 15 9 19 19 C 1.38647 * 120.78903 * 269.72138 * 18 17 15 20 20 C 1.38210 * 119.15982 * 179.79253 * 19 18 17 21 21 N 1.31864 * 120.76378 * 0.49241 * 20 19 18 22 22 C 1.31878 * 121.72850 * 359.73521 * 21 20 19 23 23 C 1.38209 * 120.75893 * 0.02657 * 22 21 20 24 24 H 0.96993 * 120.00281 * 5.01034 * 1 2 3 25 25 H 1.09009 * 109.47022 * 29.99912 * 10 9 7 26 26 H 1.08994 * 109.47431 * 149.99764 * 10 9 7 27 27 H 1.08995 * 109.46843 * 299.99727 * 11 10 9 28 28 H 1.09006 * 109.46902 * 59.99472 * 11 10 9 29 29 H 0.96700 * 117.00240 * 180.02562 * 14 12 11 30 30 H 1.09003 * 109.47150 * 297.78044 * 17 15 9 31 31 H 1.09004 * 109.47348 * 57.77750 * 17 15 9 32 32 H 1.08001 * 120.42069 * 0.02562 * 19 18 17 33 33 H 1.07996 * 119.61789 * 180.20244 * 20 19 18 34 34 H 1.07996 * 119.61735 * 180.02562 * 22 21 20 35 35 H 1.08002 * 120.41364 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0259 -1.2396 -0.3620 9 7 1.4032 -2.3448 0.4578 10 6 0.4529 -2.2737 1.5705 11 6 1.2024 -2.4466 2.8931 12 6 0.2250 -2.3728 4.0377 13 8 -0.9504 -2.1992 3.8183 14 8 0.6601 -2.4999 5.3012 15 6 1.6821 -3.5323 -0.1154 16 8 1.0816 -4.5281 0.2297 17 6 2.7398 -3.6229 -1.1849 18 6 2.8944 -5.0580 -1.6183 19 6 3.8032 -5.8952 -0.9896 20 6 3.9143 -7.2066 -1.4116 21 7 3.1756 -7.6603 -2.4052 22 6 2.3045 -6.8915 -3.0291 23 6 2.1352 -5.5707 -2.6590 24 1 -0.4850 0.8367 -0.0734 25 1 -0.0469 -1.3050 1.5601 26 1 -0.2882 -3.0660 1.4666 27 1 1.7022 -3.4151 2.9036 28 1 1.9436 -1.6541 2.9970 29 1 -0.0041 -2.4461 6.0019 30 1 2.4448 -3.0148 -2.0401 31 1 3.6881 -3.2585 -0.7899 32 1 4.4140 -5.5283 -0.1780 33 1 4.6175 -7.8662 -0.9249 34 1 1.7168 -7.2986 -3.8385 35 1 1.4204 -4.9459 -3.1740 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:33 Heat of formation + Delta-G solvation = -113.042893 kcal Electronic energy + Delta-G solvation = -21254.821685 eV Core-core repulsion = 17831.042430 eV Total energy + Delta-G solvation = -3423.779255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41346 -41.11531 -40.12312 -37.27364 -36.83163 -34.70357 -33.79283 -32.44269 -32.03668 -29.30934 -27.08997 -25.58572 -24.30175 -23.20976 -21.94321 -21.00026 -19.30747 -18.61315 -17.94792 -17.61724 -17.31020 -17.22752 -16.97095 -16.45451 -16.21903 -15.82816 -15.62510 -14.84768 -14.52102 -14.36138 -14.31173 -14.11528 -13.64855 -13.36365 -13.10078 -12.94165 -12.75171 -12.58040 -12.54436 -12.20576 -12.12999 -11.92440 -11.68207 -11.10145 -10.70742 -10.40028 -10.21815 -9.98515 -9.53813 -8.30018 -6.05287 0.30469 0.36827 1.17159 1.45359 1.53392 1.61036 1.91018 2.06714 2.37608 2.85349 3.04803 3.20303 3.64822 3.79717 3.92907 3.99739 4.11072 4.28530 4.30913 4.40095 4.51510 4.61480 4.71110 4.74617 4.87310 4.96995 4.98449 5.14136 5.35487 5.51801 5.53683 5.59684 5.86622 5.96941 6.39171 6.98285 7.07974 7.11695 7.54536 7.98150 8.72330 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.005788 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.781127 B = 4836.198589 C = 6202.245489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.004 3.996 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.361 4.361 8 H 0.115 0.885 9 N -0.446 5.446 10 C 0.125 3.875 11 C -0.115 4.115 12 C 0.493 3.507 13 O -0.551 6.551 14 O -0.507 6.507 15 C 0.466 3.534 16 O -0.630 6.630 17 C -0.078 4.078 18 C -0.024 4.024 19 C -0.169 4.169 20 C 0.090 3.910 21 N -0.514 5.514 22 C 0.089 3.911 23 C -0.175 4.175 24 H 0.272 0.728 25 H 0.096 0.904 26 H 0.033 0.967 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.427 0.573 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.148 0.852 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.534 -3.343 1.719 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.200 4.200 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.132 0.868 9 N -0.164 5.164 10 C 0.001 3.999 11 C -0.153 4.153 12 C 0.337 3.663 13 O -0.442 6.442 14 O -0.320 6.320 15 C 0.256 3.744 16 O -0.518 6.518 17 C -0.117 4.117 18 C -0.032 4.032 19 C -0.189 4.189 20 C -0.067 4.067 21 N -0.224 5.224 22 C -0.067 4.067 23 C -0.194 4.194 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.121 0.879 28 H 0.137 0.863 29 H 0.288 0.712 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.166 0.834 33 H 0.199 0.801 34 H 0.194 0.806 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.144 -4.508 1.330 9.403 hybrid contribution -0.895 1.893 0.718 2.213 sum 7.250 -2.615 2.048 7.974 Atomic orbital electron populations 1.69977 1.08194 1.29047 1.45766 1.26244 0.95504 1.03157 0.95084 0.85164 0.77939 0.76527 0.79895 1.18286 1.21892 1.18670 1.19857 0.98660 0.85023 1.45257 0.86790 1.43606 1.39093 1.06266 1.27479 1.20992 0.91320 1.03428 0.84169 1.21599 0.97905 1.05843 0.89968 1.23423 0.88080 0.70594 0.84214 1.90707 1.20761 1.46813 1.85881 1.84503 1.46666 1.84210 1.16644 1.20904 0.86185 0.83393 0.83904 1.90552 1.55927 1.37814 1.67469 1.20421 0.99598 0.93113 0.98584 1.20118 0.93796 0.95654 0.93664 1.22233 1.00149 0.95288 1.01185 1.23133 0.96879 0.93786 0.92859 1.67672 1.06916 1.38691 1.09080 1.23036 0.94971 0.90118 0.98559 1.22200 1.00438 0.97900 0.98898 0.91823 0.88601 0.94816 0.87879 0.86262 0.71177 0.87844 0.86583 0.83381 0.80110 0.80612 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.41 11.34 21.66 0.25 -46.17 16 2 C 0.00 0.18 4.95 84.93 0.42 0.60 16 3 Si 0.98 36.40 29.61 68.60 2.03 38.43 16 4 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 5 H -0.29 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.36 -16.37 8.73 84.04 0.73 -15.64 16 8 H 0.11 4.61 6.95 -2.91 -0.02 4.59 16 9 N -0.45 -20.95 2.54 -635.54 -1.61 -22.56 16 10 C 0.13 5.99 4.34 86.38 0.37 6.36 16 11 C -0.11 -4.33 6.13 29.85 0.18 -4.15 16 12 C 0.49 17.54 8.33 71.23 0.59 18.13 16 13 O -0.55 -23.65 16.74 21.97 0.37 -23.28 16 14 O -0.51 -13.04 13.42 -51.48 -0.69 -13.73 16 15 C 0.47 21.06 7.62 87.66 0.67 21.73 16 16 O -0.63 -32.37 15.59 -3.08 -0.05 -32.42 16 17 C -0.08 -2.74 4.50 29.10 0.13 -2.61 16 18 C -0.02 -0.79 4.41 -19.67 -0.09 -0.88 16 19 C -0.17 -4.93 9.82 22.36 0.22 -4.71 16 20 C 0.09 2.46 11.18 84.68 0.95 3.41 16 21 N -0.51 -15.64 10.36 -195.84 -2.03 -17.67 16 22 C 0.09 2.60 11.18 84.68 0.95 3.54 16 23 C -0.17 -5.55 9.82 22.36 0.22 -5.34 16 24 H 0.27 13.53 8.32 -92.71 -0.77 12.76 16 25 H 0.10 5.07 5.32 -2.38 -0.01 5.05 16 26 H 0.03 1.78 7.32 -2.39 -0.02 1.77 16 27 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 28 H 0.12 4.15 8.14 -2.38 -0.02 4.14 16 29 H 0.43 6.72 9.10 -74.06 -0.67 6.04 16 30 H 0.10 3.59 8.05 -2.39 -0.02 3.57 16 31 H 0.12 3.50 7.65 -2.38 -0.02 3.48 16 32 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -68.20 313.16 4.07 -64.13 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.46 Total: 32.80 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 5.35 Total: 20.45 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -3.40 Total: -86.39 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: -0.37 Total: -69.43 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Total: -68.20 4.07 -64.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.909 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds