Wall clock time and date at job start Tue Mar 31 2020 00:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48505 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47438 * 299.99935 * 3 2 1 6 6 H 1.48502 * 109.47215 * 59.99697 * 3 2 1 7 7 C 1.39058 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00185 * 183.45404 * 7 2 1 9 9 N 1.36765 * 119.99455 * 3.45651 * 7 2 1 10 10 C 1.46501 * 120.00007 * 312.00559 * 9 7 2 11 11 C 1.53007 * 109.47025 * 274.48801 * 10 9 7 12 12 C 1.50703 * 109.47108 * 179.97438 * 11 10 9 13 13 O 1.20832 * 119.99696 * 0.02562 * 12 11 10 14 14 O 1.34227 * 120.00170 * 179.97438 * 12 11 10 15 15 C 1.34778 * 120.00164 * 132.01005 * 9 7 2 16 16 O 1.21838 * 119.99960 * 174.98128 * 15 9 7 17 17 C 1.41309 * 119.99884 * 354.97764 * 15 9 7 18 18 C 1.35769 * 120.00169 * 185.20424 * 17 15 9 19 19 C 1.41590 * 119.99944 * 8.36227 * 18 17 15 20 20 C 1.38359 * 126.26980 * 221.26977 * 19 18 17 21 21 C 1.39766 * 107.08060 * 179.85022 * 20 19 18 22 22 C 1.35520 * 107.91922 * 0.41698 * 21 20 19 23 23 N 1.35792 * 108.91826 * 359.73899 * 22 21 20 24 24 H 0.97006 * 125.69410 * 179.97438 * 23 22 21 25 25 H 0.97000 * 120.00080 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47154 * 34.48560 * 10 9 7 27 27 H 1.08998 * 109.47428 * 154.48783 * 10 9 7 28 28 H 1.08995 * 109.47059 * 300.00041 * 11 10 9 29 29 H 1.09005 * 109.46841 * 60.00117 * 11 10 9 30 30 H 0.96698 * 116.99961 * 180.02562 * 14 12 11 31 31 H 1.08003 * 119.99831 * 5.48073 * 17 15 9 32 32 H 1.08005 * 120.00375 * 188.36954 * 18 17 15 33 33 H 1.08003 * 126.45460 * 359.95957 * 20 19 18 34 34 H 1.08001 * 126.03772 * 180.12271 * 21 20 19 35 35 H 1.08006 * 125.54514 * 179.71963 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7077 1.3464 0.0006 5 1 1.8890 2.3965 -1.2125 6 1 1.8889 2.3965 1.2125 7 6 2.0091 -1.2042 0.0005 8 1 3.0875 -1.2050 0.0569 9 7 1.3271 -2.3876 -0.0703 10 6 0.1780 -2.6245 0.8070 11 6 0.6662 -3.1681 2.1513 12 6 -0.5158 -3.4112 3.0540 13 8 -1.6340 -3.1744 2.6621 14 8 -0.3265 -3.8917 4.2930 15 6 1.7122 -3.3359 -0.9472 16 8 1.1637 -4.4238 -0.9479 17 6 2.7520 -3.0682 -1.8659 18 6 3.0690 -3.9829 -2.8179 19 6 2.2494 -5.1221 -3.0059 20 6 2.6851 -6.4146 -3.2382 21 6 1.5465 -7.2161 -3.3591 22 6 0.4591 -6.4207 -3.2122 23 7 0.8725 -5.1453 -2.9969 24 1 0.2943 -4.3785 -2.8600 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3567 -1.6880 0.9663 27 1 -0.4902 -3.3499 0.3428 28 1 1.2009 -4.1045 1.9920 29 1 1.3343 -2.4426 2.6155 30 1 -1.1151 -4.0317 4.8348 31 1 3.2976 -2.1379 -1.8080 32 1 3.9463 -3.8417 -3.4317 33 1 3.7116 -6.7425 -3.3106 34 1 1.5352 -8.2804 -3.5424 35 1 -0.5691 -6.7480 -3.2590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:10 Heat of formation + Delta-G solvation = -41.236616 kcal Electronic energy + Delta-G solvation = -21657.056588 eV Core-core repulsion = 18236.391087 eV Total energy + Delta-G solvation = -3420.665501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47243 -39.80351 -38.61808 -35.83278 -35.16021 -32.94439 -31.97419 -30.67739 -30.17569 -27.56625 -25.36573 -24.43418 -22.16636 -20.50155 -19.79425 -19.64718 -18.98819 -17.81854 -17.55441 -16.36140 -15.95880 -15.64968 -15.43920 -14.70252 -14.11378 -13.86079 -13.68537 -13.18266 -12.89087 -12.75270 -12.61364 -12.51510 -12.19343 -11.77084 -11.65148 -11.44089 -11.27975 -11.14957 -11.07547 -10.81906 -10.43563 -10.11291 -10.06980 -9.29698 -9.06292 -8.70305 -8.11364 -7.57388 -6.92577 -6.44618 -4.37399 1.55491 2.67893 3.02277 3.11682 3.14394 3.26699 3.45418 3.64929 3.96648 4.18358 4.39424 4.87089 4.89754 5.61919 5.73346 5.74657 5.81212 5.88148 5.99836 6.05185 6.18438 6.35546 6.41861 6.64629 6.72424 6.82678 6.87228 6.96792 7.11927 7.18440 7.50822 7.64689 7.81958 7.85022 8.23362 8.31480 8.32820 8.91779 9.32698 9.77561 10.49341 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.007018 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.392028 B = 3988.690134 C = 5681.717916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.049 3.951 3 Si 0.920 3.080 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.344 4.344 8 H 0.091 0.909 9 N -0.427 5.427 10 C 0.113 3.887 11 C -0.120 4.120 12 C 0.483 3.517 13 O -0.515 6.515 14 O -0.525 6.525 15 C 0.490 3.510 16 O -0.598 6.598 17 C -0.169 4.169 18 C -0.052 4.052 19 C 0.059 3.941 20 C -0.191 4.191 21 C -0.218 4.218 22 C -0.006 4.006 23 N -0.494 5.494 24 H 0.415 0.585 25 H 0.273 0.727 26 H 0.130 0.870 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.400 0.600 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -4.322 -0.495 5.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.158 4.158 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.473 4.473 8 H 0.108 0.892 9 N -0.144 5.144 10 C -0.011 4.011 11 C -0.159 4.159 12 C 0.326 3.674 13 O -0.403 6.403 14 O -0.337 6.337 15 C 0.283 3.717 16 O -0.486 6.486 17 C -0.190 4.190 18 C -0.073 4.073 19 C -0.055 4.055 20 C -0.216 4.216 21 C -0.243 4.243 22 C -0.143 4.143 23 N -0.085 5.085 24 H 0.253 0.747 25 H 0.084 0.916 26 H 0.147 0.853 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.258 0.742 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.297 -4.380 -0.779 5.007 hybrid contribution -0.362 1.192 0.757 1.458 sum 1.935 -3.187 -0.023 3.729 Atomic orbital electron populations 1.69595 1.06250 1.27911 1.45858 1.25672 0.95391 1.00064 0.94705 0.85979 0.79880 0.81427 0.78156 1.18976 1.20364 1.20512 1.19445 0.91920 0.82328 1.53569 0.89186 1.43363 1.27223 1.13957 1.29817 1.21529 0.89662 1.03829 0.86086 1.21819 0.94371 1.03861 0.95885 1.23833 0.91542 0.72079 0.79989 1.90693 1.26707 1.48183 1.74708 1.84597 1.43284 1.78168 1.27619 1.17410 0.85888 0.85457 0.82917 1.90786 1.59538 1.24050 1.74221 1.22416 1.00307 1.00174 0.96138 1.20625 0.97629 0.91799 0.97271 1.17955 0.82894 0.95248 1.09434 1.21073 0.97949 0.91868 1.10708 1.20504 0.92316 0.98509 1.12961 1.21683 0.98847 0.84395 1.09386 1.42214 1.06431 1.09004 1.50848 0.74665 0.91619 0.85281 0.92087 0.88847 0.87841 0.74208 0.84853 0.85204 0.85533 0.85847 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.67 10.87 55.50 0.60 -21.07 16 2 C 0.05 1.15 5.40 -17.45 -0.09 1.05 16 3 Si 0.92 18.29 29.55 -169.99 -5.02 13.26 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.34 -8.07 7.96 -15.05 -0.12 -8.19 16 8 H 0.09 2.02 7.32 -52.49 -0.38 1.63 16 9 N -0.43 -10.04 2.50 -118.15 -0.30 -10.33 16 10 C 0.11 2.63 4.36 -4.04 -0.02 2.61 16 11 C -0.12 -2.39 6.11 -27.88 -0.17 -2.56 16 12 C 0.48 9.02 8.33 36.01 0.30 9.32 16 13 O -0.52 -11.08 16.74 -18.75 -0.31 -11.40 16 14 O -0.53 -7.71 13.42 -39.25 -0.53 -8.23 16 15 C 0.49 11.14 6.95 -15.09 -0.10 11.04 16 16 O -0.60 -14.33 11.38 5.07 0.06 -14.27 16 17 C -0.17 -3.31 9.21 -39.30 -0.36 -3.67 16 18 C -0.05 -0.90 9.96 -39.19 -0.39 -1.29 16 19 C 0.06 1.10 5.23 -83.90 -0.44 0.67 16 20 C -0.19 -3.37 10.86 -38.97 -0.42 -3.79 16 21 C -0.22 -3.68 10.81 -39.98 -0.43 -4.11 16 22 C -0.01 -0.11 11.90 -16.77 -0.20 -0.31 16 23 N -0.49 -9.31 3.94 -10.55 -0.04 -9.35 16 24 H 0.41 8.01 7.68 -40.82 -0.31 7.70 16 25 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 26 H 0.13 3.31 5.27 -51.93 -0.27 3.03 16 27 H 0.06 1.51 7.32 -51.93 -0.38 1.13 16 28 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 30 H 0.40 3.91 9.10 45.56 0.41 4.33 16 31 H 0.13 2.48 6.68 -52.48 -0.35 2.13 16 32 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.15 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -29.74 307.02 -6.33 -36.07 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -2.96 Total: 19.95 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -2.45 Total: 0.76 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.27 Total: -40.75 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.78 Total: -33.90 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.74 -6.33 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.171 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds