Wall clock time and date at job start Tue Mar 31 2020 00:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86798 * 119.99783 * 2 1 4 4 H 1.48508 * 109.46866 * 274.78014 * 3 2 1 5 5 H 1.48496 * 109.47329 * 34.77921 * 3 2 1 6 6 H 1.48497 * 109.47098 * 154.78327 * 3 2 1 7 7 C 1.39049 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00549 * 340.48580 * 7 2 1 9 9 N 1.36770 * 119.99628 * 160.48365 * 7 2 1 10 10 C 1.46496 * 120.00404 * 319.01085 * 9 7 2 11 11 C 1.53000 * 109.47099 * 264.77901 * 10 9 7 12 12 C 1.50696 * 109.47361 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00039 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00139 * 179.97438 * 12 11 10 15 15 C 1.34782 * 119.99726 * 139.00911 * 9 7 2 16 16 O 1.21840 * 119.99765 * 185.20433 * 15 9 7 17 17 C 1.41314 * 119.99986 * 5.20650 * 15 9 7 18 18 C 1.35776 * 119.99949 * 175.81608 * 17 15 9 19 19 C 1.41590 * 119.99728 * 179.97438 * 18 17 15 20 20 C 1.38361 * 126.25779 * 179.97438 * 19 18 17 21 21 C 1.39771 * 107.07661 * 180.02562 * 20 19 18 22 22 C 1.35525 * 107.91685 * 359.73829 * 21 20 19 23 23 N 1.35794 * 108.91945 * 0.43370 * 22 21 20 24 24 H 0.97002 * 125.69438 * 179.82925 * 23 22 21 25 25 H 0.97004 * 120.00136 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46643 * 24.77234 * 10 9 7 27 27 H 1.09000 * 109.47387 * 144.77599 * 10 9 7 28 28 H 1.09007 * 109.47108 * 299.99864 * 11 10 9 29 29 H 1.09007 * 109.47017 * 59.99376 * 11 10 9 30 30 H 0.96701 * 117.00148 * 179.97438 * 14 12 11 31 31 H 1.08004 * 119.99884 * 355.80970 * 17 15 9 32 32 H 1.07998 * 119.99542 * 359.97438 * 18 17 15 33 33 H 1.07995 * 126.46424 * 0.06224 * 20 19 18 34 34 H 1.07996 * 126.04332 * 179.97438 * 21 20 19 35 35 H 1.08005 * 125.54176 * 180.25752 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3940 2.1048 -1.3953 5 1 1.4993 2.6214 0.7986 6 1 3.5921 1.4132 0.5965 7 6 2.0089 -1.2042 0.0005 8 1 1.5155 -2.1126 0.3134 9 7 3.3177 -1.2384 -0.3952 10 6 3.7541 -0.4522 -1.5517 11 6 3.7382 -1.3332 -2.8025 12 6 4.1865 -0.5244 -3.9924 13 8 4.4873 0.6376 -3.8543 14 8 4.2516 -1.0949 -5.2057 15 6 4.2060 -1.9953 0.2790 16 8 5.3881 -1.9531 -0.0132 17 6 3.7663 -2.8380 1.3248 18 6 4.6466 -3.6633 1.9472 19 6 4.2061 -4.5072 2.9953 20 6 4.9870 -5.3945 3.7146 21 6 4.1499 -6.0173 4.6447 22 6 2.9028 -5.5103 4.4884 23 7 2.9220 -4.5956 3.4849 24 1 2.1594 -4.0864 3.1686 25 1 -0.4850 0.8401 0.0004 26 1 3.0787 0.3916 -1.6931 27 1 4.7653 -0.0835 -1.3798 28 1 4.4135 -2.1771 -2.6611 29 1 2.7269 -1.7020 -2.9744 30 1 4.5444 -0.5359 -5.9385 31 1 2.7300 -2.8254 1.6289 32 1 5.6827 -3.6761 1.6428 33 1 6.0440 -5.5720 3.5826 34 1 4.4455 -6.7670 5.3636 35 1 2.0343 -5.7904 5.0660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:12 Heat of formation + Delta-G solvation = -55.833455 kcal Electronic energy + Delta-G solvation = -20992.202761 eV Core-core repulsion = 17570.904294 eV Total energy + Delta-G solvation = -3421.298467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83634 -40.05471 -39.02667 -36.02377 -35.30008 -33.29228 -32.35183 -30.97362 -30.82854 -28.10164 -25.16671 -25.00643 -22.53387 -20.88502 -20.37222 -19.94113 -18.86706 -17.97768 -17.37145 -16.80657 -16.33263 -16.21379 -15.58944 -14.93884 -14.36623 -14.12672 -13.90388 -13.61154 -13.48084 -13.18293 -12.84551 -12.72663 -12.38354 -12.17402 -12.04339 -11.76958 -11.46748 -11.32904 -11.19201 -10.83475 -10.34416 -10.22330 -10.01895 -9.78545 -9.40695 -8.80292 -8.79699 -7.97811 -7.29180 -6.64538 -4.27169 1.19659 2.47753 2.78280 3.05634 3.18124 3.22034 3.28141 3.36900 3.46843 4.03175 4.25596 4.43491 4.82390 5.24424 5.31872 5.44025 5.48181 5.54865 5.56112 5.75523 5.81269 6.01601 6.13838 6.24021 6.30596 6.38135 6.50041 6.64177 6.70123 6.92402 7.15339 7.21050 7.26860 7.70235 7.89875 8.04505 8.12520 8.78765 9.17234 9.52332 10.44429 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.005071 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.493806 B = 5520.214108 C = 6549.736672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.071 3.929 3 Si 0.869 3.131 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.351 4.351 8 H 0.105 0.895 9 N -0.455 5.455 10 C 0.113 3.887 11 C -0.123 4.123 12 C 0.485 3.515 13 O -0.519 6.519 14 O -0.520 6.520 15 C 0.510 3.490 16 O -0.601 6.601 17 C -0.176 4.176 18 C -0.037 4.037 19 C 0.037 3.963 20 C -0.171 4.171 21 C -0.208 4.208 22 C -0.005 4.005 23 N -0.544 5.544 24 H 0.420 0.580 25 H 0.278 0.722 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.404 0.596 31 H 0.124 0.876 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 -7.177 1.237 8.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.138 4.138 3 Si 0.695 3.305 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.478 4.478 8 H 0.123 0.877 9 N -0.175 5.175 10 C -0.011 4.011 11 C -0.162 4.162 12 C 0.327 3.673 13 O -0.407 6.407 14 O -0.331 6.331 15 C 0.305 3.695 16 O -0.488 6.488 17 C -0.198 4.198 18 C -0.059 4.059 19 C -0.075 4.075 20 C -0.196 4.196 21 C -0.232 4.232 22 C -0.139 4.139 23 N -0.138 5.138 24 H 0.258 0.742 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.262 0.738 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.605 -6.857 1.391 7.871 hybrid contribution -0.178 1.546 -0.634 1.680 sum 3.427 -5.312 0.758 6.367 Atomic orbital electron populations 1.69710 1.06303 1.28600 1.44164 1.25399 0.95121 0.98712 0.94520 0.87007 0.81283 0.83213 0.78960 1.19328 1.21118 1.18181 1.19000 0.84657 0.96308 1.47801 0.87709 1.43593 1.09048 1.41575 1.23240 1.21412 1.01613 0.93627 0.84452 1.21758 1.04809 0.99938 0.89654 1.23686 0.73217 0.86511 0.83857 1.90702 1.45863 1.18572 1.85612 1.84578 1.80917 1.48536 1.19110 1.17007 0.85159 0.83957 0.83415 1.90709 1.16696 1.70920 1.70490 1.22070 1.00387 0.98400 0.98908 1.20700 1.00358 0.92875 0.91919 1.18403 0.84287 1.03679 1.01106 1.21378 0.99175 0.99855 0.99146 1.20767 0.93083 1.05397 1.03999 1.21928 0.99889 0.96615 0.95480 1.42290 1.09933 1.33165 1.28428 0.74218 0.91187 0.90311 0.90272 0.87427 0.86821 0.73832 0.85799 0.84004 0.84367 0.84813 0.82004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.39 13.95 55.50 0.77 -21.62 16 2 C 0.07 1.81 5.30 -17.45 -0.09 1.72 16 3 Si 0.87 20.45 25.04 -169.99 -4.26 16.20 16 4 H -0.27 -6.28 6.71 56.52 0.38 -5.90 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.35 -8.58 8.83 -15.05 -0.13 -8.71 16 8 H 0.11 2.60 6.94 -52.49 -0.36 2.24 16 9 N -0.46 -10.55 2.12 -118.16 -0.25 -10.80 16 10 C 0.11 2.49 3.27 -4.04 -0.01 2.47 16 11 C -0.12 -2.26 6.10 -27.88 -0.17 -2.43 16 12 C 0.48 8.36 8.33 36.00 0.30 8.66 16 13 O -0.52 -10.46 16.74 -18.75 -0.31 -10.77 16 14 O -0.52 -6.92 13.42 -39.25 -0.53 -7.45 16 15 C 0.51 11.57 7.35 -15.09 -0.11 11.46 16 16 O -0.60 -14.60 15.75 5.06 0.08 -14.52 16 17 C -0.18 -3.42 8.73 -39.29 -0.34 -3.76 16 18 C -0.04 -0.64 9.40 -39.19 -0.37 -1.00 16 19 C 0.04 0.56 6.74 -83.90 -0.57 0.00 16 20 C -0.17 -2.37 10.86 -38.96 -0.42 -2.80 16 21 C -0.21 -2.57 10.81 -39.98 -0.43 -3.00 16 22 C 0.00 -0.06 11.90 -16.77 -0.20 -0.25 16 23 N -0.54 -7.34 5.94 -10.55 -0.06 -7.40 16 24 H 0.42 5.19 7.87 -40.82 -0.32 4.87 16 25 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.08 1.83 3.75 -51.93 -0.19 1.64 16 27 H 0.08 1.82 7.47 -51.93 -0.39 1.43 16 28 H 0.11 1.90 8.14 -51.92 -0.42 1.48 16 29 H 0.11 2.01 8.14 -51.92 -0.42 1.59 16 30 H 0.40 3.42 9.10 45.56 0.41 3.83 16 31 H 0.12 2.32 5.28 -52.48 -0.28 2.04 16 32 H 0.14 2.44 7.46 -52.49 -0.39 2.05 16 33 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.16 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -31.29 308.16 -5.26 -36.55 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -2.79 Total: 12.84 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.55 Total: 2.35 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.46 Total: -39.82 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.76 Total: -32.75 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.26 Total: 16.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.29 -5.26 -36.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.287 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds