Wall clock time and date at job start Tue Mar 31 2020 00:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31370 * 1 3 3 Si 1.86798 * 119.99783 * 2 1 4 4 H 1.48508 * 109.46866 * 274.78014 * 3 2 1 5 5 H 1.48496 * 109.47329 * 34.77921 * 3 2 1 6 6 H 1.48497 * 109.47098 * 154.78327 * 3 2 1 7 7 C 1.39049 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00549 * 340.48580 * 7 2 1 9 9 N 1.36770 * 119.99628 * 160.48365 * 7 2 1 10 10 C 1.46496 * 120.00404 * 319.01085 * 9 7 2 11 11 C 1.53000 * 109.47099 * 264.77901 * 10 9 7 12 12 C 1.50696 * 109.47361 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00039 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00139 * 179.97438 * 12 11 10 15 15 C 1.34782 * 119.99726 * 139.00911 * 9 7 2 16 16 O 1.21840 * 119.99765 * 185.20433 * 15 9 7 17 17 C 1.41314 * 119.99986 * 5.20650 * 15 9 7 18 18 C 1.35776 * 119.99949 * 175.81608 * 17 15 9 19 19 C 1.41590 * 119.99728 * 179.97438 * 18 17 15 20 20 C 1.38361 * 126.25779 * 179.97438 * 19 18 17 21 21 C 1.39771 * 107.07661 * 180.02562 * 20 19 18 22 22 C 1.35525 * 107.91685 * 359.73829 * 21 20 19 23 23 N 1.35794 * 108.91945 * 0.43370 * 22 21 20 24 24 H 0.97002 * 125.69438 * 179.82925 * 23 22 21 25 25 H 0.97004 * 120.00136 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46643 * 24.77234 * 10 9 7 27 27 H 1.09000 * 109.47387 * 144.77599 * 10 9 7 28 28 H 1.09007 * 109.47108 * 299.99864 * 11 10 9 29 29 H 1.09007 * 109.47017 * 59.99376 * 11 10 9 30 30 H 0.96701 * 117.00148 * 179.97438 * 14 12 11 31 31 H 1.08004 * 119.99884 * 355.80970 * 17 15 9 32 32 H 1.07998 * 119.99542 * 359.97438 * 18 17 15 33 33 H 1.07995 * 126.46424 * 0.06224 * 20 19 18 34 34 H 1.07996 * 126.04332 * 179.97438 * 21 20 19 35 35 H 1.08005 * 125.54176 * 180.25752 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3940 2.1048 -1.3953 5 1 1.4993 2.6214 0.7986 6 1 3.5921 1.4132 0.5965 7 6 2.0089 -1.2042 0.0005 8 1 1.5155 -2.1126 0.3134 9 7 3.3177 -1.2384 -0.3952 10 6 3.7541 -0.4522 -1.5517 11 6 3.7382 -1.3332 -2.8025 12 6 4.1865 -0.5244 -3.9924 13 8 4.4873 0.6376 -3.8543 14 8 4.2516 -1.0949 -5.2057 15 6 4.2060 -1.9953 0.2790 16 8 5.3881 -1.9531 -0.0132 17 6 3.7663 -2.8380 1.3248 18 6 4.6466 -3.6633 1.9472 19 6 4.2061 -4.5072 2.9953 20 6 4.9870 -5.3945 3.7146 21 6 4.1499 -6.0173 4.6447 22 6 2.9028 -5.5103 4.4884 23 7 2.9220 -4.5956 3.4849 24 1 2.1594 -4.0864 3.1686 25 1 -0.4850 0.8401 0.0004 26 1 3.0787 0.3916 -1.6931 27 1 4.7653 -0.0835 -1.3798 28 1 4.4135 -2.1771 -2.6611 29 1 2.7269 -1.7020 -2.9744 30 1 4.5444 -0.5359 -5.9385 31 1 2.7300 -2.8254 1.6289 32 1 5.6827 -3.6761 1.6428 33 1 6.0440 -5.5720 3.5826 34 1 4.4455 -6.7670 5.3636 35 1 2.0343 -5.7904 5.0660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:12 Heat of formation + Delta-G solvation = -77.128498 kcal Electronic energy + Delta-G solvation = -20993.126183 eV Core-core repulsion = 17570.904294 eV Total energy + Delta-G solvation = -3422.221890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92729 -41.47256 -40.68522 -37.40277 -36.96884 -34.76002 -34.17575 -32.58502 -31.88081 -29.36065 -26.99765 -26.52418 -23.90646 -22.23225 -21.57894 -21.09413 -20.53698 -19.35198 -18.71418 -18.39604 -17.97482 -17.66602 -17.02781 -16.54999 -16.09000 -15.76033 -15.12161 -14.95277 -14.72977 -14.62018 -14.39995 -14.24077 -14.07003 -13.61472 -13.21123 -13.12988 -12.97429 -12.88924 -12.63653 -12.57431 -12.06545 -11.87523 -11.74360 -11.27069 -11.12646 -10.63945 -9.83350 -9.81137 -8.59088 -8.48985 -6.20945 -0.16611 1.10454 1.16502 1.26924 1.36915 1.67133 1.92062 2.11808 2.13345 2.44958 2.58608 2.82437 2.98688 3.78679 3.84306 4.16772 4.20724 4.30443 4.44484 4.52159 4.53323 4.60121 4.63232 4.75873 4.87339 5.09275 5.28036 5.36167 5.45800 5.51523 5.56157 6.00328 6.07920 6.17297 6.18473 6.68065 6.89029 6.93065 7.34795 7.72148 8.53613 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.005071 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.493806 B = 5520.214108 C = 6549.736672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.044 3.956 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.338 4.338 8 H 0.097 0.903 9 N -0.469 5.469 10 C 0.111 3.889 11 C -0.117 4.117 12 C 0.497 3.503 13 O -0.552 6.552 14 O -0.504 6.504 15 C 0.513 3.487 16 O -0.625 6.625 17 C -0.227 4.227 18 C 0.012 3.988 19 C -0.015 4.015 20 C -0.156 4.156 21 C -0.222 4.222 22 C 0.019 3.981 23 N -0.545 5.545 24 H 0.423 0.577 25 H 0.281 0.719 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.429 0.571 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 -9.093 2.212 10.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.115 0.885 9 N -0.189 5.189 10 C -0.012 4.012 11 C -0.156 4.156 12 C 0.340 3.660 13 O -0.444 6.444 14 O -0.317 6.317 15 C 0.309 3.691 16 O -0.514 6.514 17 C -0.248 4.248 18 C -0.010 4.010 19 C -0.125 4.125 20 C -0.181 4.181 21 C -0.246 4.246 22 C -0.117 4.117 23 N -0.140 5.140 24 H 0.262 0.738 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.291 0.709 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.171 0.829 34 H 0.179 0.821 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.861 -8.770 2.325 9.860 hybrid contribution -0.120 1.848 -0.764 2.004 sum 3.741 -6.922 1.561 8.021 Atomic orbital electron populations 1.69735 1.06860 1.29110 1.46381 1.25705 0.95414 1.00066 0.95002 0.86433 0.79672 0.81925 0.78611 1.19539 1.20379 1.19994 1.18925 0.84949 0.95812 1.46833 0.88529 1.43630 1.08722 1.42346 1.24187 1.21324 1.00086 0.93954 0.85876 1.21572 1.05585 0.99443 0.88969 1.23273 0.72440 0.85595 0.84645 1.90700 1.47513 1.19862 1.86299 1.84499 1.80227 1.48471 1.18526 1.17458 0.84722 0.83411 0.83494 1.90672 1.17565 1.71727 1.71474 1.21780 1.01123 1.01260 1.00672 1.20777 0.99593 0.90344 0.90243 1.18342 0.85779 1.05768 1.02648 1.21804 1.00071 0.98177 0.98077 1.21191 0.92937 1.06107 1.04336 1.22717 1.01164 0.94145 0.93667 1.42426 1.09496 1.33414 1.28652 0.73848 0.90886 0.91730 0.91840 0.86709 0.86075 0.70911 0.85646 0.84303 0.82920 0.82066 0.78217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.00 13.95 21.68 0.30 -46.70 16 2 C 0.04 2.27 5.30 84.96 0.45 2.72 16 3 Si 0.91 43.06 25.04 68.60 1.72 44.78 16 4 H -0.27 -12.74 6.71 99.48 0.67 -12.07 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 7 C -0.34 -16.88 8.83 84.12 0.74 -16.13 16 8 H 0.10 4.92 6.94 -2.91 -0.02 4.90 16 9 N -0.47 -22.27 2.12 -645.89 -1.37 -23.64 16 10 C 0.11 5.03 3.27 86.38 0.28 5.31 16 11 C -0.12 -4.30 6.10 29.85 0.18 -4.12 16 12 C 0.50 16.75 8.33 71.23 0.59 17.34 16 13 O -0.55 -22.20 16.74 21.97 0.37 -21.83 16 14 O -0.50 -12.33 13.42 -51.39 -0.69 -13.02 16 15 C 0.51 23.80 7.35 85.00 0.62 24.43 16 16 O -0.63 -31.03 15.75 -4.80 -0.08 -31.10 16 17 C -0.23 -8.96 8.73 22.46 0.20 -8.77 16 18 C 0.01 0.40 9.40 22.53 0.21 0.61 16 19 C -0.02 -0.44 6.74 39.08 0.26 -0.18 16 20 C -0.16 -3.87 10.86 22.67 0.25 -3.63 16 21 C -0.22 -4.57 10.81 22.01 0.24 -4.33 16 22 C 0.02 0.37 11.90 83.45 0.99 1.36 16 23 N -0.55 -13.52 5.94 -187.28 -1.11 -14.64 16 24 H 0.42 9.91 7.87 -92.71 -0.73 9.18 16 25 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 26 H 0.06 3.08 3.75 -2.39 -0.01 3.07 16 27 H 0.06 3.02 7.47 -2.39 -0.02 3.00 16 28 H 0.11 4.04 8.14 -2.38 -0.02 4.02 16 29 H 0.12 4.25 8.14 -2.38 -0.02 4.24 16 30 H 0.43 6.13 9.10 -74.06 -0.67 5.46 16 31 H 0.13 4.82 5.28 -2.91 -0.02 4.80 16 32 H 0.14 4.73 7.46 -2.91 -0.02 4.71 16 33 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 34 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -67.89 308.16 3.88 -64.01 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.29 Total: 27.53 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.02 Total: 14.61 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.18 Total: -84.97 kcal Atomic # 8 Polarization: -65.56 SS G_CDS: -0.40 Total: -65.96 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.72 Total: 44.78 kcal Total: -67.89 3.88 -64.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.115 kcal (2) G-P(sol) polarization free energy of solvation -67.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds