Wall clock time and date at job start Tue Mar 31 2020 00:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47195 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 120.00383 * 3 2 1 6 6 H 1.48498 * 109.47189 * 240.00023 * 3 2 1 7 7 C 1.40026 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99830 * 1.91300 * 7 2 1 9 9 C 1.41340 * 120.00328 * 181.90808 * 7 2 1 10 10 C 1.40610 * 119.78639 * 187.00807 * 9 7 2 11 11 C 1.38312 * 119.12887 * 179.76936 * 10 9 7 12 12 C 1.38693 * 118.66431 * 0.49611 * 11 10 9 13 13 C 1.39633 * 119.49900 * 359.73988 * 12 11 10 14 14 N 1.39270 * 119.57529 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99841 * 18.87791 * 14 13 12 16 16 O 1.21268 * 120.00470 * 5.60418 * 15 14 13 17 17 C 1.50708 * 120.00128 * 185.60362 * 15 14 13 18 18 C 1.53001 * 109.47504 * 180.02562 * 17 15 14 19 19 C 1.52990 * 109.47184 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47090 * 180.02562 * 19 18 17 21 21 O 1.20823 * 120.00005 * 359.97438 * 20 19 18 22 22 O 1.34227 * 119.99983 * 180.02562 * 20 19 18 23 23 N 1.31925 * 120.85133 * 0.02562 * 13 12 11 24 24 H 0.96995 * 119.99437 * 174.83540 * 1 2 3 25 25 H 1.07998 * 120.43955 * 0.02562 * 10 9 7 26 26 H 1.07997 * 120.66764 * 180.21715 * 11 10 9 27 27 H 1.08000 * 120.25337 * 179.76932 * 12 11 10 28 28 H 0.97003 * 120.00125 * 198.87779 * 14 13 12 29 29 H 1.08999 * 109.46789 * 300.00085 * 17 15 14 30 30 H 1.09001 * 109.47041 * 59.99617 * 17 15 14 31 31 H 1.09002 * 109.46419 * 300.00243 * 18 17 15 32 32 H 1.09001 * 109.46959 * 59.99650 * 18 17 15 33 33 H 1.09007 * 109.47222 * 299.99763 * 19 18 17 34 34 H 1.09001 * 109.47524 * 59.99916 * 19 18 17 35 35 H 0.96709 * 117.00183 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0952 1.6965 1.2125 6 1 3.0951 1.6965 -1.2125 7 6 2.0077 -1.2126 0.0005 8 1 1.4681 -2.1478 -0.0303 9 6 3.4205 -1.2129 0.0413 10 6 4.1233 -2.4217 -0.1070 11 6 5.5058 -2.4056 -0.0697 12 6 6.1521 -1.1938 0.1238 13 6 5.3977 -0.0279 0.2697 14 7 6.0450 1.1899 0.4636 15 6 7.3463 1.3206 0.1383 16 8 7.9270 0.4119 -0.4163 17 6 8.0800 2.5962 0.4639 18 6 9.5310 2.4848 -0.0084 19 6 10.2759 3.7794 0.3226 20 6 11.7049 3.6699 -0.1431 21 8 12.0883 2.6598 -0.6839 22 8 12.5521 4.6941 0.0438 23 7 4.0797 -0.0650 0.2262 24 1 -0.4849 -0.8366 -0.0756 25 1 3.5908 -3.3500 -0.2523 26 1 6.0706 -3.3189 -0.1845 27 1 7.2306 -1.1521 0.1609 28 1 5.5592 1.9441 0.8327 29 1 7.5969 3.4323 -0.0417 30 1 8.0598 2.7622 1.5410 31 1 10.0142 1.6485 0.4968 32 1 9.5508 2.3190 -1.0856 33 1 9.7927 4.6160 -0.1823 34 1 10.2561 3.9448 1.3999 35 1 13.4588 4.5771 -0.2715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:46 Heat of formation + Delta-G solvation = -114.141221 kcal Electronic energy + Delta-G solvation = -20568.990876 eV Core-core repulsion = 17145.163994 eV Total energy + Delta-G solvation = -3423.826882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58113 -40.13822 -38.23775 -36.52882 -34.84015 -34.41893 -33.51035 -31.13414 -30.15907 -28.71706 -25.40620 -24.19597 -22.05245 -21.73887 -20.80889 -19.85156 -18.44842 -18.29938 -17.48882 -16.70915 -16.62529 -16.39267 -15.65506 -15.09681 -14.65234 -14.15625 -14.08091 -13.64326 -13.36738 -13.12078 -12.80416 -12.50124 -12.30598 -12.17727 -11.86101 -11.80591 -11.73814 -11.19018 -11.03260 -10.87175 -10.80675 -10.39207 -10.02080 -9.66793 -9.28569 -9.15082 -8.57391 -7.83434 -7.41515 -7.26810 -4.79944 1.92194 2.18306 2.62216 2.67219 3.03793 3.29754 3.51870 3.62821 3.95153 4.35830 4.41290 4.61508 4.66459 4.69444 4.86477 5.09316 5.17230 5.32244 5.39138 5.51257 5.83872 5.84430 6.04946 6.09928 6.22209 6.43818 6.50253 6.54406 7.11339 7.17166 7.42040 7.55070 7.58478 7.59146 7.74983 8.09206 8.26270 8.43316 8.63335 9.37902 9.98129 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.003694 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.563727 B = 7578.808324 C = 8413.208012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.042 3.958 3 Si 1.159 2.841 4 H -0.333 1.333 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.476 4.476 8 H 0.083 0.917 9 C 0.273 3.727 10 C -0.276 4.276 11 C -0.035 4.035 12 C -0.311 4.311 13 C 0.386 3.614 14 N -0.657 5.657 15 C 0.512 3.488 16 O -0.511 6.511 17 C -0.139 4.139 18 C -0.096 4.096 19 C -0.114 4.114 20 C 0.476 3.524 21 O -0.510 6.510 22 O -0.521 6.521 23 N -0.599 5.599 24 H 0.283 0.717 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.139 0.861 28 H 0.408 0.592 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.992 10.584 2.698 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.179 4.179 3 Si 0.995 3.005 4 H -0.266 1.266 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.508 4.508 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.299 4.299 11 C -0.059 4.059 12 C -0.336 4.336 13 C 0.156 3.844 14 N -0.302 5.302 15 C 0.299 3.701 16 O -0.385 6.385 17 C -0.179 4.179 18 C -0.134 4.134 19 C -0.151 4.151 20 C 0.318 3.682 21 O -0.397 6.397 22 O -0.334 6.334 23 N -0.325 5.325 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.157 0.843 28 H 0.243 0.757 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 16.366 11.966 2.460 20.423 hybrid contribution 0.763 -2.395 -0.202 2.521 sum 17.128 9.572 2.259 19.751 Atomic orbital electron populations 1.70642 1.08153 1.32809 1.31223 1.27792 0.95349 1.06208 0.88543 0.81769 0.70528 0.69563 0.78669 1.26639 1.21291 1.22242 1.20728 0.90088 0.96312 1.43688 0.89855 1.18277 0.93478 0.85958 0.87387 1.21611 0.93883 0.98496 1.15873 1.20942 0.94102 0.96452 0.94419 1.21528 1.00942 0.91242 1.19867 1.18112 0.88691 0.84129 0.93498 1.43361 1.10958 1.13316 1.62585 1.20589 0.81336 0.89706 0.78451 1.90655 1.67035 1.41084 1.39769 1.21652 0.96059 0.96261 1.03901 1.21187 0.92476 0.95826 1.03958 1.21401 0.87936 1.01595 1.04186 1.23568 0.89021 0.80109 0.75506 1.90775 1.78250 1.30994 1.39709 1.84537 1.26406 1.45095 1.77330 1.65921 1.06774 1.29616 1.30216 0.90570 0.87650 0.87569 0.84335 0.75662 0.88244 0.88170 0.89909 0.89896 0.87356 0.87365 0.73185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.88 13.65 55.55 0.76 -21.13 16 2 C 0.04 1.14 5.52 -17.35 -0.10 1.04 16 3 Si 1.16 27.71 25.53 -169.99 -4.34 23.37 16 4 H -0.33 -7.85 7.11 56.52 0.40 -7.44 16 5 H -0.28 -6.48 6.70 56.52 0.38 -6.10 16 6 H -0.29 -7.15 7.10 56.52 0.40 -6.75 16 7 C -0.48 -12.99 9.58 -37.73 -0.36 -13.35 16 8 H 0.08 2.27 8.05 -52.48 -0.42 1.84 16 9 C 0.27 7.20 6.39 -85.00 -0.54 6.66 16 10 C -0.28 -6.64 9.83 -38.66 -0.38 -7.02 16 11 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.31 -7.03 8.83 -38.89 -0.34 -7.38 16 13 C 0.39 8.80 7.51 -154.97 -1.16 7.64 16 14 N -0.66 -11.69 5.41 -11.40 -0.06 -11.75 16 15 C 0.51 7.97 7.67 -10.98 -0.08 7.89 16 16 O -0.51 -9.84 12.78 5.57 0.07 -9.77 16 17 C -0.14 -1.28 5.70 -27.88 -0.16 -1.44 16 18 C -0.10 -0.94 3.79 -26.74 -0.10 -1.04 16 19 C -0.11 -0.74 5.81 -27.89 -0.16 -0.90 16 20 C 0.48 4.20 8.33 36.00 0.30 4.50 16 21 O -0.51 -6.61 16.74 -18.75 -0.31 -6.92 16 22 O -0.52 -3.33 13.42 -39.25 -0.53 -3.86 16 23 N -0.60 -15.14 4.58 -10.26 -0.05 -15.19 16 24 H 0.28 7.36 8.72 -40.82 -0.36 7.00 16 25 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 26 H 0.11 2.01 8.06 -52.49 -0.42 1.58 16 27 H 0.14 3.06 5.33 -52.50 -0.28 2.78 16 28 H 0.41 6.19 8.83 -40.82 -0.36 5.83 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 32 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.41 1.08 9.10 45.56 0.41 1.49 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -34.79 306.98 -6.53 -41.31 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.20 Total: 3.88 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.49 Total: -4.57 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.65 Total: -48.07 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.77 Total: -20.55 kcal Atomic # 14 Polarization: 27.71 SS G_CDS: -4.34 Total: 23.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.79 -6.53 -41.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.831 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds