Wall clock time and date at job start Tue Mar 31 2020 00:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99817 * 2 1 4 4 H 1.48500 * 109.47195 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 120.00383 * 3 2 1 6 6 H 1.48498 * 109.47189 * 240.00023 * 3 2 1 7 7 C 1.40026 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99830 * 1.91300 * 7 2 1 9 9 C 1.41340 * 120.00328 * 181.90808 * 7 2 1 10 10 C 1.40610 * 119.78639 * 187.00807 * 9 7 2 11 11 C 1.38312 * 119.12887 * 179.76936 * 10 9 7 12 12 C 1.38693 * 118.66431 * 0.49611 * 11 10 9 13 13 C 1.39633 * 119.49900 * 359.73988 * 12 11 10 14 14 N 1.39270 * 119.57529 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99841 * 18.87791 * 14 13 12 16 16 O 1.21268 * 120.00470 * 5.60418 * 15 14 13 17 17 C 1.50708 * 120.00128 * 185.60362 * 15 14 13 18 18 C 1.53001 * 109.47504 * 180.02562 * 17 15 14 19 19 C 1.52990 * 109.47184 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47090 * 180.02562 * 19 18 17 21 21 O 1.20823 * 120.00005 * 359.97438 * 20 19 18 22 22 O 1.34227 * 119.99983 * 180.02562 * 20 19 18 23 23 N 1.31925 * 120.85133 * 0.02562 * 13 12 11 24 24 H 0.96995 * 119.99437 * 174.83540 * 1 2 3 25 25 H 1.07998 * 120.43955 * 0.02562 * 10 9 7 26 26 H 1.07997 * 120.66764 * 180.21715 * 11 10 9 27 27 H 1.08000 * 120.25337 * 179.76932 * 12 11 10 28 28 H 0.97003 * 120.00125 * 198.87779 * 14 13 12 29 29 H 1.08999 * 109.46789 * 300.00085 * 17 15 14 30 30 H 1.09001 * 109.47041 * 59.99617 * 17 15 14 31 31 H 1.09002 * 109.46419 * 300.00243 * 18 17 15 32 32 H 1.09001 * 109.46959 * 59.99650 * 18 17 15 33 33 H 1.09007 * 109.47222 * 299.99763 * 19 18 17 34 34 H 1.09001 * 109.47524 * 59.99916 * 19 18 17 35 35 H 0.96709 * 117.00183 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0952 1.6965 1.2125 6 1 3.0951 1.6965 -1.2125 7 6 2.0077 -1.2126 0.0005 8 1 1.4681 -2.1478 -0.0303 9 6 3.4205 -1.2129 0.0413 10 6 4.1233 -2.4217 -0.1070 11 6 5.5058 -2.4056 -0.0697 12 6 6.1521 -1.1938 0.1238 13 6 5.3977 -0.0279 0.2697 14 7 6.0450 1.1899 0.4636 15 6 7.3463 1.3206 0.1383 16 8 7.9270 0.4119 -0.4163 17 6 8.0800 2.5962 0.4639 18 6 9.5310 2.4848 -0.0084 19 6 10.2759 3.7794 0.3226 20 6 11.7049 3.6699 -0.1431 21 8 12.0883 2.6598 -0.6839 22 8 12.5521 4.6941 0.0438 23 7 4.0797 -0.0650 0.2262 24 1 -0.4849 -0.8366 -0.0756 25 1 3.5908 -3.3500 -0.2523 26 1 6.0706 -3.3189 -0.1845 27 1 7.2306 -1.1521 0.1609 28 1 5.5592 1.9441 0.8327 29 1 7.5969 3.4323 -0.0417 30 1 8.0598 2.7622 1.5410 31 1 10.0142 1.6485 0.4968 32 1 9.5508 2.3190 -1.0856 33 1 9.7927 4.6160 -0.1823 34 1 10.2561 3.9448 1.3999 35 1 13.4588 4.5771 -0.2715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:46 Heat of formation + Delta-G solvation = -139.005390 kcal Electronic energy + Delta-G solvation = -20570.069067 eV Core-core repulsion = 17145.163994 eV Total energy + Delta-G solvation = -3424.905073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70459 -41.15089 -39.91079 -37.15629 -36.31849 -35.39998 -35.32769 -33.00297 -31.65832 -29.78605 -27.28584 -25.25302 -23.68502 -23.21513 -21.58426 -21.26574 -20.28856 -19.10148 -18.76186 -17.99534 -17.43065 -17.29454 -16.95943 -16.69604 -16.25488 -15.61207 -15.37785 -15.16789 -14.74448 -14.42967 -14.26007 -14.01957 -13.72889 -13.17666 -13.03809 -12.92778 -12.64328 -12.48064 -12.42836 -12.22631 -11.76582 -11.71010 -11.61635 -11.58987 -11.11159 -10.71034 -10.41327 -9.75712 -9.27953 -9.20506 -6.83407 0.51053 0.72012 1.29190 1.56646 1.60716 1.74197 1.87096 2.08528 2.32050 2.46391 2.67972 3.52098 3.57485 3.99403 4.04089 4.07118 4.11502 4.42244 4.58891 4.62242 4.67203 4.70562 4.72189 4.77883 4.87026 5.13596 5.33119 5.36494 5.38460 5.44394 5.70570 5.71266 5.81225 5.93570 6.32307 6.42028 6.64677 7.05345 7.12433 7.48924 7.94351 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.003694 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.563727 B = 7578.808324 C = 8413.208012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.011 3.989 3 Si 1.191 2.809 4 H -0.328 1.328 5 H -0.267 1.267 6 H -0.301 1.301 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.257 3.743 10 C -0.295 4.295 11 C -0.029 4.029 12 C -0.311 4.311 13 C 0.377 3.623 14 N -0.654 5.654 15 C 0.509 3.491 16 O -0.552 6.552 17 C -0.123 4.123 18 C -0.094 4.094 19 C -0.106 4.106 20 C 0.477 3.523 21 O -0.563 6.563 22 O -0.514 6.514 23 N -0.611 5.611 24 H 0.280 0.720 25 H 0.113 0.887 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.422 0.578 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.124 13.034 3.706 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.205 4.205 3 Si 1.023 2.977 4 H -0.261 1.261 5 H -0.194 1.194 6 H -0.230 1.230 7 C -0.541 4.541 8 H 0.085 0.915 9 C 0.132 3.868 10 C -0.317 4.317 11 C -0.053 4.053 12 C -0.335 4.335 13 C 0.146 3.854 14 N -0.301 5.301 15 C 0.299 3.701 16 O -0.428 6.428 17 C -0.162 4.162 18 C -0.133 4.133 19 C -0.143 4.143 20 C 0.322 3.678 21 O -0.455 6.455 22 O -0.328 6.328 23 N -0.337 5.337 24 H 0.091 0.909 25 H 0.131 0.869 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.260 0.740 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 18.526 14.462 3.495 23.761 hybrid contribution 0.367 -3.194 -0.537 3.260 sum 18.894 11.268 2.959 22.197 Atomic orbital electron populations 1.70669 1.08458 1.32649 1.33418 1.28678 0.95627 1.08168 0.87995 0.81385 0.69915 0.67486 0.78888 1.26144 1.19415 1.23016 1.20722 0.90978 0.95979 1.46397 0.91516 1.18456 0.93457 0.87368 0.87487 1.21758 0.94883 0.98235 1.16826 1.21338 0.93530 0.97875 0.92583 1.21883 1.01505 0.91577 1.18546 1.18518 0.88138 0.86375 0.92384 1.43518 1.11782 1.12086 1.62736 1.21872 0.80260 0.91318 0.76651 1.90628 1.67520 1.43238 1.41463 1.21750 0.94479 0.93289 1.06719 1.21080 0.93247 0.97032 1.01891 1.21434 0.86014 1.00405 1.06407 1.24072 0.90069 0.79445 0.74184 1.90768 1.79330 1.33069 1.42321 1.84504 1.27466 1.43956 1.76827 1.65952 1.07975 1.29283 1.30484 0.90929 0.86862 0.84108 0.83510 0.73992 0.84590 0.84215 0.92436 0.92746 0.84321 0.84150 0.71391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.03 13.65 21.84 0.30 -45.73 16 2 C 0.01 0.63 5.52 85.29 0.47 1.10 16 3 Si 1.19 55.55 25.53 68.60 1.75 57.30 16 4 H -0.33 -14.87 7.11 99.48 0.71 -14.17 16 5 H -0.27 -11.51 6.70 99.48 0.67 -10.85 16 6 H -0.30 -14.28 7.10 99.48 0.71 -13.57 16 7 C -0.51 -28.52 9.58 23.47 0.22 -28.29 16 8 H 0.07 3.82 8.05 -2.91 -0.02 3.79 16 9 C 0.26 13.65 6.39 40.21 0.26 13.91 16 10 C -0.29 -14.09 9.83 22.87 0.22 -13.87 16 11 C -0.03 -1.24 10.15 22.40 0.23 -1.01 16 12 C -0.31 -13.54 8.83 22.72 0.20 -13.34 16 13 C 0.38 16.55 7.51 133.23 1.00 17.55 16 14 N -0.65 -21.44 5.41 -308.39 -1.67 -23.11 16 15 C 0.51 14.41 7.67 87.66 0.67 15.08 16 16 O -0.55 -20.48 12.78 -2.99 -0.04 -20.52 16 17 C -0.12 -1.71 5.70 29.85 0.17 -1.54 16 18 C -0.09 -1.59 3.79 30.59 0.12 -1.47 16 19 C -0.11 -0.93 5.81 29.84 0.17 -0.76 16 20 C 0.48 7.35 8.33 71.24 0.59 7.94 16 21 O -0.56 -14.36 16.74 21.97 0.37 -14.00 16 22 O -0.51 -5.11 13.42 -51.39 -0.69 -5.80 16 23 N -0.61 -30.26 4.58 -186.37 -0.85 -31.12 16 24 H 0.28 15.12 8.72 -92.71 -0.81 14.31 16 25 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 26 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 27 H 0.15 6.23 5.33 -3.15 -0.02 6.21 16 28 H 0.42 11.26 8.83 -92.71 -0.82 10.44 16 29 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 32 H 0.05 1.22 8.06 -2.39 -0.02 1.21 16 33 H 0.14 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.42 1.31 9.10 -74.05 -0.67 0.64 16 Total: -1.00 -78.66 306.98 3.07 -75.59 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.42 Total: 12.07 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.33 Total: -4.70 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.23 Total: -99.96 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.36 Total: -40.31 kcal Atomic # 14 Polarization: 55.55 SS G_CDS: 1.75 Total: 57.30 kcal Total: -78.66 3.07 -75.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.415 kcal (2) G-P(sol) polarization free energy of solvation -78.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds