Wall clock time and date at job start Tue Mar 31 2020 00:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86795 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46978 * 269.99714 * 3 2 1 5 5 H 1.48498 * 109.47100 * 30.00101 * 3 2 1 6 6 H 1.48503 * 109.46984 * 150.00088 * 3 2 1 7 7 C 1.40031 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.41319 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.40580 * 119.78308 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14713 * 180.02562 * 10 9 7 12 12 C 1.38636 * 118.67880 * 359.74460 * 11 10 9 13 13 C 1.39763 * 119.49235 * 0.49851 * 12 11 10 14 14 N 1.38828 * 119.58548 * 179.76567 * 13 12 11 15 15 C 1.47896 * 111.00008 * 299.85798 * 14 13 12 16 16 C 1.53998 * 107.06047 * 145.84492 * 15 14 13 17 17 C 1.54595 * 105.13482 * 358.76944 * 16 15 14 18 18 O 1.42906 * 110.72359 * 96.57937 * 17 16 15 19 19 C 1.50696 * 110.72631 * 219.68245 * 17 16 15 20 20 O 1.20833 * 119.99655 * 93.54582 * 19 17 16 21 21 O 1.34222 * 120.00432 * 273.82850 * 19 17 16 22 22 C 1.48533 * 110.99621 * 57.25051 * 14 13 12 23 23 N 1.31976 * 120.82813 * 359.49559 * 13 12 11 24 24 H 0.96997 * 119.99809 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.43240 * 0.04034 * 10 9 7 26 26 H 1.07995 * 120.66031 * 180.02562 * 11 10 9 27 27 H 1.08001 * 120.25760 * 180.27475 * 12 11 10 28 28 H 1.08995 * 109.92131 * 26.48705 * 15 14 13 29 29 H 1.09003 * 109.91435 * 265.19571 * 15 14 13 30 30 H 1.08993 * 110.30793 * 239.85762 * 16 15 14 31 31 H 1.08994 * 110.30867 * 117.68838 * 16 15 14 32 32 H 0.96702 * 113.99492 * 63.85087 * 18 17 16 33 33 H 0.96701 * 117.00458 * 179.72178 * 21 19 17 34 34 H 1.09000 * 110.66559 * 81.84498 * 22 14 13 35 35 H 1.08995 * 110.67242 * 318.71373 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3010 -2.4366 0.0005 10 6 2.0085 -3.6514 0.0005 11 6 1.3035 -4.8418 0.0000 12 6 -0.0820 -4.7945 0.0049 13 6 -0.7282 -3.5552 -0.0004 14 7 -2.1156 -3.5056 -0.0004 15 6 -2.6700 -4.1787 -1.1949 16 6 -3.9937 -4.8395 -0.7676 17 6 -4.1334 -4.5255 0.7397 18 8 -4.9646 -3.3810 0.9430 19 6 -4.6784 -5.7169 1.4844 20 8 -3.9215 -6.5050 2.0000 21 8 -6.0046 -5.9057 1.5700 22 6 -2.6741 -4.2312 1.1691 23 7 -0.0360 -2.4315 0.0001 24 1 -0.4850 0.8400 -0.0004 25 1 3.0885 -3.6554 0.0012 26 1 1.8222 -5.7891 0.0004 27 1 -0.6578 -5.7082 0.0091 28 1 -1.9735 -4.9383 -1.5499 29 1 -2.8571 -3.4465 -1.9804 30 1 -3.9475 -5.9167 -0.9269 31 1 -4.8275 -4.4096 -1.3225 32 1 -5.8791 -3.5026 0.6528 33 1 -6.3066 -6.6862 2.0544 34 1 -2.6544 -3.6009 2.0581 35 1 -2.1294 -5.1593 1.3421 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:21 Heat of formation + Delta-G solvation = -77.849528 kcal Electronic energy + Delta-G solvation = -21725.571290 eV Core-core repulsion = 18303.318134 eV Total energy + Delta-G solvation = -3422.253156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90856 -39.19684 -37.64173 -36.41575 -35.56345 -33.49004 -31.39762 -30.40523 -28.77707 -28.47945 -25.46317 -24.17555 -22.23548 -21.46168 -20.48796 -19.99675 -18.60771 -17.79563 -17.53896 -16.43668 -15.70447 -15.21682 -14.99476 -14.81092 -14.47047 -14.16984 -13.88922 -13.57710 -13.08906 -12.74918 -12.57405 -12.21351 -11.89072 -11.80704 -11.70220 -11.45784 -11.25845 -11.05519 -10.97904 -10.81782 -10.72254 -10.53436 -10.04265 -9.98390 -9.34342 -8.30956 -8.19756 -7.55028 -7.28579 -6.33014 -4.52428 1.93312 2.57779 2.73118 2.99336 3.11241 3.14022 3.19292 3.96447 4.05972 4.29449 4.48772 4.54721 4.73655 4.99438 5.31957 5.41349 5.63139 5.81025 5.90978 5.96254 6.06714 6.17398 6.22033 6.25968 6.40705 6.69848 6.74746 6.86686 7.20715 7.27535 7.46980 7.50816 7.63352 7.68956 7.72815 8.18909 8.25017 8.69609 8.92471 10.12078 10.33160 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.004905 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.377258 B = 5707.664639 C = 6368.388099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.426 4.426 8 H 0.085 0.915 9 C 0.260 3.740 10 C -0.283 4.283 11 C -0.048 4.048 12 C -0.348 4.348 13 C 0.309 3.691 14 N -0.454 5.454 15 C 0.051 3.949 16 C -0.145 4.145 17 C 0.145 3.855 18 O -0.517 6.517 19 C 0.464 3.536 20 O -0.502 6.502 21 O -0.516 6.516 22 C 0.072 3.928 23 N -0.453 5.453 24 H 0.275 0.725 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.380 0.620 33 H 0.409 0.591 34 H 0.096 0.904 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 -7.380 -0.483 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.161 4.161 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.457 4.457 8 H 0.104 0.896 9 C 0.135 3.865 10 C -0.306 4.306 11 C -0.072 4.072 12 C -0.374 4.374 13 C 0.070 3.930 14 N -0.175 5.175 15 C -0.077 4.077 16 C -0.183 4.183 17 C 0.102 3.898 18 O -0.322 6.322 19 C 0.304 3.696 20 O -0.388 6.388 21 O -0.328 6.328 22 C -0.055 4.055 23 N -0.165 5.165 24 H 0.086 0.914 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.229 0.771 33 H 0.269 0.731 34 H 0.114 0.886 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.399 -5.439 -0.309 11.740 hybrid contribution 0.302 -1.875 0.116 1.902 sum -10.097 -7.314 -0.193 12.469 Atomic orbital electron populations 1.70170 1.06946 1.27969 1.26837 1.26115 0.94962 1.01067 0.93982 0.86344 0.80442 0.80951 0.79208 1.19415 1.20059 1.18578 1.19633 0.94286 0.89306 1.42476 0.89641 1.18478 0.87343 0.92087 0.88592 1.21734 0.98744 0.93502 1.16578 1.20692 0.93575 0.96612 0.96353 1.21523 0.95406 0.97182 1.23337 1.19653 0.88008 0.89293 0.96024 1.61426 1.05849 1.49856 1.00410 1.22834 0.93347 0.97261 0.94255 1.23113 1.00575 1.01517 0.93130 1.21956 0.92728 0.81107 0.94050 1.86767 1.24526 1.35017 1.85937 1.24421 0.80132 0.87260 0.77769 1.90747 1.58916 1.45511 1.43655 1.84508 1.25544 1.50762 1.71992 1.23173 0.87431 0.99174 0.95771 1.68399 1.06898 1.25406 1.15840 0.91380 0.88243 0.88711 0.89074 0.92561 0.89616 0.90455 0.88943 0.77143 0.73137 0.88568 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -19.01 11.46 55.55 0.64 -18.37 16 2 C 0.07 1.68 5.50 -17.34 -0.10 1.59 16 3 Si 0.91 18.69 29.56 -169.99 -5.02 13.67 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.43 -11.48 9.14 -37.74 -0.34 -11.83 16 8 H 0.09 2.13 7.85 -52.48 -0.41 1.72 16 9 C 0.26 7.22 6.55 -85.00 -0.56 6.67 16 10 C -0.28 -7.04 9.83 -38.66 -0.38 -7.42 16 11 C -0.05 -1.10 10.15 -39.39 -0.40 -1.50 16 12 C -0.35 -8.02 7.90 -38.86 -0.31 -8.33 16 13 C 0.31 7.68 5.84 -155.31 -0.91 6.77 16 14 N -0.45 -9.76 5.36 -169.22 -0.91 -10.67 16 15 C 0.05 0.88 6.49 -2.76 -0.02 0.86 16 16 C -0.14 -1.88 6.26 -25.37 -0.16 -2.04 16 17 C 0.15 2.12 1.32 -89.91 -0.12 2.00 16 18 O -0.52 -7.32 13.06 -46.71 -0.61 -7.93 16 19 C 0.46 6.12 7.20 36.00 0.26 6.38 16 20 O -0.50 -8.10 16.52 -18.76 -0.31 -8.41 16 21 O -0.52 -4.68 12.97 -43.84 -0.57 -5.25 16 22 C 0.07 1.36 5.38 -1.90 -0.01 1.35 16 23 N -0.45 -12.77 7.89 -10.33 -0.08 -12.85 16 24 H 0.27 6.81 8.29 -40.82 -0.34 6.47 16 25 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 26 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.09 1.91 7.02 -52.49 -0.37 1.54 16 28 H 0.06 0.98 6.67 -51.93 -0.35 0.64 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.08 0.89 7.84 -51.93 -0.41 0.49 16 31 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.38 3.53 8.75 45.56 0.40 3.93 16 33 H 0.41 1.95 9.10 45.56 0.41 2.37 16 34 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 35 H 0.08 1.57 5.69 -51.93 -0.30 1.27 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -33.45 301.39 -7.62 -41.07 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.26 Total: 9.70 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.04 Total: -5.50 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.35 Total: -41.88 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.49 Total: -21.60 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.45 -7.62 -41.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.783 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds