Wall clock time and date at job start Tue Mar 31 2020 00:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86795 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46978 * 269.99714 * 3 2 1 5 5 H 1.48498 * 109.47100 * 30.00101 * 3 2 1 6 6 H 1.48503 * 109.46984 * 150.00088 * 3 2 1 7 7 C 1.40031 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.41319 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.40580 * 119.78308 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14713 * 180.02562 * 10 9 7 12 12 C 1.38636 * 118.67880 * 359.74460 * 11 10 9 13 13 C 1.39763 * 119.49235 * 0.49851 * 12 11 10 14 14 N 1.38828 * 119.58548 * 179.76567 * 13 12 11 15 15 C 1.47896 * 111.00008 * 299.85798 * 14 13 12 16 16 C 1.53998 * 107.06047 * 145.84492 * 15 14 13 17 17 C 1.54595 * 105.13482 * 358.76944 * 16 15 14 18 18 O 1.42906 * 110.72359 * 96.57937 * 17 16 15 19 19 C 1.50696 * 110.72631 * 219.68245 * 17 16 15 20 20 O 1.20833 * 119.99655 * 93.54582 * 19 17 16 21 21 O 1.34222 * 120.00432 * 273.82850 * 19 17 16 22 22 C 1.48533 * 110.99621 * 57.25051 * 14 13 12 23 23 N 1.31976 * 120.82813 * 359.49559 * 13 12 11 24 24 H 0.96997 * 119.99809 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.43240 * 0.04034 * 10 9 7 26 26 H 1.07995 * 120.66031 * 180.02562 * 11 10 9 27 27 H 1.08001 * 120.25760 * 180.27475 * 12 11 10 28 28 H 1.08995 * 109.92131 * 26.48705 * 15 14 13 29 29 H 1.09003 * 109.91435 * 265.19571 * 15 14 13 30 30 H 1.08993 * 110.30793 * 239.85762 * 16 15 14 31 31 H 1.08994 * 110.30867 * 117.68838 * 16 15 14 32 32 H 0.96702 * 113.99492 * 63.85087 * 18 17 16 33 33 H 0.96701 * 117.00458 * 179.72178 * 21 19 17 34 34 H 1.09000 * 110.66559 * 81.84498 * 22 14 13 35 35 H 1.08995 * 110.67242 * 318.71373 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3010 -2.4366 0.0005 10 6 2.0085 -3.6514 0.0005 11 6 1.3035 -4.8418 0.0000 12 6 -0.0820 -4.7945 0.0049 13 6 -0.7282 -3.5552 -0.0004 14 7 -2.1156 -3.5056 -0.0004 15 6 -2.6700 -4.1787 -1.1949 16 6 -3.9937 -4.8395 -0.7676 17 6 -4.1334 -4.5255 0.7397 18 8 -4.9646 -3.3810 0.9430 19 6 -4.6784 -5.7169 1.4844 20 8 -3.9215 -6.5050 2.0000 21 8 -6.0046 -5.9057 1.5700 22 6 -2.6741 -4.2312 1.1691 23 7 -0.0360 -2.4315 0.0001 24 1 -0.4850 0.8400 -0.0004 25 1 3.0885 -3.6554 0.0012 26 1 1.8222 -5.7891 0.0004 27 1 -0.6578 -5.7082 0.0091 28 1 -1.9735 -4.9383 -1.5499 29 1 -2.8571 -3.4465 -1.9804 30 1 -3.9475 -5.9167 -0.9269 31 1 -4.8275 -4.4096 -1.3225 32 1 -5.8791 -3.5026 0.6528 33 1 -6.3066 -6.6862 2.0544 34 1 -2.6544 -3.6009 2.0581 35 1 -2.1294 -5.1593 1.3421 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:20 Heat of formation + Delta-G solvation = -104.499347 kcal Electronic energy + Delta-G solvation = -21726.726913 eV Core-core repulsion = 18303.318134 eV Total energy + Delta-G solvation = -3423.408779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06065 -40.69505 -39.16476 -37.41485 -36.87762 -35.34639 -32.94045 -32.27709 -30.25523 -30.03115 -27.36184 -25.45415 -23.64937 -23.34958 -21.80531 -21.50566 -19.66622 -19.39692 -18.81180 -17.99813 -17.02082 -16.59736 -16.46556 -16.37215 -16.00872 -15.70202 -15.25847 -15.07120 -14.56200 -14.19326 -14.06628 -13.93296 -13.47751 -13.07750 -12.81894 -12.81046 -12.76420 -12.69907 -12.62639 -12.33089 -12.30374 -11.94794 -11.78474 -11.19789 -11.10237 -10.13574 -10.04161 -9.47803 -9.08526 -8.22619 -6.53620 0.72418 0.91226 1.12847 1.41438 1.52533 1.56672 1.71917 2.23586 2.78518 2.88401 3.00767 3.20709 3.35567 3.85734 3.99296 4.20417 4.24014 4.29963 4.43441 4.53277 4.63552 4.65122 4.76054 4.83868 4.90081 4.94393 5.03130 5.30014 5.42459 5.60033 5.78007 5.81791 5.88268 6.21633 6.39624 6.64177 6.77487 6.86137 6.97074 8.20208 8.45423 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.004905 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.377258 B = 5707.664639 C = 6368.388099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.021 3.979 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.227 3.773 10 C -0.301 4.301 11 C -0.047 4.047 12 C -0.343 4.343 13 C 0.298 3.702 14 N -0.479 5.479 15 C 0.046 3.954 16 C -0.129 4.129 17 C 0.153 3.847 18 O -0.534 6.534 19 C 0.479 3.521 20 O -0.535 6.535 21 O -0.496 6.496 22 C 0.070 3.930 23 N -0.495 5.495 24 H 0.279 0.721 25 H 0.113 0.887 26 H 0.133 0.867 27 H 0.114 0.886 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.403 0.597 33 H 0.433 0.567 34 H 0.069 0.931 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -8.293 -0.889 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.202 4.202 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.493 4.493 8 H 0.112 0.888 9 C 0.102 3.898 10 C -0.323 4.323 11 C -0.071 4.071 12 C -0.369 4.369 13 C 0.060 3.940 14 N -0.201 5.201 15 C -0.081 4.081 16 C -0.167 4.167 17 C 0.109 3.891 18 O -0.343 6.343 19 C 0.320 3.680 20 O -0.425 6.425 21 O -0.310 6.310 22 C -0.058 4.058 23 N -0.209 5.209 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.151 0.849 27 H 0.132 0.868 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.255 0.745 33 H 0.296 0.704 34 H 0.088 0.912 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.678 -6.398 -0.720 13.336 hybrid contribution 0.553 -1.716 0.263 1.822 sum -11.126 -8.115 -0.457 13.778 Atomic orbital electron populations 1.70301 1.08854 1.29143 1.28230 1.27069 0.95723 1.04681 0.92705 0.85118 0.78948 0.75569 0.79512 1.18563 1.19425 1.17730 1.20030 0.94906 0.90259 1.44119 0.88847 1.18981 0.87924 0.93622 0.89297 1.21938 0.99593 0.93526 1.17271 1.21120 0.93698 0.97574 0.94715 1.21811 0.95857 0.97509 1.21741 1.20109 0.89607 0.89274 0.94983 1.61358 1.04285 1.51791 1.02715 1.22918 0.95393 0.97042 0.92733 1.23088 0.99043 1.02634 0.91964 1.21579 0.90538 0.81936 0.95066 1.86729 1.26207 1.35011 1.86345 1.23880 0.81105 0.86109 0.76873 1.90751 1.60083 1.46558 1.45108 1.84432 1.22782 1.51984 1.71787 1.23036 0.90778 0.97769 0.94211 1.68362 1.07533 1.27413 1.17613 0.91063 0.86855 0.84909 0.86771 0.93010 0.90104 0.88260 0.85619 0.74515 0.70380 0.91223 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -42.05 11.46 21.84 0.25 -41.80 16 2 C 0.02 1.10 5.50 85.29 0.47 1.56 16 3 Si 0.99 39.02 29.56 68.60 2.03 41.04 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.46 -25.75 9.14 23.46 0.21 -25.54 16 8 H 0.09 4.80 7.85 -2.91 -0.02 4.78 16 9 C 0.23 13.08 6.55 40.19 0.26 13.35 16 10 C -0.30 -15.21 9.83 22.87 0.22 -14.98 16 11 C -0.05 -2.11 10.15 22.39 0.23 -1.89 16 12 C -0.34 -15.76 7.90 22.73 0.18 -15.58 16 13 C 0.30 15.21 5.84 133.40 0.78 15.99 16 14 N -0.48 -20.97 5.36 -689.28 -3.69 -24.66 16 15 C 0.05 1.56 6.49 86.45 0.56 2.12 16 16 C -0.13 -2.99 6.26 31.47 0.20 -2.80 16 17 C 0.15 4.19 1.32 -10.34 -0.01 4.17 16 18 O -0.53 -14.12 13.06 -138.01 -1.80 -15.93 16 19 C 0.48 11.42 7.20 71.23 0.51 11.93 16 20 O -0.54 -16.38 16.52 21.94 0.36 -16.02 16 21 O -0.50 -7.08 12.97 -46.93 -0.61 -7.69 16 22 C 0.07 2.66 5.38 86.65 0.47 3.13 16 23 N -0.50 -29.09 7.89 -186.59 -1.47 -30.56 16 24 H 0.28 14.33 8.29 -92.71 -0.77 13.57 16 25 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 26 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 27 H 0.11 4.64 7.02 -2.91 -0.02 4.62 16 28 H 0.05 1.77 6.67 -2.39 -0.02 1.75 16 29 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.10 1.91 7.84 -2.39 -0.02 1.89 16 31 H 0.13 2.10 8.08 -2.39 -0.02 2.08 16 32 H 0.40 6.20 8.75 -74.06 -0.65 5.56 16 33 H 0.43 2.35 9.10 -74.06 -0.67 1.68 16 34 H 0.07 2.94 8.14 -2.39 -0.02 2.93 16 35 H 0.07 2.86 5.69 -2.39 -0.01 2.85 16 Total: -1.00 -76.19 301.39 -1.02 -77.21 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.17 Total: 26.94 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 4.08 Total: -8.54 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -4.92 Total: -97.02 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -2.05 Total: -39.64 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.04 kcal Total: -76.19 -1.02 -77.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.291 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds