Wall clock time and date at job start Tue Mar 31 2020 01:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31680 * 119.63806 * 2 1 4 4 C 1.31868 * 121.96190 * 179.97438 * 3 2 1 5 5 C 1.38992 * 120.98837 * 0.02562 * 4 3 2 6 6 N 1.39989 * 120.41576 * 179.97438 * 5 4 3 7 7 C 1.34781 * 120.00064 * 146.28910 * 6 5 4 8 8 O 1.21282 * 120.00079 * 354.83764 * 7 6 5 9 9 C 1.50700 * 119.99630 * 174.83868 * 7 6 5 10 10 C 1.53003 * 109.46659 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47302 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99989 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00404 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99570 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00147 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46869 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46926 * 120.00175 * 15 13 11 18 18 H 1.48495 * 109.47092 * 240.00137 * 15 13 11 19 19 C 1.38965 * 119.16800 * 0.23375 * 5 4 3 20 20 C 1.39592 * 119.64447 * 179.97438 * 2 1 3 21 21 C 1.47737 * 120.52542 * 0.02562 * 20 2 1 22 22 O 1.21469 * 120.00238 * 6.14649 * 21 20 2 23 23 O 1.34706 * 119.99836 * 186.13995 * 21 20 2 24 24 H 1.09002 * 109.46934 * 96.86649 * 1 2 3 25 25 H 1.09000 * 109.46856 * 216.86919 * 1 2 3 26 26 H 1.08996 * 109.47152 * 336.86442 * 1 2 3 27 27 H 1.08001 * 119.50609 * 179.97438 * 4 3 2 28 28 H 0.97000 * 120.00161 * 326.29639 * 6 5 4 29 29 H 1.08995 * 109.47408 * 60.00370 * 9 7 6 30 30 H 1.08998 * 109.47447 * 299.99738 * 9 7 6 31 31 H 1.09000 * 109.47385 * 299.99752 * 10 9 7 32 32 H 1.08997 * 109.47646 * 59.99705 * 10 9 7 33 33 H 0.97006 * 119.99995 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.88900 * 179.72127 * 19 5 4 35 35 H 0.96695 * 117.00034 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1445 0.0000 4 6 3.4758 1.1980 0.0005 5 6 4.2392 0.0364 0.0005 6 7 5.6373 0.1072 0.0005 7 6 6.3594 -0.8285 0.6483 8 8 5.7989 -1.6774 1.3087 9 6 7.8633 -0.8197 0.5521 10 6 8.4335 -1.9783 1.3728 11 6 9.9373 -1.9701 1.2761 12 1 10.4366 -1.2139 0.6884 13 6 10.6761 -2.9273 1.9387 14 7 10.0682 -3.8478 2.6547 15 14 12.5402 -2.9175 1.8183 16 1 12.9746 -1.7878 0.9578 17 1 13.1230 -2.7584 3.1748 18 1 13.0047 -4.1980 1.2270 19 6 3.5971 -1.1960 -0.0049 20 6 2.1975 -1.2132 0.0005 21 6 1.4626 -2.4948 0.0005 22 8 0.2532 -2.5015 -0.1126 23 8 2.1338 -3.6560 0.1258 24 1 -0.3633 -0.1229 -1.0203 25 1 -0.3633 -0.8222 0.6166 26 1 -0.3633 0.9450 0.4038 27 1 3.9692 2.1587 0.0001 28 1 6.0864 0.8296 -0.4656 29 1 8.2467 0.1240 0.9399 30 1 8.1613 -0.9322 -0.4903 31 1 8.1355 -1.8664 2.4153 32 1 8.0500 -2.9219 0.9847 33 1 10.5879 -4.5215 3.1207 34 1 4.1629 -2.1159 -0.0096 35 1 1.6098 -4.4687 0.1200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607981676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:05 Heat of formation + Delta-G solvation = -98.221813 kcal Electronic energy + Delta-G solvation = -20636.736371 eV Core-core repulsion = 17213.599807 eV Total energy + Delta-G solvation = -3423.136565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.25034 -40.04936 -39.01179 -36.37781 -35.19351 -33.61491 -32.76752 -31.98022 -30.88751 -27.72979 -25.66061 -25.34142 -23.03170 -22.32808 -21.07548 -19.96128 -18.54939 -17.79549 -17.19212 -16.59594 -16.32887 -15.98855 -15.87343 -15.66186 -14.90624 -14.49243 -14.34930 -13.70716 -13.48712 -13.27633 -12.95454 -12.72807 -12.43259 -12.27548 -12.20194 -11.68010 -11.30106 -11.02145 -10.81165 -10.69668 -10.63740 -10.10130 -10.00102 -9.99109 -9.75623 -9.31050 -9.14625 -8.42009 -8.33772 -6.04098 -4.09093 0.28439 0.97710 2.29260 2.77209 2.89610 3.05031 3.27819 3.35515 3.38207 3.56184 4.09766 4.39867 4.44034 4.62629 4.65895 4.94134 5.23021 5.31404 5.36152 5.55059 5.59065 5.61228 5.84359 5.96255 6.02800 6.05779 6.09171 6.37459 6.59890 6.70149 7.41949 7.62457 7.64682 7.70483 7.72619 7.96270 8.24226 8.40289 8.98769 9.55247 11.06751 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030297 B = 0.003438 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.969342 B = 8143.286276 C = 8928.255938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.169 3.831 3 N -0.471 5.471 4 C 0.110 3.890 5 C 0.091 3.909 6 N -0.681 5.681 7 C 0.509 3.491 8 O -0.509 6.509 9 C -0.128 4.128 10 C 0.036 3.964 11 C -0.529 4.529 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.888 5.888 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.021 4.021 20 C -0.166 4.166 21 C 0.536 3.464 22 O -0.509 6.509 23 O -0.503 6.503 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.166 0.834 28 H 0.414 0.586 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.163 0.837 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 8.107 -7.894 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 N -0.179 5.179 4 C -0.050 4.050 5 C -0.007 4.007 6 N -0.328 5.328 7 C 0.299 3.701 8 O -0.382 6.382 9 C -0.168 4.168 10 C -0.002 4.002 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.049 4.049 20 C -0.170 4.170 21 C 0.380 3.620 22 O -0.399 6.399 23 O -0.315 6.315 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.183 0.817 28 H 0.250 0.750 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.180 0.820 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -16.319 8.419 -7.313 19.765 hybrid contribution 1.581 -0.983 -0.219 1.875 sum -14.737 7.436 -7.531 18.144 Atomic orbital electron populations 1.21016 0.87435 1.03951 1.04016 1.21402 0.97554 0.86272 0.91823 1.67652 1.08772 1.27776 1.13749 1.22915 0.89289 0.97512 0.95259 1.18782 0.85421 0.94364 1.02101 1.43931 1.02914 1.31246 1.54750 1.22002 0.91673 0.79573 0.76881 1.90713 1.72888 1.36329 1.38270 1.21932 0.86537 1.04490 1.03801 1.18939 0.94813 0.91348 0.95103 1.21213 0.91413 1.13329 1.30786 0.92454 1.25025 0.98657 0.95462 0.95204 1.69999 1.35420 1.15834 1.31410 0.86520 0.85599 0.77925 0.77832 1.19714 1.20983 1.20974 1.22021 0.92775 0.99233 0.90846 1.19779 0.93646 0.91745 1.11807 1.20533 0.85129 0.84194 0.72139 1.90838 1.14941 1.87714 1.46452 1.84639 1.45119 1.16965 1.84735 0.89923 0.88444 0.90889 0.81668 0.74987 0.89626 0.89524 0.95675 0.95661 0.92910 0.81965 0.72530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 8.86 36.01 0.32 -0.82 16 2 C 0.17 2.13 6.82 -82.15 -0.56 1.57 16 3 N -0.47 -5.86 10.25 -8.98 -0.09 -5.95 16 4 C 0.11 1.23 11.11 -17.26 -0.19 1.03 16 5 C 0.09 1.17 6.28 -83.58 -0.53 0.65 16 6 N -0.68 -8.43 5.35 -9.80 -0.05 -8.48 16 7 C 0.51 8.73 7.59 -10.98 -0.08 8.65 16 8 O -0.51 -10.87 13.75 5.56 0.08 -10.80 16 9 C -0.13 -2.32 5.64 -27.88 -0.16 -2.48 16 10 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 11 C -0.53 -14.36 9.11 -34.44 -0.31 -14.68 16 12 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 15 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.02 -0.30 8.32 -38.66 -0.32 -0.62 16 20 C -0.17 -2.22 5.89 -104.86 -0.62 -2.84 16 21 C 0.54 6.79 8.20 34.61 0.28 7.08 16 22 O -0.51 -6.76 14.15 -19.24 -0.27 -7.03 16 23 O -0.50 -5.60 12.77 -40.51 -0.52 -6.12 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.10 1.10 5.86 -51.93 -0.30 0.79 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 28 H 0.41 3.47 8.82 -40.82 -0.36 3.11 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.16 2.63 6.22 -52.49 -0.33 2.30 16 35 H 0.42 2.48 9.11 45.56 0.42 2.89 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -34.87 310.86 -5.91 -40.79 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.07 Total: 2.88 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.38 Total: -0.13 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.59 Total: -40.30 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.71 Total: -23.95 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.87 -5.91 -40.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607981676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.433 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds